Clone Information

BLAST Search Result

Clone Name	bast34f11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g1...	32	0.53
2	MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)	31	0.69
3	YBD2_YEAST (P38199) Hypothetical 41.7 kDa protein in RIB1-AAC2 i...	31	0.69
4	SYV_LACLA (Q9CDP6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	31	0.91
5	SOX1_MOUSE (P53783) SOX-1 protein	30	2.0
6	SYV_STRCO (O06851) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	30	2.0
7	HXC13_MOUSE (P50207) Homeobox protein Hox-C13	29	2.6
8	SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17	29	2.6
9	SOX1_HUMAN (O00570) SOX-1 protein	29	2.6
10	EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear a...	29	2.6
11	MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substra...	29	3.4
12	PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put...	29	3.4
13	PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR...	29	3.4
14	HSP70_TRIRU (O93866) Heat shock 70 kDa protein	29	3.4
15	SCNA_THITI (O66187) Thiocyanate hydrolase alpha subunit (EC 3.5....	29	3.4
16	PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS5...	28	4.5
17	PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)	28	4.5
18	PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)	28	4.5
19	GRP1_PETHY (P09789) Glycine-rich cell wall structural protein 1 ...	28	4.5
20	GRP1_ARATH (P27483) Glycine-rich cell wall structural protein pr...	28	4.5
21	PYGO1_MOUSE (Q9D0P5) Pygopus homolog 1	28	4.5
22	UVRA_YERPE (Q8ZJ07) UvrABC system protein A (UvrA protein) (Exci...	28	4.5
23	PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)	28	4.5
24	PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)	28	4.5
25	GATA4_HUMAN (P43694) Transcription factor GATA-4 (GATA-binding f...	28	4.5
26	SP8_MOUSE (Q8BMJ8) Transcription factor Sp8	28	5.9
27	MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domai...	28	5.9
28	HUNB_MANSE (Q25514) Protein hunchback (Fragment)	28	5.9
29	PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	28	5.9
30	PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	28	5.9
31	PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	28	5.9
32	HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC...	28	5.9
33	HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (...	28	5.9
34	HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K	28	5.9
35	HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (...	28	5.9
36	SYV_STRT2 (Q5M5J8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	28	5.9
37	SYV_STRT1 (Q5M111) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	28	5.9
38	SCR_DROME (P09077) Homeotic protein Sex combs reduced	28	5.9
39	ADRB1_HUMAN (P08588) Beta-1 adrenergic receptor (Beta-1 adrenoce...	28	5.9
40	IMDH_TRYBB (P50098) Inosine-5'-monophosphate dehydrogenase (EC 1...	28	5.9
41	UVRA_XANAC (Q8PN26) UvrABC system protein A (UvrA protein) (Exci...	28	5.9
42	HXD11_HUMAN (P31277) Homeobox protein Hox-D11 (Hox-4F)	28	5.9
43	UVRA_XANCP (Q8PBH3) UvrABC system protein A (UvrA protein) (Exci...	28	7.7
44	UVRA_PASMU (P57979) UvrABC system protein A (UvrA protein) (Exci...	28	7.7
45	PBP2_YEAST (P38151) PAB1-binding protein 2	28	7.7
46	SHOX2_MOUSE (P70390) Short stature homeobox protein 2 (Homeobox ...	28	7.7
47	FIBH_BOMMO (P05790) Fibroin heavy chain precursor (Fib-H) (H-fib...	28	7.7
48	HXC13_HUMAN (P31276) Homeobox protein Hox-C13 (Hox-3G)	28	7.7
49	RECA_STRLI (P48294) Protein recA (Recombinase A)	28	7.7
50	RECA_STRCO (O50487) Protein recA (Recombinase A)	28	7.7
51	UVRA_XYLFT (Q87BK9) UvrABC system protein A (UvrA protein) (Exci...	28	7.7
52	UVRA_XYLFA (Q9PAR9) UvrABC system protein A (UvrA protein) (Exci...	28	7.7
53	PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1 (...	28	7.7
54	ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoce...	28	7.7
55	LSHR_BOVIN (Q28005) Lutropin-choriogonadotropic hormone receptor...	28	7.7
56	BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)	28	7.7

>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375|
          Length = 606

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 135 RILVSDADAGCIYGRAGSAVHAMDAGSGANIKISAG 242
           ++LVS    GC+ G++GS ++ +   + ANI IS G
Sbjct: 398 QLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKG 433

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>MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)|
          Length = 1147

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = -1

Query: 269  AVRGGEGAASGGDLDVGPGAGVHGVDSGAGPA 174
            A RGG GA  GG    GPGAG  G  +G G A
Sbjct: 1051 AGRGGPGAGRGGPGMGGPGAGRGGPGAGRGAA 1082

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>YBD2_YEAST (P38199) Hypothetical 41.7 kDa protein in RIB1-AAC2 intergenic|
           region
          Length = 381

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = +3

Query: 129 HARILVSDADAGCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRVXFVSGLFP 299
           + R++V+++    I G+AG+ + ++    G  +KI A    LPA+D R+  + G FP
Sbjct: 158 YVRLIVANSHISSIIGKAGATIKSLINKHG--VKIVASKDFLPASDERIIEIQG-FP 211

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>SYV_LACLA (Q9CDP6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 880

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 103 WWRSSSPSW--EAVEVGGGEEKPMPRGWRRTE 14
           WW    P+W  EA E+  GEE P   GW + E
Sbjct: 410 WWGHQIPAWYNEAGEMYVGEEAPEGEGWTQDE 441

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>SOX1_MOUSE (P53783) SOX-1 protein|
          Length = 391

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -1

Query: 242 SGGDLDVGPGAGVHGVDSGAGPAVDAARVGVRDEDP 135
           +GG L  G G G   V  G G  V AA VG R E P
Sbjct: 138 AGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESP 173

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>SYV_STRCO (O06851) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 874

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
 Frame = -2

Query: 103 WWRSSSPSW-----EAVEVGGGEEKPMPRGW 26
           WW    P W     E V VG GEE P   GW
Sbjct: 418 WWGHRIPVWYGPEGEVVCVGPGEEPPSGEGW 448

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>HXC13_MOUSE (P50207) Homeobox protein Hox-C13|
          Length = 328

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -1

Query: 269 AVRGGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVGVRDEDPSVRRPLPHDIL 102
           A   G G   GG    G G G  G   G  P++D   +G        R  LPH +L
Sbjct: 23  AAESGSGGGGGGGGAGGAGGGCSGASPGKAPSMDG--LGGSCPASHCRDLLPHPVL 76

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>SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17|
          Length = 414

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 12  HSVRRHPLGMGFSSPPPTSTASQDGDD 92
           H  + HP G G  SPPP +   +DG D
Sbjct: 321 HQHQHHPPGPGQPSPPPEALPCRDGTD 347

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>SOX1_HUMAN (O00570) SOX-1 protein|
          Length = 387

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -1

Query: 242 SGGDLDVGPGAGVHGVDSGAGPAVDAARVGVRDEDP 135
           +GG L  G G G   V  G G  V AA VG R E P
Sbjct: 138 AGGLLAAGAGGGGAAVAMGVGVGVGAAPVGQRLESP 173

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>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)|
           (EBNA-1)
          Length = 641

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVG 153
           G  GA +GG    G GAG  G   GAG A  A   G
Sbjct: 165 GAGGAGAGGGAGAGGGAGGAGAGGGAGGAGGAGAGG 200



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVG 153
           G  GA +GG    G GAG  G   GAG A  A   G
Sbjct: 138 GAGGAGAGGGAGAGGGAGGAGAGGGAGGAGGAGAGG 173



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGAGPA 174
           GG GA   G    G GAG  G   GAG A
Sbjct: 259 GGAGAGGAGGAGAGGGAGGAGAGGGAGGA 287



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGAG 180
           GG GA   G    G GAG  G  +G G
Sbjct: 301 GGAGAGGAGGAGAGGGAGAGGAGAGGG 327

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>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (Protein kinase C substrate, 80 kDa protein, light
           chain) (PKCSL) (80K-L protein)
          Length = 331

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -1

Query: 272 PAVRGGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAA--RVGVRDEDPSVRRP 120
           PA  GG+  A+GG       AG    +  A P  +AA    G    DP   +P
Sbjct: 186 PAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKP 238

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>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 162 GCIYGRAGSAVHAMDAGSGANIKISAGGRPLP-ATDRRV 275
           GCI GR G+ ++ +   SGA IKI+    P+  +TDR+V
Sbjct: 297 GCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQV 332

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>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 162 GCIYGRAGSAVHAMDAGSGANIKISAGGRPLP-ATDRRV 275
           GCI GR G+ ++ +   SGA IKI+    P+  +TDR+V
Sbjct: 300 GCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQV 335

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>HSP70_TRIRU (O93866) Heat shock 70 kDa protein|
          Length = 654

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVGVRDEDPSV 129
           GGEG A GG     PGAG  G   G  P   A      D+ P+V
Sbjct: 613 GGEGGAPGG----FPGAGAGG--PGGFPGAGAGGAAAHDDGPTV 650

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>SCNA_THITI (O66187) Thiocyanate hydrolase alpha subunit (EC 3.5.5.8)|
          Length = 125

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 93  DRHQDVMWERPTHARILVSDADAGCIYGRAGSA 191
           D H   +W+R  HA++     D  C  G AG +
Sbjct: 2   DSHHKPVWDRTHHAKMATGIGDPQCFKGMAGKS 34

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>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor|
          Length = 1901

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 263 RGGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVG 153
           +GG G A G   D   GAG  G   G G A  A   G
Sbjct: 737 KGGTGGAGGSGADNPTGAGFAGGAGGTGGAAGAGGAG 773



 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -1

Query: 260  GGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVG--VRDEDPSV 129
            GG+G   G   + G GAGV G D G G    A   G    D DPS+
Sbjct: 1694 GGQGGIGGAGGNAGFGAGVPG-DGGIGGTGGAGGAGGAGADGDPSI 1738



 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -1

Query: 260  GGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVG--VRDEDPSV 129
            GG+G   G   + G GAGV G D G G    A   G    D DPS+
Sbjct: 1489 GGQGGIGGAGGNAGFGAGVPG-DGGIGGTGGAGGAGGAGADGDPSI 1533



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 263  RGGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVGV 150
            +GG G AS   ++   GAG +G   G G A  A  +GV
Sbjct: 1128 QGGLGGASTTSINANGGAGGNGGTGGKGGAGGAGTLGV 1165



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 263  RGGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVGV 150
            +GG G AS   ++   GAG +G   G G A  A  +GV
Sbjct: 927  QGGLGGASTTSINANGGAGGNGGTGGKGGAGGAGTLGV 964



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVG 153
           GG GA +   +    GAG  G ++GAG A  AA  G
Sbjct: 453 GGSGADNASGIGADGGAGGTGGNAGAGGAGGAAGTG 488

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>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 126 THARILVSDADAGCIYGRAGSAVHAMDAGSGANIKIS 236
           TH   + +D   GCI GR G+ ++ +   SGA IKI+
Sbjct: 263 THELTIPNDL-IGCIIGRQGTKINEIRQMSGAQIKIA 298

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>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 126 THARILVSDADAGCIYGRAGSAVHAMDAGSGANIKIS 236
           TH   + +D   GCI GR G+ ++ +   SGA IKI+
Sbjct: 263 THELTIPNDL-IGCIIGRQGTKINEIRQMSGAQIKIA 298

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>GRP1_PETHY (P09789) Glycine-rich cell wall structural protein 1 precursor|
          Length = 384

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 266 VRGGEGAASGGDLDVGPGAGVHGVDSGAGPAV 171
           V GG G  SGG   +G G+G HG   GAG  V
Sbjct: 211 VGGGGGGGSGGGGGIGGGSG-HGGGFGAGGGV 241

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>GRP1_ARATH (P27483) Glycine-rich cell wall structural protein precursor|
          Length = 349

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 266 VRGGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVG 153
           + GG G  SGG L  G G G  G   G G A     +G
Sbjct: 187 IGGGAGGGSGGGLGGGIGGGAGGGAGGGGGAGGGGGLG 224

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>PYGO1_MOUSE (Q9D0P5) Pygopus homolog 1|
          Length = 417

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 9   PHSVRRHPLGMGFSSPPPTSTASQDGDDDRHQDVMWERPTHARILVSDADAGCIYGRAGS 188
           PH   ++PLGMGF+ P   +    D  +       +  P +  +L  D +    + R GS
Sbjct: 128 PHPFPQNPLGMGFNRPHAFNFGPHDNSN-------FGNPPYNNVLTQDINMPGQHFRQGS 180

Query: 189 A 191
           A
Sbjct: 181 A 181

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>UVRA_YERPE (Q8ZJ07) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 947

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 230 LDVGPGAGVHGVDSGAGPAVD 168
           +D+GPGAGVHG +  A   VD
Sbjct: 558 IDIGPGAGVHGGEVVAEGTVD 578

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>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 141 LVSDADAGCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRV 275
           LV +   GC+ GR GS +  +   SGA+IKI  G +   A +R V
Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERHV 289

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>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 141 LVSDADAGCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRV 275
           LV +   GC+ GR GS +  +   SGA+IKI  G +   A +R V
Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERHV 289

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>GATA4_HUMAN (P43694) Transcription factor GATA-4 (GATA-binding factor 4)|
          Length = 442

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVG 153
           GG G+ASGG     PG    G  SGAGP       G
Sbjct: 57  GGAGSASGGPSGGSPG----GAASGAGPGTQQGSPG 88

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>SP8_MOUSE (Q8BMJ8) Transcription factor Sp8|
          Length = 486

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 272 PAVRGGEGAASGGDLDVGPGAGVHGVDSGAGP 177
           P V GG G   GG    G G+G H  DS   P
Sbjct: 131 PGVSGGSGGGGGGG---GGGSGAHSQDSSHQP 159

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>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor|
           (EGF-like domain-containing protein 5) (Multiple
           EGF-like domain protein 5)
          Length = 600

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = -1

Query: 266 VRGGEGAASGGDLDVGPGAGVHGVDS-----GAGPAVDAARVGVRDEDPSVRRPL 117
           V GG GAA  G +D  PG G+ G  S        P   A R G      +V RPL
Sbjct: 39  VTGGGGAA--GQVDASPGPGLRGEPSHPFPRATAPTAQAPRTG--PPRATVHRPL 89

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>HUNB_MANSE (Q25514) Protein hunchback (Fragment)|
          Length = 327

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 25/85 (29%), Positives = 29/85 (34%)
 Frame = +3

Query: 15  SVRRHPLGMGFSSPPPTSTASQDGDDDRHQDVMWERPTHARILVSDADAGCIYGRAGSAV 194
           S    PL  G +SPPP S  S           + + PTH               R     
Sbjct: 179 SYTERPLESGSTSPPPKSPPS-----------ITQTPTH---------------REMPTE 212

Query: 195 HAMDAGSGANIKISAGGRPLPATDR 269
           H  DA    N K S  G P P T+R
Sbjct: 213 HGDDALDLTNAKTSEAGTPPPPTER 237

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>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 162 GCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRVXFVSG 290
           GCI GR G+ ++ +   SGA IKI+    P+  +  R   ++G
Sbjct: 292 GCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331

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>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 162 GCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRVXFVSG 290
           GCI GR G+ ++ +   SGA IKI+    P+  +  R   ++G
Sbjct: 292 GCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331

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>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 162 GCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRVXFVSG 290
           GCI GR G+ ++ +   SGA IKI+    P+  +  R   ++G
Sbjct: 292 GCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331

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>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC|
           stretch-binding protein) (CSBP)
          Length = 463

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 159 AGCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRVXFVSG 290
           AG I G+ G  +  +   SGA+IKI     PL  ++ R+  ++G
Sbjct: 399 AGSIIGKGGQRIKQIRHESGASIKID---EPLEGSEDRIITITG 439

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>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
          Length = 463

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 159 AGCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRVXFVSG 290
           AG I G+ G  +  +   SGA+IKI     PL  ++ R+  ++G
Sbjct: 399 AGSIIGKGGQRIKQIRHESGASIKID---EPLEGSEDRIITITG 439

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>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K|
          Length = 463

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 159 AGCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRVXFVSG 290
           AG I G+ G  +  +   SGA+IKI     PL  ++ R+  ++G
Sbjct: 399 AGSIIGKGGQRIKQIRHESGASIKID---EPLEGSEDRIITITG 439

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>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
           (Transformation up-regulated nuclear protein) (TUNP)
          Length = 463

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 159 AGCIYGRAGSAVHAMDAGSGANIKISAGGRPLPATDRRVXFVSG 290
           AG I G+ G  +  +   SGA+IKI     PL  ++ R+  ++G
Sbjct: 399 AGSIIGKGGQRIKQIRHESGASIKID---EPLEGSEDRIITITG 439

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>SYV_STRT2 (Q5M5J8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 883

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 103 WWRSSSPSWEAVE--VGGGEEKPMPRGWRRTE 14
           WW    P+W   E  +  GEE P   GW++ E
Sbjct: 410 WWGHQIPAWYNAEGEIYVGEEAPEGDGWKQDE 441

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>SYV_STRT1 (Q5M111) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 883

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 103 WWRSSSPSWEAVE--VGGGEEKPMPRGWRRTE 14
           WW    P+W   E  +  GEE P   GW++ E
Sbjct: 410 WWGHQIPAWYNAEGEIYVGEEAPEGDGWKQDE 441

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>SCR_DROME (P09077) Homeotic protein Sex combs reduced|
          Length = 417

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVGVRDEDPSVRRPLPH 111
           GG G  +GG   V P  G +G    AG    AA  G  D  P+     P+
Sbjct: 40  GGSGGGAGGSGGVVPSGGTNGGQGSAG----AATPGANDYFPAAAAYTPN 85

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>ADRB1_HUMAN (P08588) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 477

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +3

Query: 54  PPPTSTASQDGDDDRHQDVMWERPTHARILVSDADAGCIYGRAGSAVHAMD 206
           PPP+  A+ D DDD   DV+   P  AR+L  +  AGC  G A  +  ++D
Sbjct: 420 PPPSPGAASDDDDD---DVVGATPP-ARLL--EPWAGCNGGAAADSDSSLD 464

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>IMDH_TRYBB (P50098) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 512

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 66  RSAAARRSPCRGDGGVQNGGEV 1
           R AA+R  PC  DGG++N G+V
Sbjct: 346 RYAASRGVPCVADGGLRNVGDV 367

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>UVRA_XANAC (Q8PN26) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 987

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 230 LDVGPGAGVHGVDSGAGPAVD 168
           LD+GPGAGVHG +  A   +D
Sbjct: 560 LDIGPGAGVHGGEICAQGTLD 580

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>HXD11_HUMAN (P31277) Homeobox protein Hox-D11 (Hox-4F)|
          Length = 338

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 260 GGEGAASGGDLDVGPGAGVHGVDSGA---GPAVDAARVGVRDEDPSVRRPL 117
           GG G+A GG    GPG G  G    A     A  AA      E+ +++R L
Sbjct: 79  GGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQREL 129

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>UVRA_XANCP (Q8PBH3) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 988

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -1

Query: 230 LDVGPGAGVHG 198
           LD+GPGAGVHG
Sbjct: 560 LDIGPGAGVHG 570

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>UVRA_PASMU (P57979) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 943

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -1

Query: 230 LDVGPGAGVHG---VDSGAGPAVDA 165
           +D+GPGAGVHG   V  G+  A+ A
Sbjct: 558 IDIGPGAGVHGGQIVAEGSAKAIMA 582

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>PBP2_YEAST (P38151) PAB1-binding protein 2|
          Length = 413

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = +3

Query: 87  DDDRHQDVMWERP------THARILVSDADAGCIYGRAGSAVHAMDAGSGANIKISAGGR 248
           D D H D   + P       H R+L     A  I G  G+ +  + + + A I IS   R
Sbjct: 48  DADSHSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIR 107

Query: 249 PLPATDRRVXFVSG 290
            +P    R+ +V G
Sbjct: 108 GVP---ERIVYVRG 118

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>SHOX2_MOUSE (P70390) Short stature homeobox protein 2 (Homeobox protein Og12X)|
           (OG-12) (Paired family homeodomain protein Prx3)
          Length = 331

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
 Frame = -1

Query: 272 PAVR-----GGEGAASGGDLDVGPGAGVHGVDSGAG 180
           PAVR     GG G   GG    G GAG  G   GAG
Sbjct: 53  PAVRAAGGGGGAGGGGGGGGGGGGGAGGGGAGGGAG 88

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>FIBH_BOMMO (P05790) Fibroin heavy chain precursor (Fib-H) (H-fibroin)|
          Length = 5263

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -1

Query: 257  GEGAASGGDLDVGPGAGVHGVDSGAGPAVDA 165
            G GAASG     G GAG  G  +GAG    A
Sbjct: 3197 GSGAASGAGAGAGSGAGA-GTGAGAGSGAGA 3226

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>HXC13_HUMAN (P31276) Homeobox protein Hox-C13 (Hox-3G)|
          Length = 330

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -1

Query: 257 GEGAASGGDLDVGPGAGVHGVDSGAGPAVDAARVGVRDEDPSVRRPLPHDIL 102
           G G   GG    G G G  G   G  P++D   +G        R  LPH +L
Sbjct: 29  GGGGGGGGGGTGGAGGGCSGASPGKAPSMDG--LGSSCPASHCRDLLPHPVL 78

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>RECA_STRLI (P48294) Protein recA (Recombinase A)|
          Length = 374

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 215 GAGVHGVDSGAGPAVDAARVGVRDEDPSVRRP 120
           G GVH  +S   P  DAA     D  P+V  P
Sbjct: 328 GVGVHPEESATEPGADAASAAPADAAPAVPAP 359

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>RECA_STRCO (O50487) Protein recA (Recombinase A)|
          Length = 374

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 215 GAGVHGVDSGAGPAVDAARVGVRDEDPSVRRP 120
           G GVH  +S   P  DAA     D  P+V  P
Sbjct: 328 GVGVHPEESATEPGADAASAAPADAAPAVPAP 359

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>UVRA_XYLFT (Q87BK9) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 965

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -1

Query: 230 LDVGPGAGVHG 198
           LD+GPGAGVHG
Sbjct: 559 LDIGPGAGVHG 569

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>UVRA_XYLFA (Q9PAR9) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 965

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -1

Query: 230 LDVGPGAGVHG 198
           LD+GPGAGVHG
Sbjct: 559 LDIGPGAGVHG 569

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>PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1|
           (Pseudo-response regulator 1) (OsPRR1)
          Length = 518

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +3

Query: 51  SPPPTSTASQDGDDDRHQDVMWERPTHARILVSDADAGCIYGRAGSAVHAMDAGSGANIK 230
           +P     +++ GD      VM+ RP    + V+++ A   Y ++ +        S  + +
Sbjct: 221 TPEGLLVSTEGGDQASSPGVMFSRPIKTNLRVAESSAFLAYVKSST-----PTTSSFDSE 275

Query: 231 ISAGGRPLPATDRRVXFVS 287
           +  GG  L ++D R  F S
Sbjct: 276 LQKGGNRLDSSDHRGNFSS 294

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>ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 473

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 54  PPPTSTASQDGDDDRHQDVMWERPTHARILVSDADAGCIYGRAGSAVHAMD-AGSGA 221
           PPP+  A+ D DDD   D            + +  AGC  G A  +  ++D AGS A
Sbjct: 410 PPPSPGAASDDDDDDEDDAGAGAGAAPPARLLEPWAGCNGGAAADSDSSLDGAGSPA 466

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>LSHR_BOVIN (Q28005) Lutropin-choriogonadotropic hormone receptor precursor|
           (LH/CG-R) (LSH-R) (Luteinizing hormone receptor)
          Length = 701

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
 Frame = -2

Query: 250 GRPPAEI-----LMLAPEPASMAWTAEPALP*MQPASASETRILACVG 122
           GRP   +     L+L P PA + W   PA P  +P S      L C G
Sbjct: 2   GRPSLALRLLLALLLLPPPAPLLWALRPA-PCPEPCSCPPDGALRCPG 48

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>BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)|
          Length = 645

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 22/88 (25%), Positives = 31/88 (35%)
 Frame = +3

Query: 9   PHSVRRHPLGMGFSSPPPTSTASQDGDDDRHQDVMWERPTHARILVSDADAGCIYGRAGS 188
           P +   HP  +G   P P S A                 T +R +++D  AG     A +
Sbjct: 20  PSATAHHPAAVGGGMPRPASPAVGSNTTTATATT----ATRSRFMITDILAGAAAASAAA 75

Query: 189 AVHAMDAGSGANIKISAGGRPLPATDRR 272
           A  A    + +    S GGR  P    R
Sbjct: 76  AAAAAALAAAS----SGGGRGSPTDSER 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,672,578
Number of Sequences: 219361
Number of extensions: 728595
Number of successful extensions: 5009
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 3792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4859
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result