ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast34g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY111955.1| Zea mays CL15209_1 mRNA sequence 141 2e-30
2gb|BT016309.1| Zea mays clone Contig142 mRNA sequence 125 1e-25
3dbj|AK104788.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
4dbj|AK065872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
5dbj|AB019533.1| Oryza sativa mRNA for Nad-dependent formate dehy... 125 1e-25
6dbj|D88272.1| Hordeum vulgare mRNA for formate dehydrogenase, co... 117 3e-23
7gb|AF479036.1| Triticum aestivum formate dehydrogenase mRNA, par... 105 1e-19
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
9dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
10dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
11dbj|AK064610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
12ref|XM_500012.1| Yarrowia lipolytica CLIB122, YALI0A12353g predi... 44 0.35
13dbj|AB071373.1| Paracoccus sp. 12-A fdh gene for NAD-dependent f... 44 0.35
14emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 44 0.35
15ref|XM_368597.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 1.4
16gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 1.4
17emb|BX021470.1|CNS08OQA Single read from an extremity of a full-... 42 1.4
18dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.4
19dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.4
20ref|XM_315544.2| Anopheles gambiae str. PEST ENSANGP00000021228 ... 42 1.4
21ref|NM_121482.2| Arabidopsis thaliana FDH (FORMATE DEHYDROGENASE... 40 5.5
22ref|XM_991888.1| PREDICTED: Mus musculus ribosome binding protei... 40 5.5
23ref|XM_622097.3| PREDICTED: Mus musculus ribosome binding protei... 40 5.5
24ref|XM_918338.2| PREDICTED: Mus musculus ribosome binding protei... 40 5.5
25gb|AF192329.1| Enterococcus faecalis transposon Tn1549, complete... 40 5.5
26ref|XM_501224.1| Yarrowia lipolytica CLIB122, YALI0B22506g predi... 40 5.5
27gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.5
28gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.5
29gb|AC063952.15| Homo sapiens 3 BAC RP11-174O3 (Roswell Park Canc... 40 5.5
30emb|AL391149.1|ATT9L3 Arabidopsis thaliana DNA chromosome 5, BAC... 40 5.5
31gb|AC010536.8| Homo sapiens chromosome 16 clone RP11-278A23, com... 40 5.5
32gb|AY081734.1| Arabidopsis thaliana AT5g14780/T9L3_80 mRNA, comp... 40 5.5
33gb|AF208029.1|AF208029 Arabidopsis thaliana NAD-dependent format... 40 5.5
34gb|AF208028.1|AF208028 Arabidopsis thaliana NAD-dependent format... 40 5.5
35gb|AY054285.1| Arabidopsis thaliana AT5g14780/T9L3_80 mRNA, comp... 40 5.5
36dbj|AK019964.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 5.5
37gb|AY039609.1| Arabidopsis thaliana AT5g14780/T9L3_80 mRNA, comp... 40 5.5
38emb|AL929550.7| Mouse DNA sequence from clone RP23-77A2 on chrom... 40 5.5
39dbj|AB023897.1| Arabidopsis thaliana fdh mRNA for formate dehydr... 40 5.5
40gb|AF217195.1|AF217195 Arabidopsis thaliana formate dehydrogenas... 40 5.5
41ref|NM_001003179.1| Canis familiaris ribosome receptor (P180), mRNA 40 5.5
42gb|AY089191.1| Arabidopsis thaliana clone 7530 mRNA, complete se... 40 5.5
43ref|XM_230637.3| PREDICTED: Rattus norvegicus ribosome binding p... 40 5.5
44dbj|AK129349.1| Mus musculus mRNA for mKIAA1398 protein 40 5.5
45emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 5.5
46emb|X87224.1|CFP180RRC Canis familiaris mRNA for ribosome recept... 40 5.5

>gb|AY111955.1| Zea mays CL15209_1 mRNA sequence
          Length = 1667

 Score =  141 bits (71), Expect = 2e-30
 Identities = 152/179 (84%)
 Strand = Plus / Plus

                                                                       
Query: 177 ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
           ||||| |||||||| || || ||||||||||||| ||| ||| | || |   ||||||||
Sbjct: 179 ggcagcaagaagatagtcggggtgttctacaaggccggggagtatgccgacaagaacccc 238

                                                                       
Query: 237 aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
           |||||||| || ||||| |||   || || ||||||||| ||||||||||||||||||||
Sbjct: 239 aacttcgtcggctgcgtcgagggtgcactcggcatccgcggctggctcgagtcgcagggc 298

                                                                      
Query: 297 caccagtacatcgtcaccgacgacaaggacggccccaactgcgagctggagaagcacat 355
           || |||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 299 catcagtacattgtcaccgatgacaaggaaggccccaactgtgaactggagaagcacat 357



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>gb|BT016309.1| Zea mays clone Contig142 mRNA sequence
          Length = 1507

 Score =  125 bits (63), Expect = 1e-25
 Identities = 150/179 (83%)
 Strand = Plus / Plus

                                                                       
Query: 177 ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
           ||||| || ||||| || || ||||||||||||| ||| ||| | || |   ||||||||
Sbjct: 174 ggcagcaaaaagatagtcggggtgttctacaaggccggggagtatgccgacaagaacccc 233

                                                                       
Query: 237 aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
           |||||||| || ||||| |||   || || ||||||||| ||||||||||||||||||||
Sbjct: 234 aacttcgtcggctgcgtcgagggtgcactcggcatccgcggctggctcgagtcgcagggc 293

                                                                      
Query: 297 caccagtacatcgtcaccgacgacaaggacggccccaactgcgagctggagaagcacat 355
           || || ||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 294 catcaatacattgtcaccgatgacaaggaaggccccaactgtgaactggagaagcacat 352



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>dbj|AK104788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E04, full
           insert sequence
          Length = 1637

 Score =  125 bits (63), Expect = 1e-25
 Identities = 150/179 (83%)
 Strand = Plus / Plus

                                                                       
Query: 177 ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
           ||||| |||||||||||||| ||||||||||||||||||||| |||| |   |||| |||
Sbjct: 161 ggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaatccc 220

                                                                       
Query: 237 aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
           |||||||| || |||||||||  ||| || |||||||||   ||||| |||||  |||| 
Sbjct: 221 aacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaagggg 280

                                                                      
Query: 297 caccagtacatcgtcaccgacgacaaggacggccccaactgcgagctggagaagcacat 355
           || || ||||| ||||||||||||||||| || |  ||| |||||||||||||||||||
Sbjct: 281 catcactacattgtcaccgacgacaaggaggggctaaacagcgagctggagaagcacat 339



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>dbj|AK065872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048A01, full
           insert sequence
          Length = 1648

 Score =  125 bits (63), Expect = 1e-25
 Identities = 150/179 (83%)
 Strand = Plus / Plus

                                                                       
Query: 177 ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
           ||||| |||||||||||||| ||||||||||||||||||||| |||| |   |||| |||
Sbjct: 172 ggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaatccc 231

                                                                       
Query: 237 aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
           |||||||| || |||||||||  ||| || |||||||||   ||||| |||||  |||| 
Sbjct: 232 aacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaagggg 291

                                                                      
Query: 297 caccagtacatcgtcaccgacgacaaggacggccccaactgcgagctggagaagcacat 355
           || || ||||| ||||||||||||||||| || |  ||| |||||||||||||||||||
Sbjct: 292 catcactacattgtcaccgacgacaaggaggggctaaacagcgagctggagaagcacat 350



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>dbj|AB019533.1| Oryza sativa mRNA for Nad-dependent formate dehydrogenase, complete
           cds
          Length = 1449

 Score =  125 bits (63), Expect = 1e-25
 Identities = 150/179 (83%)
 Strand = Plus / Plus

                                                                       
Query: 177 ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
           ||||| |||||||||||||| ||||||||||||||||||||| |||| |   |||| |||
Sbjct: 175 ggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaatccc 234

                                                                       
Query: 237 aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
           |||||||| || |||||||||  ||| || |||||||||   ||||| |||||  |||| 
Sbjct: 235 aacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaagggg 294

                                                                      
Query: 297 caccagtacatcgtcaccgacgacaaggacggccccaactgcgagctggagaagcacat 355
           || || ||||| ||||||||||||||||| || |  ||| |||||||||||||||||||
Sbjct: 295 catcactacattgtcaccgacgacaaggaggggctaaacagcgagctggagaagcacat 353



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>dbj|D88272.1| Hordeum vulgare mRNA for formate dehydrogenase, complete cds
          Length = 1380

 Score =  117 bits (59), Expect = 3e-23
 Identities = 149/179 (83%)
 Strand = Plus / Plus

                                                                       
Query: 177 ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
           ||||| ||||||||||| |||||||||||| ||| ||||||| |||| |   ||||||||
Sbjct: 149 ggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaacccc 208

                                                                       
Query: 237 aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
           |||||||| || ||||| |||   || || ||||| |||  ||||||||||||| |||| 
Sbjct: 209 aacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtcgaagggg 268

                                                                      
Query: 297 caccagtacatcgtcaccgacgacaaggacggccccaactgcgagctggagaagcacat 355
           ||||| ||||| ||||||||||||||||| ||    ||| |||||||||||||||||||
Sbjct: 269 caccactacattgtcaccgacgacaaggaggggtttaacagcgagctggagaagcacat 327



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>gb|AF479036.1| Triticum aestivum formate dehydrogenase mRNA, partial cds
          Length = 801

 Score =  105 bits (53), Expect = 1e-19
 Identities = 149/181 (82%)
 Strand = Plus / Plus

                                                                       
Query: 175 cgggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacc 234
           ||||||| |||||||||||||||||||||||| ||| ||||||| |||| |   ||||||
Sbjct: 119 cgggcagcaagaagatcgtgggcgtgttctaccaggccggcgagtacgccgacaagaacc 178

                                                                       
Query: 235 ccaacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagg 294
           |||||||||| || || || |||   || || ||||| |||  ||||||||||||  |||
Sbjct: 179 ccaacttcgtcggctgtgttgagggggccctcggcatacgcgactggctcgagtccaagg 238

                                                                       
Query: 295 gccaccagtacatcgtcaccgacgacaaggacggccccaactgcgagctggagaagcaca 354
           | || || ||||| ||||||||||||||||| ||    ||| ||||||||||||||||||
Sbjct: 239 ggcatcactacattgtcaccgacgacaaggaggggttgaacagcgagctggagaagcaca 298

            
Query: 355 t 355
           |
Sbjct: 299 t 299



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  105 bits (53), Expect = 1e-19
 Identities = 125/149 (83%)
 Strand = Plus / Plus

                                                                            
Query: 177      ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
                ||||| |||||||||||||| ||||||||||||||||||||| |||| |   |||| |||
Sbjct: 16431990 ggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaatccc 16432049

                                                                            
Query: 237      aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
                |||||||| || |||||||||  ||| || |||||||||   ||||| |||||  |||| 
Sbjct: 16432050 aacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaagggg 16432109

                                             
Query: 297      caccagtacatcgtcaccgacgacaagga 325
                || || ||||| |||||||||||||||||
Sbjct: 16432110 catcactacattgtcaccgacgacaagga 16432138



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 177      ggcagaaagaagatcgtgggcgtgttctacaagggcggcgag 218
                ||||| |||||| ||||||| |||||||||||||| ||||||
Sbjct: 16461804 ggcagcaagaaggtcgtgggtgtgttctacaagggtggcgag 16461845



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                        
Query: 339      gagctggagaagcacatggcggacgcgcacgtgctcatcatcacgccgttccaccc 394
                ||||||||||||||||| | ||| || ||||| || |||| ||| || ||||||||
Sbjct: 16462620 gagctggagaagcacatcgaggatgcccacgtcctgatcaccaccccattccaccc 16462675



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>dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0404G03
          Length = 135225

 Score =  105 bits (53), Expect = 1e-19
 Identities = 125/149 (83%)
 Strand = Plus / Plus

                                                                         
Query: 177   ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
             ||||| |||||||||||||| ||||||||||||||||||||| |||| |   |||| |||
Sbjct: 41308 ggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaatccc 41367

                                                                         
Query: 237   aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
             |||||||| || |||||||||  ||| || |||||||||   ||||| |||||  |||| 
Sbjct: 41368 aacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaagggg 41427

                                          
Query: 297   caccagtacatcgtcaccgacgacaagga 325
             || || ||||| |||||||||||||||||
Sbjct: 41428 catcactacattgtcaccgacgacaagga 41456



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 177   ggcagaaagaagatcgtgggcgtgttctacaagggcggcgag 218
             ||||| |||||| ||||||| |||||||||||||| ||||||
Sbjct: 71122 ggcagcaagaaggtcgtgggtgtgttctacaagggtggcgag 71163



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 339   gagctggagaagcacatggcggacgcgcacgtgctcatcatcacgccgttccaccc 394
             ||||||||||||||||| | ||| || ||||| || |||| ||| || ||||||||
Sbjct: 71938 gagctggagaagcacatcgaggatgcccacgtcctgatcaccaccccattccaccc 71993



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>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0008F02
          Length = 139655

 Score =  105 bits (53), Expect = 1e-19
 Identities = 125/149 (83%)
 Strand = Plus / Plus

                                                                          
Query: 177    ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
              ||||| |||||||||||||| ||||||||||||||||||||| |||| |   |||| |||
Sbjct: 108553 ggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaatccc 108612

                                                                          
Query: 237    aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
              |||||||| || |||||||||  ||| || |||||||||   ||||| |||||  |||| 
Sbjct: 108613 aacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaagggg 108672

                                           
Query: 297    caccagtacatcgtcaccgacgacaagga 325
              || || ||||| |||||||||||||||||
Sbjct: 108673 catcactacattgtcaccgacgacaagga 108701



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 177    ggcagaaagaagatcgtgggcgtgttctacaagggcggcgag 218
              ||||| |||||| ||||||| |||||||||||||| ||||||
Sbjct: 138367 ggcagcaagaaggtcgtgggtgtgttctacaagggtggcgag 138408



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                      
Query: 339    gagctggagaagcacatggcggacgcgcacgtgctcatcatcacgccgttccaccc 394
              ||||||||||||||||| | ||| || ||||| || |||| ||| || ||||||||
Sbjct: 139183 gagctggagaagcacatcgaggatgcccacgtcctgatcaccaccccattccaccc 139238



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>dbj|AK064610.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B06, full
           insert sequence
          Length = 1872

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 172/218 (78%)
 Strand = Plus / Plus

                                                                       
Query: 177 ggcagaaagaagatcgtgggcgtgttctacaagggcggcgagcacgcggggcagaacccc 236
           ||||| |||||| ||||||| |||||||||||||| ||| || | || |   |||| |||
Sbjct: 630 ggcagcaagaaggtcgtgggtgtgttctacaagggtggcaagtatgccgacaagaatccc 689

                                                                       
Query: 237 aacttcgttggttgcgtggagaacgcgctgggcatccgcagctggctcgagtcgcagggc 296
           |||||||| || ||||| ||   ||| || ||||| ||| ||||||| || ||  |||| 
Sbjct: 690 aacttcgtcggctgcgtcgactccgctctcggcattcgcggctggcttgaatctaagggg 749

                                                                       
Query: 297 caccagtacatcgtcaccgacgacaaggacggccccaactgcgagctggagaagcacatg 356
           || |  ||||| |||||||| |||||||| ||    ||||||||||||||||||||||| 
Sbjct: 750 catcgctacattgtcaccgatgacaaggaggggataaactgcgagctggagaagcacatc 809

                                                 
Query: 357 gcggacgcgcacgtgctcatcatcacgccgttccaccc 394
           | ||| || ||||| || |||| ||| || ||||||||
Sbjct: 810 gaggatgcccacgtcctgatcaccaccccattccaccc 847



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>ref|XM_500012.1| Yarrowia lipolytica CLIB122, YALI0A12353g predicted mRNA
          Length = 1107

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 278 ctggctcgagtcgcagggccac 299
           ||||||||||||||||||||||
Sbjct: 96  ctggctcgagtcgcagggccac 117



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>dbj|AB071373.1| Paracoccus sp. 12-A fdh gene for NAD-dependent formate
           dehydrogenase, complete cds
          Length = 1455

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 320 caaggacggccccaactgcgagctggagaagcac 353
           ||||||||||||| || |||||||||| ||||||
Sbjct: 458 caaggacggccccgacagcgagctggaaaagcac 491



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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 278     ctggctcgagtcgcagggccac 299
               ||||||||||||||||||||||
Sbjct: 1288546 ctggctcgagtcgcagggccac 1288567



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>ref|XM_368597.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG00647.4) partial mRNA
          Length = 1494

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 338  cgagctggagaagcacatggcggac 362
            |||||||||||||| ||||||||||
Sbjct: 1380 cgagctggagaagcgcatggcggac 1404



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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 252     gtggagaacgcgctgggcatccgca 276
               |||||| ||||||||||||||||||
Sbjct: 1414040 gtggaggacgcgctgggcatccgca 1414016



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>emb|BX021470.1|CNS08OQA Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA31DD02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1052

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 339 gagctggagaagcacatggcggacgcgca 367
           |||||| |||||||||||||||| |||||
Sbjct: 696 gagctgaagaagcacatggcggaggcgca 724



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 302     gtacatcgtcaccgacgacaaggac 326
               |||||||| ||||||||||||||||
Sbjct: 3207683 gtacatcgacaccgacgacaaggac 3207659



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 306     atcgtcaccgacgacaaggacggcc 330
               ||||||||||||||||||| |||||
Sbjct: 1343078 atcgtcaccgacgacaagggcggcc 1343102



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>ref|XM_315544.2| Anopheles gambiae str. PEST ENSANGP00000021228
           (ENSANGG00000018739), mRNA
          Length = 1836

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 339 gagctggagaagcacatggcggacgcgca 367
           |||||| |||||||||||||||| |||||
Sbjct: 704 gagctgaagaagcacatggcggaggcgca 732



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>ref|NM_121482.2| Arabidopsis thaliana FDH (FORMATE DEHYDROGENASE); oxidoreductase,
           acting on the CH-OH group of donors, NAD or NADP as
           acceptor AT5G14780 (FDH) mRNA, complete cds
          Length = 1518

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 282 cagtacatcgtcactgatgacaaggaaggccc 313



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>ref|XM_991888.1| PREDICTED: Mus musculus ribosome binding protein 1 (Rrbp1), mRNA
          Length = 5431

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gagctggagaagcacatggc 358
            ||||||||||||||||||||
Sbjct: 4324 gagctggagaagcacatggc 4343



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>ref|XM_622097.3| PREDICTED: Mus musculus ribosome binding protein 1, transcript
            variant 1 (Rrbp1), mRNA
          Length = 5443

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gagctggagaagcacatggc 358
            ||||||||||||||||||||
Sbjct: 4336 gagctggagaagcacatggc 4355



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>ref|XM_918338.2| PREDICTED: Mus musculus ribosome binding protein 1, transcript
            variant 5 (Rrbp1), mRNA
          Length = 5371

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gagctggagaagcacatggc 358
            ||||||||||||||||||||
Sbjct: 4264 gagctggagaagcacatggc 4283



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>gb|AF192329.1| Enterococcus faecalis transposon Tn1549, complete sequence
          Length = 33805

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   cagtacatcgtcaccgacgacaag 323
             |||||||||||| |||||||||||
Sbjct: 12359 cagtacatcgtccccgacgacaag 12382



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>ref|XM_501224.1| Yarrowia lipolytica CLIB122, YALI0B22506g predicted mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 255 gagaacgcgctgggcatccgcagctggctcgagtcgcagggcca 298
           ||||||| ||| ||||||||   |||||||||||| ||||||||
Sbjct: 73  gagaacgagctcggcatccgatcctggctcgagtcccagggcca 116



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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 362     cgcgcacgtgctcatcatcacgccgttc 389
               ||||||| || |||||||||||||||||
Sbjct: 2533656 cgcgcacatgatcatcatcacgccgttc 2533683



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 305     catcgtcaccgacgacaagg 324
               ||||||||||||||||||||
Sbjct: 1060147 catcgtcaccgacgacaagg 1060166



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>gb|AC063952.15| Homo sapiens 3 BAC RP11-174O3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152024

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      tccactcgcagcagcagcac 27
              ||||||||||||||||||||
Sbjct: 122603 tccactcgcagcagcagcac 122622



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>emb|AL391149.1|ATT9L3 Arabidopsis thaliana DNA chromosome 5, BAC clone T9L3 (ESSA project)
          Length = 89370

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 300   cagtacatcgtcaccgacgacaaggacggccc 331
             |||||||||||||| || |||||||| |||||
Sbjct: 45013 cagtacatcgtcactgatgacaaggaaggccc 45044



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>gb|AC010536.8| Homo sapiens chromosome 16 clone RP11-278A23, complete sequence
          Length = 208236

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    gcagcagcagcactgcacca 34
             ||||||||||||||||||||
Sbjct: 30732 gcagcagcagcactgcacca 30713



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>gb|AY081734.1| Arabidopsis thaliana AT5g14780/T9L3_80 mRNA, complete cds
          Length = 1155

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 223 cagtacatcgtcactgatgacaaggaaggccc 254



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>gb|AF208029.1|AF208029 Arabidopsis thaliana NAD-dependent formate dehydrogenase 1B (FDH1B)
           mRNA, complete cds
          Length = 1508

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 272 cagtacatcgtcactgatgacaaggaaggccc 303



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>gb|AF208028.1|AF208028 Arabidopsis thaliana NAD-dependent formate dehydrogenase 1A (FDH1A)
           mRNA, complete cds
          Length = 1439

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 280 cagtacatcgtcactgatgacaaggaaggccc 311



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>gb|AY054285.1| Arabidopsis thaliana AT5g14780/T9L3_80 mRNA, complete cds
          Length = 1494

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 278 cagtacatcgtcactgatgacaaggaaggccc 309



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>dbj|AK019964.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730465C04 product:ribosome
            binding protein 1, full insert sequence
          Length = 3110

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gagctggagaagcacatggc 358
            ||||||||||||||||||||
Sbjct: 2003 gagctggagaagcacatggc 2022



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>gb|AY039609.1| Arabidopsis thaliana AT5g14780/T9L3_80 mRNA, complete cds
          Length = 1443

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 282 cagtacatcgtcactgatgacaaggaaggccc 313



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>emb|AL929550.7| Mouse DNA sequence from clone RP23-77A2 on chromosome 2, complete
             sequence
          Length = 80734

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   gagctggagaagcacatggc 358
             ||||||||||||||||||||
Sbjct: 13894 gagctggagaagcacatggc 13875



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>dbj|AB023897.1| Arabidopsis thaliana fdh mRNA for formate dehydrogenase, complete
           cds
          Length = 1381

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 223 cagtacatcgtcactgatgacaaggaaggccc 254



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>gb|AF217195.1|AF217195 Arabidopsis thaliana formate dehydrogenase (FDH) mRNA, complete cds
          Length = 1490

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 282 cagtacatcgtcactgatgacaaggaaggccc 313



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>ref|NM_001003179.1| Canis familiaris ribosome receptor (P180), mRNA
          Length = 5425

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gagctggagaagcacatggc 358
            ||||||||||||||||||||
Sbjct: 4240 gagctggagaagcacatggc 4259



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>gb|AY089191.1| Arabidopsis thaliana clone 7530 mRNA, complete sequence
          Length = 1514

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 cagtacatcgtcaccgacgacaaggacggccc 331
           |||||||||||||| || |||||||| |||||
Sbjct: 282 cagtacatcgtcactgatgacaaggaaggccc 313



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>ref|XM_230637.3| PREDICTED: Rattus norvegicus ribosome binding protein 1 homolog
            180kDa (dog) (predicted) (Rrbp1_predicted), mRNA
          Length = 4826

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gagctggagaagcacatggc 358
            ||||||||||||||||||||
Sbjct: 3715 gagctggagaagcacatggc 3734



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>dbj|AK129349.1| Mus musculus mRNA for mKIAA1398 protein
          Length = 2911

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gagctggagaagcacatggc 358
            ||||||||||||||||||||
Sbjct: 1805 gagctggagaagcacatggc 1824



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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                           
Query: 255     gagaacgcgctgggcatccgcagctggctcgagtcgcagggcca 298
               ||||||| ||| ||||||||   |||||||||||| ||||||||
Sbjct: 2963241 gagaacgagctcggcatccgatcctggctcgagtcccagggcca 2963198



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>emb|X87224.1|CFP180RRC Canis familiaris mRNA for ribosome receptor, p180
          Length = 5425

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gagctggagaagcacatggc 358
            ||||||||||||||||||||
Sbjct: 4240 gagctggagaagcacatggc 4259


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,047,318
Number of Sequences: 3902068
Number of extensions: 3047318
Number of successful extensions: 51596
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51178
Number of HSP's gapped (non-prelim): 413
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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