ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast35h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071369.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 1e-50
2emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4,... 92 2e-15
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4gb|AY106385.1| Zea mays PCO066310 mRNA sequence 88 3e-14
5ref|XM_467003.1| Oryza sativa (japonica cultivar-group), mRNA 80 6e-12
6dbj|AK073818.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
7ref|XM_480176.1| Oryza sativa (japonica cultivar-group), mRNA 74 4e-10
8dbj|AK070710.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
9ref|NM_197267.1| Oryza sativa (japonica cultivar-group) putative... 64 4e-07
10dbj|AK058656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
11gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 gen... 62 1e-06
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
14dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
15dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
17ref|XM_473308.1| Oryza sativa (japonica cultivar-group), predic... 50 0.006
18ref|NM_130077.2| Arabidopsis thaliana structural molecule AT2G45... 48 0.022
19gb|AY093014.1| Arabidopsis thaliana putative VAMP-associated pro... 48 0.022
20gb|BT006283.1| Arabidopsis thaliana At2g45140 mRNA, complete cds 48 0.022
21emb|BX818981.1|CNS0A8RZ Arabidopsis thaliana Full-length cDNA Co... 48 0.022
22emb|BX821072.1|CNS0A8CY Arabidopsis thaliana Full-length cDNA Co... 48 0.022
23emb|BX821071.1|CNS0A8CA Arabidopsis thaliana Full-length cDNA Co... 48 0.022
24emb|BX842101.1|CNS09Y9V Arabidopsis thaliana Full-length cDNA Co... 48 0.022
25gb|AY088399.1| Arabidopsis thaliana clone 6457 mRNA, complete se... 48 0.022
26emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in... 42 1.4
27emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.4
28dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
29dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.4
30dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
31gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.3
32gb|BT013294.1| Lycopersicon esculentum clone 134912R, mRNA sequence 40 5.3
33emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.3
34gb|AY422211.1| Homo sapiens cholesteryl ester transfer protein, ... 40 5.3
35gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome... 40 5.3
36emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.3
37gb|DQ442658.1| Solanum chacoense VAP25 (VAP25) mRNA, complete cds 40 5.3
38gb|AC004666.9| Homo sapiens chromosome 17, clone CTC-468F23, com... 40 5.3
39gb|L34079.2|HUMXRCC1G Homo sapiens DNA repair protein (XRCC1), p... 40 5.3
40gb|AF512504.1| Homo sapiens X-ray repair complementing defective... 40 5.3
41gb|AC138207.3| Homo sapiens chromosome 17, clone RP11-848P1, com... 40 5.3
42gb|AC012181.8| Homo sapiens chromosome 16 clone RP11-325K4, comp... 40 5.3
43gb|AC154659.2| Mus musculus BAC clone RP24-269K6 from chromosome... 40 5.3
44gb|AY172980.1| Homo sapiens cholesteryl ester transfer protein (... 40 5.3
45gb|AC023825.8| Homo sapiens chromosome 16 clone RP11-322D14, com... 40 5.3
46gb|DQ020484.1| Sus scrofa clone BAC KNP_217F2, complete sequence 40 5.3
47emb|AJ337884.1|HSA337884 Homo sapiens genomic sequence surroundi... 40 5.3
48dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.3
49gb|M32992.1|HUMCETP1 Human cholesteryl ester transfer protein (C... 40 5.3 
>dbj|AK071369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096L07, full
           insert sequence
          Length = 1296

 Score =  208 bits (105), Expect = 1e-50
 Identities = 180/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 158 gcagatgggctccgactccaaggagctgctcgggatcgagcccctcgagctccgcttccc 217
           ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| |
Sbjct: 214 gcagatgggctccgactccaaggagttgctcgggatcgagccgctcgagctccggttctc 273

                                                                       
Query: 218 cttcgagttcatgaagcagatctcgtgctccatggagctcaccaacaggacggacgacta 277
           |||||||   | |||||||||||| ||||||||| |||| || ||||| || || |||||
Sbjct: 274 cttcgagacgaagaagcagatctcatgctccatgcagctgacgaacagaacagatgacta 333

                                                                       
Query: 278 cctcgccttcaaggtcaagacgaccagccccaagaagtactgcgttcgccccaacagcgg 337
           | ||||||| ||||||||||| || ||||| ||||||||||||||  | || ||||| ||
Sbjct: 334 catcgcctttaaggtcaagacaactagcccaaagaagtactgcgtcaggccgaacagtgg 393

                                    
Query: 338 cattgtgccgccacggtccaccagc 362
           |||||||||||||||||||||||||
Sbjct: 394 cattgtgccgccacggtccaccagc 418
to top
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11,
             complete sequence
          Length = 113677

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                   
Query: 158   gcagatgggctccgactccaaggagctgctcgggatcgagcccctcgagctccg 211
             ||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 94233 gcagatgggctccgactccaaggagttgctcgggatcgagccgctcgagctccg 94286



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 289   aggtcaagacgaccagccccaagaagtactgcgttcgccccaacagcggcattgtgccgc 348
             |||||||||| || ||||| ||||||||||||||  | || ||||| |||||||||||||
Sbjct: 94620 aggtcaagacaactagcccaaagaagtactgcgtcaggccgaacagtggcattgtgccgc 94679

                           
Query: 349   cacggtccaccagc 362
             ||||||||||||||
Sbjct: 94680 cacggtccaccagc 94693



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                         
Query: 230   gaagcagatctcgtgctccatggagctcaccaacaggacggacgactacctcgccttcaa 289
             |||||||||||| ||||||||| |||| || ||||| || || |||||| ||||||| ||
Sbjct: 94410 gaagcagatctcatgctccatgcagctgacgaacagaacagatgactacatcgcctttaa 94469

                
Query: 290   ggt 292
             |||
Sbjct: 94470 ggt 94472
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                      
Query: 158      gcagatgggctccgactccaaggagctgctcgggatcgagcccctcgagctccg 211
                ||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 26688962 gcagatgggctccgactccaaggagttgctcgggatcgagccgctcgagctccg 26688909



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                            
Query: 289      aggtcaagacgaccagccccaagaagtactgcgttcgccccaacagcggcattgtgccgc 348
                |||||||||| || ||||| ||||||||||||||  | || ||||| |||||||||||||
Sbjct: 26688575 aggtcaagacaactagcccaaagaagtactgcgtcaggccgaacagtggcattgtgccgc 26688516

                              
Query: 349      cacggtccaccagc 362
                ||||||||||||||
Sbjct: 26688515 cacggtccaccagc 26688502



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                            
Query: 230      gaagcagatctcgtgctccatggagctcaccaacaggacggacgactacctcgccttcaa 289
                |||||||||||| ||||||||| |||| || ||||| || || |||||| ||||||| ||
Sbjct: 26688785 gaagcagatctcatgctccatgcagctgacgaacagaacagatgactacatcgcctttaa 26688726

                   
Query: 290      ggt 292
                |||
Sbjct: 26688725 ggt 26688723
to top
>gb|AY106385.1| Zea mays PCO066310 mRNA sequence
          Length = 1083

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                       
Query: 193 tcgagcccctcgagctccgcttccccttcgagttcatgaagcagatctcgtgctccatgg 252
           |||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||| 
Sbjct: 110 tcgaccccctcgagctacgcttccccttcgagttgaagaagcagatctcgtgctccatgc 169

               
Query: 253 agct 256
           ||||
Sbjct: 170 agct 173
to top
>ref|XM_467003.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1113

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                       
Query: 161 gatgggctccgactccaaggagctgctcgggatcgagcccctcgagctccgcttcccctt 220
           |||| |||||||||||| |||||||||||||||||| ||||  ||||||  |||||||||
Sbjct: 130 gatgagctccgactccagggagctgctcgggatcgatcccccggagctcatcttcccctt 189

                                   
Query: 221 cgagttcatgaagcagatctcgtg 244
           ||| || | |||||| ||||||||
Sbjct: 190 cgaattaaagaagcaaatctcgtg 213
to top
>dbj|AK073818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O06, full
           insert sequence
          Length = 1112

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 148/184 (80%)
 Strand = Plus / Plus

                                                                       
Query: 161 gatgggctccgactccaaggagctgctcgggatcgagcccctcgagctccgcttcccctt 220
           |||| |||||||||||| |||||||||||||||||| ||||  ||||||  |||||||||
Sbjct: 129 gatgagctccgactccagggagctgctcgggatcgatcccccggagctcatcttcccctt 188

                                                                       
Query: 221 cgagttcatgaagcagatctcgtgctccatggagctcaccaacaggacggacgactacct 280
           ||| || | |||||| |||||||| ||  || | || || |||| ||| || || ||  |
Sbjct: 189 cgaattaaagaagcaaatctcgtgttctctgcacctaacaaacaagacagatgaatatgt 248

                                                                       
Query: 281 cgccttcaaggtcaagacgaccagccccaagaagtactgcgttcgccccaacagcggcat 340
           | | || ||||| |||||||| || || |||||||||||||| || || || | ||||||
Sbjct: 249 cacgtttaaggttaagacgactagtccaaagaagtactgcgtccgtccaaataacggcat 308

               
Query: 341 tgtg 344
           ||||
Sbjct: 309 tgtg 312
to top
>ref|XM_480176.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1130

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 103/125 (82%)
 Strand = Plus / Plus

                                                                       
Query: 192 atcgagcccctcgagctccgcttccccttcgagttcatgaagcagatctcgtgctccatg 251
           ||||| ||| |||| |||||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 187 atcgaccccgtcgaactccgcttccccttcgagttgaagaagcagatctcgtgctcgatg 246

                                                                       
Query: 252 gagctcaccaacaggacggacgactacctcgccttcaaggtcaagacgaccagccccaag 311
            ||||  | ||    |  ||||||||| ||||||||||||| || || || ||||| |||
Sbjct: 247 cagctatcgaatctcagcgacgactacatcgccttcaaggtgaaaactacaagcccaaag 306

                
Query: 312 aagta 316
           |||||
Sbjct: 307 aagta 311
to top
>dbj|AK070710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062F08, full
           insert sequence
          Length = 1130

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 103/125 (82%)
 Strand = Plus / Plus

                                                                       
Query: 192 atcgagcccctcgagctccgcttccccttcgagttcatgaagcagatctcgtgctccatg 251
           ||||| ||| |||| |||||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 187 atcgaccccgtcgaactccgcttccccttcgagttgaagaagcagatctcgtgctcgatg 246

                                                                       
Query: 252 gagctcaccaacaggacggacgactacctcgccttcaaggtcaagacgaccagccccaag 311
            ||||  | ||    |  ||||||||| ||||||||||||| || || || ||||| |||
Sbjct: 247 cagctatcgaatctcagcgacgactacatcgccttcaaggtgaaaactacaagcccaaag 306

                
Query: 312 aagta 316
           |||||
Sbjct: 307 aagta 311
to top
>ref|NM_197267.1| Oryza sativa (japonica cultivar-group) putative vesicle-associated
           membrane protein (OSJNBb0015K05.13), mRNA
          Length = 828

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 288 aaggtcaagacgaccagccccaagaagtactgcgttcgccccaa 331
           ||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 124 aaggttaagacgacgagccccaagaagtactgcgtgcgccccaa 167
to top
>dbj|AK058656.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F08, full
           insert sequence
          Length = 1119

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 288 aaggtcaagacgaccagccccaagaagtactgcgttcgccccaa 331
           ||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 124 aaggttaagacgacgagccccaagaagtactgcgtgcgccccaa 167
to top
>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete
             sequence
          Length = 123292

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                        
Query: 289   aggtcaagacgaccagccccaagaagtactgcgttcgccccaa 331
             |||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 95850 aggttaagacgacgagccccaagaagtactgcgtgcgccccaa 95892
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                           
Query: 289      aggtcaagacgaccagccccaagaagtactgcgttcgccccaa 331
                |||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 18899191 aggttaagacgacgagccccaagaagtactgcgtgcgccccaa 18899149
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 161      gatgggctccgactccaaggagctgctcgggatcgagcccctcgagctccgcttcccct 219
                |||| |||||||||||| |||||||||||||||||| ||||  ||||||  ||||||||
Sbjct: 25849690 gatgagctccgactccagggagctgctcgggatcgatcccccggagctcatcttcccct 25849632
to top
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1282_H11
          Length = 143314

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 161  gatgggctccgactccaaggagctgctcgggatcgagcccctcgagctccgcttcccct 219
            |||| |||||||||||| |||||||||||||||||| ||||  ||||||  ||||||||
Sbjct: 1031 gatgagctccgactccagggagctgctcgggatcgatcccccggagctcatcttcccct 973
to top
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_G03
          Length = 106401

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 161   gatgggctccgactccaaggagctgctcgggatcgagcccctcgagctccgcttcccct 219
             |||| |||||||||||| |||||||||||||||||| ||||  ||||||  ||||||||
Sbjct: 96296 gatgagctccgactccagggagctgctcgggatcgatcccccggagctcatcttcccct 96238
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                           
Query: 289      aggtcaagacgaccagccccaagaagtactgcgttcgccccaa 331
                |||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 18910445 aggttaagacgacgagccccaagaagtactgcgtgcgccccaa 18910403
to top
>ref|XM_473308.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1536

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                     
Query: 230  gaagcagatctcgtgctccatggagctcaccaacaggacggacgactacctcgcctt 286
            |||||||||||| ||||||||| |||| || ||||| || || |||||| |||||||
Sbjct: 1086 gaagcagatctcatgctccatgcagctgacgaacagaacagatgactacatcgcctt 1142
to top
>ref|NM_130077.2| Arabidopsis thaliana structural molecule AT2G45140 mRNA, complete
           cds
          Length = 1262

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgtt 323
           ||||||||||||| |||||||| |  || |||||||||||||||
Sbjct: 333 tcgccttcaaggttaagacgacgaatccaaagaagtactgcgtt 376
to top
>gb|AY093014.1| Arabidopsis thaliana putative VAMP-associated protein (At2g45140)
           mRNA, complete cds
          Length = 1261

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgtt 323
           ||||||||||||| |||||||| |  || |||||||||||||||
Sbjct: 333 tcgccttcaaggttaagacgacgaatccaaagaagtactgcgtt 376
to top
>gb|BT006283.1| Arabidopsis thaliana At2g45140 mRNA, complete cds
          Length = 720

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgtt 323
           ||||||||||||| |||||||| |  || |||||||||||||||
Sbjct: 110 tcgccttcaaggttaagacgacgaatccaaagaagtactgcgtt 153
to top
>emb|BX818981.1|CNS0A8RZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB33ZG06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1128

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgtt 323
           ||||||||||||| |||||||| |  || |||||||||||||||
Sbjct: 250 tcgccttcaaggttaagacgacgaatccaaagaagtactgcgtt 293
to top
>emb|BX821072.1|CNS0A8CY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL10ZD06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1077

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgtt 323
           ||||||||||||| |||||||| |  || |||||||||||||||
Sbjct: 255 tcgccttcaaggttaagacgacgaatccaaagaagtactgcgtt 298
to top
>emb|BX821071.1|CNS0A8CA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL10ZC08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1088

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgtt 323
           ||||||||||||| |||||||| |  || |||||||||||||||
Sbjct: 255 tcgccttcaaggttaagacgacgaatccaaagaagtactgcgtt 298
to top
>emb|BX842101.1|CNS09Y9V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL95ZG07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1024

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgtt 323
           ||||||||||||| |||||||| |  || |||||||||||||||
Sbjct: 216 tcgccttcaaggttaagacgacgaatccaaagaagtactgcgtt 259
to top
>gb|AY088399.1| Arabidopsis thaliana clone 6457 mRNA, complete sequence
          Length = 1134

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgtt 323
           ||||||||||||| |||||||| |  || |||||||||||||||
Sbjct: 272 tcgccttcaaggttaagacgacgaatccaaagaagtactgcgtt 315
to top
>emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in linkage group 8,
             complete sequence
          Length = 203472

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 215   ccccttcgagttcatgaagcagatc 239
             ||||||||||| |||||||||||||
Sbjct: 42926 ccccttcgagtgcatgaagcagatc 42950
to top
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 108    ccccctcgccggaccgaccccgcgc 132
              ||||||||||||||||| |||||||
Sbjct: 106677 ccccctcgccggaccgagcccgcgc 106701
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 220     tcgagttcatgaagcagatctcgtgctccatggagct 256
               ||||||| | |||||||||||||||||| ||| ||||
Sbjct: 3283188 tcgagttgaagaagcagatctcgtgctcgatgcagct 3283152



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 270     gacgactacctcgccttcaaggtc 293
               ||||||||| ||||||||||||||
Sbjct: 3283138 gacgactacatcgccttcaaggtc 3283115
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 183     ctgctcgggatcgagcccctcgagc 207
               |||||||||||||||| ||||||||
Sbjct: 6962443 ctgctcgggatcgagcacctcgagc 6962419
to top
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0438H08
          Length = 148626

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 220   tcgagttcatgaagcagatctcgtgctccatggagct 256
             ||||||| | |||||||||||||||||| ||| ||||
Sbjct: 60755 tcgagttgaagaagcagatctcgtgctcgatgcagct 60719



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 270   gacgactacctcgccttcaaggtc 293
             ||||||||| ||||||||||||||
Sbjct: 60705 gacgactacatcgccttcaaggtc 60682
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 127     ccgcgccgagctcgcccgcc 146
               ||||||||||||||||||||
Sbjct: 1428102 ccgcgccgagctcgcccgcc 1428121
to top
>gb|BT013294.1| Lycopersicon esculentum clone 134912R, mRNA sequence
          Length = 1079

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgttcgccccaa 331
           |||| ||||||||||| ||||| | |||||| ||||| || ||||| |||||
Sbjct: 213 tcgctttcaaggtcaaaacgacgaaccccaaaaagtattgtgttcgacccaa 264
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 284     cttcaaggtcaagacgacca 303
               ||||||||||||||||||||
Sbjct: 1468608 cttcaaggtcaagacgacca 1468627
to top
>gb|AY422211.1| Homo sapiens cholesteryl ester transfer protein, plasma (CETP) gene,
            complete cds
          Length = 25612

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  acctcgccttcaaggtcaag 296
            ||||||||||||||||||||
Sbjct: 2211 acctcgccttcaaggtcaag 2230
to top
>gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome 17, complete sequence
          Length = 191739

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      cccactcctgctccctcccc 24
              ||||||||||||||||||||
Sbjct: 189782 cccactcctgctccctcccc 189801
to top
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16
          Length = 227214

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   ccagcagcgtcgtcgtgacg 377
             ||||||||||||||||||||
Sbjct: 58187 ccagcagcgtcgtcgtgacg 58168
to top
>gb|DQ442658.1| Solanum chacoense VAP25 (VAP25) mRNA, complete cds
          Length = 980

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 280 tcgccttcaaggtcaagacgaccagccccaagaagtactgcgttcgccccaa 331
           |||| ||||||||||| ||||| | |||||| ||||| || ||||| |||||
Sbjct: 154 tcgctttcaaggtcaaaacgacaaaccccaaaaagtattgtgttcgacccaa 205
to top
>gb|AC004666.9| Homo sapiens chromosome 17, clone CTC-468F23, complete sequence
          Length = 75120

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     ccactcctgctccctcccca 25
             ||||||||||||||||||||
Sbjct: 50255 ccactcctgctccctcccca 50274
to top
>gb|L34079.2|HUMXRCC1G Homo sapiens DNA repair protein (XRCC1), partial sequence
          Length = 30527

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     actcctgctccctccccaac 27
             ||||||||||||||||||||
Sbjct: 10955 actcctgctccctccccaac 10974
to top
>gb|AF512504.1| Homo sapiens X-ray repair complementing defective repair in Chinese
            hamster cells 1 (XRCC1) gene, complete cds
          Length = 35181

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    actcctgctccctccccaac 27
            ||||||||||||||||||||
Sbjct: 8701 actcctgctccctccccaac 8720



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    actcctgctccctccccaac 27
            ||||||||||||||||||||
Sbjct: 8683 actcctgctccctccccaac 8702
to top
>gb|AC138207.3| Homo sapiens chromosome 17, clone RP11-848P1, complete sequence
          Length = 212934

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      ccactcctgctccctcccca 25
              ||||||||||||||||||||
Sbjct: 165825 ccactcctgctccctcccca 165806
to top
>gb|AC012181.8| Homo sapiens chromosome 16 clone RP11-325K4, complete sequence
          Length = 189712

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  acctcgccttcaaggtcaag 296
            ||||||||||||||||||||
Sbjct: 5622 acctcgccttcaaggtcaag 5603
to top
>gb|AC154659.2| Mus musculus BAC clone RP24-269K6 from chromosome 17, complete sequence
          Length = 177071

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     cccactcctgctccctcccc 24
             ||||||||||||||||||||
Sbjct: 53837 cccactcctgctccctcccc 53856
to top
>gb|AY172980.1| Homo sapiens cholesteryl ester transfer protein (CETP) gene, promoter
            region, exon 1 and partial cds
          Length = 4110

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  acctcgccttcaaggtcaag 296
            ||||||||||||||||||||
Sbjct: 3368 acctcgccttcaaggtcaag 3387
to top
>gb|AC023825.8| Homo sapiens chromosome 16 clone RP11-322D14, complete sequence
          Length = 217521

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    acctcgccttcaaggtcaag 296
              ||||||||||||||||||||
Sbjct: 216944 acctcgccttcaaggtcaag 216925
to top
>gb|DQ020484.1| Sus scrofa clone BAC KNP_217F2, complete sequence
          Length = 170283

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ctcctgctccctccccaacc 28
             ||||||||||||||||||||
Sbjct: 97352 ctcctgctccctccccaacc 97371
to top
>emb|AJ337884.1|HSA337884 Homo sapiens genomic sequence surrounding NotI site, clone NB6-264C
          Length = 1079

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tccctccccaaccaaaaatt 35
           ||||||||||||||||||||
Sbjct: 895 tccctccccaaccaaaaatt 914
to top
>dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-651F18, complete
             sequence
          Length = 117898

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tctcgtgctccatggagctc 257
             ||||||||||||||||||||
Sbjct: 32666 tctcgtgctccatggagctc 32647
to top
>gb|M32992.1|HUMCETP1 Human cholesteryl ester transfer protein (CETP) gene, exons 1 and 2
          Length = 1656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 277 acctcgccttcaaggtcaag 296
           ||||||||||||||||||||
Sbjct: 678 acctcgccttcaaggtcaag 697


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,380,469
Number of Sequences: 3902068
Number of extensions: 2380469
Number of successful extensions: 44826
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44458
Number of HSP's gapped (non-prelim): 368
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top