ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast34h06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF372987.1| Zea mays legumin-like protein (cl2-1) mRNA, complete cds Length = 1357 Score = 266 bits (134), Expect = 4e-68 Identities = 170/182 (93%) Strand = Plus / Plus Query: 126 aaggcgtacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatg 185 ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 87 aaggcctacggcggcgacggcggcgcctactacgagtggagccccgccgacctgcccatg 146 Query: 186 ctcggcgtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctc 245 ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| Sbjct: 147 ctcggcgtcgcctccatcggcgcagccaagctctcgctcgccgccggcgggctcgcgctc 206 Query: 246 cccagctactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcggc 305 ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 207 cccagctactccgactcagccaaggtcgcctacgtcctccaaggcacgggcacctgcggc 266 Query: 306 at 307 || Sbjct: 267 at 268
>gb|AF372988.1| Zea mays legumin-like protein (cl2-2) mRNA, complete cds Length = 1401 Score = 260 bits (131), Expect = 2e-66 Identities = 179/195 (91%) Strand = Plus / Plus Query: 96 gcggtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctac 155 ||||||||||||||||| ||| ||| ||||| ||||||||||| |||||||||||| Sbjct: 75 gcggtggatctgaccccaaggacgcccaagaaggcctacggcggcgacggcggcgcctac 134 Query: 156 tacgagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaag 215 |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 135 tacgagtggagccccgccgacctgcccatgctcgccgtcgcctccatcggcgccgccaag 194 Query: 216 ctctcgctcgccgccggcggcatgtcgctccccagctactccgactccgccaaggtcgcc 275 ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| Sbjct: 195 ctctcgctcgccgccggcggcctctccctccccagctactccgactccgccaaggtcgcc 254 Query: 276 tacgtcctccaaggc 290 |||||||| |||||| Sbjct: 255 tacgtcctacaaggc 269
>gb|AY183450.1| Zea mays legumin-like protein mRNA, complete cds Length = 1330 Score = 131 bits (66), Expect = 2e-27 Identities = 132/154 (85%) Strand = Plus / Plus Query: 139 gcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggcgtcgcct 198 |||| ||||| ||||||||||| ||| ||| ||||| ||||||||||||||||| |||| Sbjct: 117 gcgacggcggagcctactacgactggtcccccgccgatctgcccatgctcggcgttgcct 176 Query: 199 ccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagctactccg 258 |||| || ||||||||||||| ||| ||||||| || | | || ||||||||||||| Sbjct: 177 ccattggtgccgccaagctctgcctcaccgccggaggtcttgccctacccagctactccg 236 Query: 259 actccgccaaggtcgcctacgtcctccaaggcaa 292 |||| |||||| |||||||||||||||||||||| Sbjct: 237 actctgccaagatcgcctacgtcctccaaggcaa 270
>ref|NM_189500.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 127 bits (64), Expect = 2e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 132 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 191 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 85 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 144 Query: 192 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 251 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 145 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 204 Query: 252 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 303 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 205 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 256
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 127 bits (64), Expect = 2e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 132 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 191 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 43129929 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 43129870 Query: 192 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 251 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 43129869 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 43129810 Query: 252 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 303 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 43129809 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 43129758
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 127 bits (64), Expect = 2e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 132 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 191 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 126958 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 126899 Query: 192 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 251 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 126898 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 126839 Query: 252 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 303 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 126838 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 126787
>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0020E09 Length = 149195 Score = 127 bits (64), Expect = 2e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 132 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 191 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 17384 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 17325 Query: 192 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 251 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 17324 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 17265 Query: 252 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 303 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 17264 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 17213
>dbj|AK061022.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D01, full insert sequence Length = 1478 Score = 127 bits (64), Expect = 2e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 132 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 191 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 147 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 206 Query: 192 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 251 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 207 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 266 Query: 252 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 303 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 267 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 318
>dbj|AK121775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092N18, full insert sequence Length = 1506 Score = 119 bits (60), Expect = 6e-24 Identities = 183/224 (81%) Strand = Plus / Plus Query: 99 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 158 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 255 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 314 Query: 159 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 218 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 315 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 374 Query: 219 tcgctcgccgccggcggcatgtcgctccccagctactccgactccgccaaggtcgcctac 278 |||||| |||||| ||| | | || ||||||| |||||||||| ||||| || || Sbjct: 375 tcgctcaacgccggtggcctcgccctgcccagcttttccgactccggaaaggttgcgtat 434 Query: 279 gtcctccaaggcaagggaacctgcggcattgtgctgcctgaggc 322 || || ||||||||||| || || |||||||| ||||| ||||| Sbjct: 435 gttcttcaaggcaagggcacttgtggcattgtcctgccggaggc 478
>dbj|AK058320.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A11, full insert sequence Length = 1364 Score = 119 bits (60), Expect = 6e-24 Identities = 183/224 (81%) Strand = Plus / Plus Query: 99 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 158 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 103 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 162 Query: 159 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 218 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 163 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 222 Query: 219 tcgctcgccgccggcggcatgtcgctccccagctactccgactccgccaaggtcgcctac 278 |||||| |||||| ||| | | || ||||||| |||||||||| ||||| || || Sbjct: 223 tcgctcaacgccggtggcctcgccctgcccagcttttccgactccggaaaggttgcgtat 282 Query: 279 gtcctccaaggcaagggaacctgcggcattgtgctgcctgaggc 322 || || ||||||||||| || || |||||||| ||||| ||||| Sbjct: 283 gttcttcaaggcaagggcacttgtggcattgtcctgccggaggc 326
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 99.6 bits (50), Expect = 5e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 99 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 158 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 48919 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 48860 Query: 159 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 218 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 48859 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 48800 Query: 219 tcgctc 224 |||||| Sbjct: 48799 tcgctc 48794
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 99.6 bits (50), Expect = 5e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 99 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 158 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 116938 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 116879 Query: 159 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 218 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 116878 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 116819 Query: 219 tcgctc 224 |||||| Sbjct: 116818 tcgctc 116813
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 99.6 bits (50), Expect = 5e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 99 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 158 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 844496 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 844437 Query: 159 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 218 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 844436 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 844377 Query: 219 tcgctc 224 |||||| Sbjct: 844376 tcgctc 844371
>ref|XM_473254.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 429 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 212 caagctctcgctcgccgccggcg 234 ||||||||||||||||||||||| Sbjct: 57 caagctctcgctcgccgccggcg 79
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 212 caagctctcgctcgccgccggcg 234 ||||||||||||||||||||||| Sbjct: 26365862 caagctctcgctcgccgccggcg 26365884 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ctcggcgtcgcctccatcggc 206 ||||||||||||||||||||| Sbjct: 7803929 ctcggcgtcgcctccatcggc 7803949 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ctcggcgtcgcctccatcggc 206 ||||||||||||||||||||| Sbjct: 7796403 ctcggcgtcgcctccatcggc 7796423
>dbj|AK064693.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F03, full insert sequence Length = 737 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 212 caagctctcgctcgccgccggcg 234 ||||||||||||||||||||||| Sbjct: 93 caagctctcgctcgccgccggcg 115
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 212 caagctctcgctcgccgccggcg 234 ||||||||||||||||||||||| Sbjct: 6495 caagctctcgctcgccgccggcg 6517
>emb|CT005238.2| Methylocapsa acidiphila B2, overlapping BAC clones, complete sequence Length = 100887 Score = 46.1 bits (23), Expect = 0.069 Identities = 32/35 (91%) Strand = Plus / Minus Query: 202 tcggcgccgccaagctctcgctcgccgccggcggc 236 |||||||| |||||| | ||||||||||||||||| Sbjct: 84358 tcggcgcctccaagcgcgcgctcgccgccggcggc 84324
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Plus Query: 209 cgccaagctctcgctcgccgccggcg 234 ||||| |||||||||||||||||||| Sbjct: 1964738 cgccatgctctcgctcgccgccggcg 1964763
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 tccttcctgctcgccacggcaa 30 |||||||||||||||||||||| Sbjct: 26920559 tccttcctgctcgccacggcaa 26920538 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgccgccaagctctcgctcgccgcc 230 |||||||| |||||||||||||||| Sbjct: 25948647 cgccgccatgctctcgctcgccgcc 25948671
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 tccttcctgctcgccacggcaa 30 |||||||||||||||||||||| Sbjct: 44320 tccttcctgctcgccacggcaa 44299
>ref|XM_476968.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2015 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgccgccaagctctcgctcgccgcc 230 |||||||| |||||||||||||||| Sbjct: 33 cgccgccatgctctcgctcgccgcc 57
>gb|AC151106.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNOa0281D22, complete sequence Length = 35282 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ctcggcgtcgcctccatcggc 206 ||||||||||||||||||||| Sbjct: 23428 ctcggcgtcgcctccatcggc 23448
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 cggcgtcgcctccatcggcgc 208 ||||||||||||||||||||| Sbjct: 1558525 cggcgtcgcctccatcggcgc 1558505
>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10, complete sequence Length = 202924 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ctcggcgtcgcctccatcggc 206 ||||||||||||||||||||| Sbjct: 192265 ctcggcgtcgcctccatcggc 192285 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ctcggcgtcgcctccatcggc 206 ||||||||||||||||||||| Sbjct: 184739 ctcggcgtcgcctccatcggc 184759
>emb|AL662948.4|OSJN00150 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060B20, complete sequence Length = 147254 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ctcggcgtcgcctccatcggc 206 ||||||||||||||||||||| Sbjct: 9626 ctcggcgtcgcctccatcggc 9646 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ctcggcgtcgcctccatcggc 206 ||||||||||||||||||||| Sbjct: 2100 ctcggcgtcgcctccatcggc 2120
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 180 cccatgctcggcgtcgcctccatcggcgccgcc 212 |||||||| |||||||| |||||||||||||| Sbjct: 3116144 cccatgctgcgcgtcgccaccatcggcgccgcc 3116176
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgccgccaagctctcgctcgccgcc 230 |||||||| |||||||||||||||| Sbjct: 4968082 cgccgccatgctctcgctcgccgcc 4968106
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgccgccaagctctcgctcgccgcc 230 |||||||| |||||||||||||||| Sbjct: 103745 cgccgccatgctctcgctcgccgcc 103769
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgccgccaagctctcgctcgccgcc 230 |||||||| |||||||||||||||| Sbjct: 9771 cgccgccatgctctcgctcgccgcc 9795
>dbj|AP005173.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003E08 Length = 161095 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgccgccaagctctcgctcgccgcc 230 |||||||| |||||||||||||||| Sbjct: 153566 cgccgccatgctctcgctcgccgcc 153590
>dbj|AK099718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088A21, full insert sequence Length = 2015 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgccgccaagctctcgctcgccgcc 230 |||||||| |||||||||||||||| Sbjct: 33 cgccgccatgctctcgctcgccgcc 57
>gb|AY973155.1| Cryptococcus gattii strain WM779 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973122.1| Cryptococcus gattii strain A2M R299 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973121.1| Cryptococcus gattii strain A2M R314 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973120.1| Cryptococcus gattii strain A3M R29 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973119.1| Cryptococcus gattii strain A4M R64 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973118.1| Cryptococcus gattii strain A1M R554 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973117.1| Cryptococcus gattii strain A1M F2863 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973116.1| Cryptococcus gattii strain A1M R794 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973115.1| Cryptococcus gattii strain KB7892 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973114.1| Cryptococcus gattii strain WM179 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>ref|XM_362896.1| Magnaporthe grisea 70-15 hypothetical protein (MG08541.4) partial cds Length = 2013 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 catcggcgccgccaagctct 219 |||||||||||||||||||| Sbjct: 619 catcggcgccgccaagctct 600
>ref|XM_367026.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03102.4) partial mRNA Length = 1602 Score = 40.1 bits (20), Expect = 4.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 209 cgccaagctctcgctcgccgccggcggc 236 |||||||||||||||| ||||||||||| Sbjct: 276 cgccaagctctcgctc-ccgccggcggc 302
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gttcggcggcgatggcggtg 101 |||||||||||||||||||| Sbjct: 3309858 gttcggcggcgatggcggtg 3309839
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 134 cggcggcgagggcggcgcctactacgag 161 ||||| ||||| |||||||||||||||| Sbjct: 102092 cggcgtcgaggtcggcgcctactacgag 102065
>emb|X51756.1|ACVNF Azotobacter chroococcum vnfH, D, G, and K genes, region encoding the structural genes for vanadium nitrogenase Length = 7203 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 cgctcgccgccggcggcatg 239 |||||||||||||||||||| Sbjct: 2131 cgctcgccgccggcggcatg 2112
>gb|AY973637.1| Cryptococcus gattii orotidine monophosphate pyrophosphorylase (URA5) gene, URA5-A allele, complete cds Length = 779 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 18 cgactccgccaaggtcgcct 37
>emb|AJ555834.1|CHE555834 Cryptococcus bacillisporus ura5 gene for orotidine monophosphate pyrophosphorylase, exons 1-3, specimen voucher WM779 Length = 779 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 18 cgactccgccaaggtcgcct 37
>emb|AJ555831.1|HSA555831 Cryptococcus bacillisporus ura5 gene for orotidine monophosphate pyrophosphorylase, exons 1-3, specimen voucher WM179 Length = 779 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgactccgccaaggtcgcct 276 |||||||||||||||||||| Sbjct: 18 cgactccgccaaggtcgcct 37
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cgtcgcctccatcggcgccg 210 |||||||||||||||||||| Sbjct: 673156 cgtcgcctccatcggcgccg 673137
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 134 cggcggcgagggcggcgcctactacgag 161 ||||| ||||| |||||||||||||||| Sbjct: 18522777 cggcgtcgaggtcggcgcctactacgag 18522750
>gb|AC113618.5| Homo sapiens BAC clone RP11-1367O10 from 2, complete sequence Length = 199917 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 cacaccctccttcctgctcgccac 25 ||||||||||||||||| |||||| Sbjct: 126227 cacaccctccttcctgcccgccac 126250
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gctctcgctcgccgccggcg 234 |||||||||||||||||||| Sbjct: 4701425 gctctcgctcgccgccggcg 4701444
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ggcggcgatggcggtggatc 105 |||||||||||||||||||| Sbjct: 40445 ggcggcgatggcggtggatc 40464
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 134 cggcggcgagggcggcgcctactacgag 161 ||||| ||||| |||||||||||||||| Sbjct: 18682178 cggcgtcgaggtcggcgcctactacgag 18682151
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 cgctcgccgccggcggcatg 239 |||||||||||||||||||| Sbjct: 180696 cgctcgccgccggcggcatg 180715
>dbj|AB005222.1| Acidiphilium organovorum genes for L and M subunits of photosynthetic reaction center complex, partial cds Length = 1578 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 gctcggcgtcgcctccatcg 204 |||||||||||||||||||| Sbjct: 987 gctcggcgtcgcctccatcg 1006
>dbj|AB005221.1| Acidiphilium multivorum genes for L and M subunits of photosynthetic reaction center complex, partial cds Length = 1584 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 gctcggcgtcgcctccatcg 204 |||||||||||||||||||| Sbjct: 988 gctcggcgtcgcctccatcg 1007
>dbj|AB005220.1| Acidiphilium cryptum genes for L and M subunits of photosynthetic reaction center complex, partial cds Length = 1647 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 gctcggcgtcgcctccatcg 204 |||||||||||||||||||| Sbjct: 979 gctcggcgtcgcctccatcg 998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,742,115 Number of Sequences: 3902068 Number of extensions: 2742115 Number of successful extensions: 59528 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 57883 Number of HSP's gapped (non-prelim): 1642 length of query: 323 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 301 effective length of database: 17,147,199,772 effective search space: 5161307131372 effective search space used: 5161307131372 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
