ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast35c01 |
|---|---|
| Clone Library Name | barley_pub |
>MUTL_ECOLI (P23367) DNA mismatch repair protein mutL| Length = 615 Score = 32.7 bits (73), Expect = 0.53 Identities = 21/66 (31%), Positives = 29/66 (43%) Frame = +1 Query: 280 PQQAG*SI*RS*KWNSNNTFNSTMSREELLPGYTPSPHFEAEAPPPWCHECQGTPAQQHQ 459 PQ A SI + N F +RE + P YTP+P + PW + G QQ + Sbjct: 344 PQPAPRSIPENRVAAGRNHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGE 403 Query: 460 LSESLL 477 + LL Sbjct: 404 VYRQLL 409
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 30.4 bits (67), Expect = 2.6 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +2 Query: 266 YMLDVHNKQGDQFEEAKSGTATTHLTQLCLGKNFCPGIRL 385 + +V++K+ D FE K+G A ++ C CP + L Sbjct: 137 FKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTL 176
>MUTL_ECO57 (Q8XDN4) DNA mismatch repair protein mutL| Length = 615 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +1 Query: 331 NTFNSTMSREELLPGYTPSPHFEAEAPPPWCHECQGTPAQQHQLSESLL 477 N F RE + P YTP+P + PW + G QQ ++ LL Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLL 409
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 30.0 bits (66), Expect = 3.4 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +2 Query: 14 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT---VTSVIFDGFGLCSPMQQDLVD- 181 P + +W G+D C T+++G C + +L +T I FG +Q+ ++ Sbjct: 338 PPRLAESWKGNDPC--TNWIGIACSNGNITVISLEKMELTGTISPEFGAIKSLQRIILGI 395 Query: 182 ------------ELPDLALFQASSNNFGGEVP 241 LP+L SSN G+VP Sbjct: 396 NNLTGMIPQELTTLPNLKTLDVSSNKLFGKVP 427
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 367 LPGYTPSPHFEAEAPPPWCHECQGTPAQQHQLSESLLPP 483 LP P P A PP + + PA++++ ES +PP Sbjct: 700 LPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPP 738
>3MGH_STAAW (P65416) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 17 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 130 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAS (Q6G6X6) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 17 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 130 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAR (Q6GE90) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 17 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 130 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAN (P65415) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 17 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 130 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAM (P65414) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 17 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 130 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAC (Q5HDL2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 17 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 130 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 367 LPGYTPSPHFEAEAPPPWCHECQGTPAQQHQLSESLLPP 483 LP P P A PP + + PA++++ ES +PP Sbjct: 701 LPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPP 739
>ZNF92_HUMAN (Q03936) Zinc finger protein 92 (Zinc finger protein HTF12)| Length = 586 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +2 Query: 20 NVTSTWTGHDICATT--SYLGFNCGAPHGQASNLTVTSVIFDG 142 N +S +T H I T SY CG Q+SNLT +I+ G Sbjct: 491 NQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTG 533
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 28.9 bits (63), Expect = 7.6 Identities = 22/77 (28%), Positives = 33/77 (42%) Frame = +2 Query: 8 SDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCSPMQQDLVDEL 187 SDP S+W+ ++ +LG +C A SN V SV F L P ++ L Sbjct: 36 SDPAQSLSSWSDNNDVTPCKWLGVSCDA----TSN--VVSVDLSSFMLVGPF-PSILCHL 88 Query: 188 PDLALFQASSNNFGGEV 238 P L +N+ G + Sbjct: 89 PSLHSLSLYNNSINGSL 105
>NU157_YEAST (P40064) Nucleoporin NUP157 (Nuclear pore protein NUP157)| Length = 1391 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 140 GFGLCSPMQQDLVDELPDLALFQASSNNFGGEVPILTGLSYMYM 271 G G +P Q+ V +PD L Q S+ ++ I L+Y ++ Sbjct: 131 GLGAFTPFQRQQVTNIPDEVLSQVSNTEIKSDMGIFLELNYCWI 174
>V70K_OYMV (P20130) 66 kDa protein| Length = 597 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +3 Query: 126 QSFSMALV---CVHRCNKILSTSFPILHSSRLPPTTSAAKSLSSPDLA 260 Q MAL+ C H + S SFP H S LPP ++ SSP + Sbjct: 469 QHCQMALMENYCSHFSSPSSSVSFPEDHQSSLPPISTRWVQCSSPSFS 516
>VTS1_EMENI (Q5BGC4) Protein vts1| Length = 611 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = +2 Query: 14 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTS 127 P NV ++W T+ G GAPH Q S++ + Sbjct: 332 PYNVNASWASMTNTPMTATFGSQLGAPHQQGSDMVANA 369 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,106,163 Number of Sequences: 219361 Number of extensions: 1587583 Number of successful extensions: 4911 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4623 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4903 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
