ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast34d04 |
|---|---|
| Clone Library Name | barley_pub |
>GLMM_SILPO (Q5LTP9) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 448 Score = 32.3 bits (72), Expect = 0.29 Identities = 30/100 (30%), Positives = 45/100 (45%) Frame = -2 Query: 315 LDEAGSRHARGREEEALLNVVAREHGHVGDGQLEVSNRLSALRQNQMLGDHGDGRRWRAR 136 +D+ G+ A G + ALL G + G L V+ +S L + LGD G G A Sbjct: 250 IDQLGNV-ADGDQIMALLAARWAAEGRLQGGAL-VATVMSNLGLERFLGDRGIGLERTAV 307 Query: 135 ANQLVXXXXXXXXRSLHQDVGGDQRSHLNWSGFCSLGDGV 16 ++ V +L GG+Q H+ S F + GDG+ Sbjct: 308 GDRYVVERMREGGFNL----GGEQSGHIVMSDFATTGDGL 343
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 32.3 bits (72), Expect = 0.29 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = -2 Query: 333 QRQQERLDEAGSRHARGREEEALLNVVAREHGHVGDGQLE----VSNRLSALRQNQMLGD 166 Q + E+ GSRH+ R EA + H VG GQ N+ S++ Q+ Sbjct: 1867 QTRNEKQSGDGSRHSGSRHHEASSRADSSRHSQVGQGQSSGPRTSRNQGSSVSQDSDSQG 1926 Query: 165 HG-DGRRWRARANQ 127 H D RW A++ Sbjct: 1927 HSEDSERWSGSASR 1940 Score = 30.8 bits (68), Expect = 0.85 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%) Frame = -2 Query: 351 HPERAGQRQQERLDEA---GSRHARGREEEALLNVVAREHGHVGDGQLE----VSNRLSA 193 H +Q R DE GSRH+ R EA + H VG GQ E N S+ Sbjct: 2507 HSGSRSASRQTRNDEQSGDGSRHSGSRHHEASSRADSSGHSQVGQGQSEGPRTSRNWGSS 2566 Query: 192 LRQNQMLGDHG-DGRRWRARANQ 127 Q+ H D RW A++ Sbjct: 2567 FSQDSDSQGHSEDSERWSGSASR 2589 Score = 30.8 bits (68), Expect = 0.85 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Frame = -2 Query: 327 QQERLDEAGSRHARGREEEALLNVVAREHGHVGDGQLEVSNR-----LSALRQNQMLGDH 163 + E GSRH+ R EA + H G GQ E S S + + G Sbjct: 897 RNEEQSRDGSRHSGSRHHEASSHADISRHSQAGQGQSEGSRTSRRQGSSVSQDSDSEGHS 956 Query: 162 GDGRRWRARANQ 127 D RW A++ Sbjct: 957 EDSERWSGSASR 968 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Frame = -2 Query: 333 QRQQERLDEAGSRHARGREEEALLNVVAREHGHVGDGQLE----VSNRLSALRQNQMLGD 166 Q + E G+RH+ R EA + H VG GQ N+ S++ Q+ Sbjct: 570 QTRNEEQSGDGTRHSGSRHHEASSQADSSRHSQVGQGQSSGPRTSRNQGSSVSQDSDSQG 629 Query: 165 HG-DGRRWRARANQ 127 H D RW A++ Sbjct: 630 HSEDSERWSGSASR 643
>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1268 Score = 31.2 bits (69), Expect = 0.65 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 8/45 (17%) Frame = -1 Query: 205 PAERPPAEPDAWRPRRWSALARSRKPVGLAR--------PWTGPA 95 PAE PA+ P RWS R K G + PW GPA Sbjct: 1060 PAEYSPAQAQCLIPERWSTPQRDVKCAGASEERTACVWGPWAGPA 1104
>CHEB3_RHOSH (O33558) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 369 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 10/76 (13%) Frame = +1 Query: 10 LCDAIAERAEAT---------PVKMAPLITADVLVEAAPAPSMAVLNQLVCASAPT-PTI 159 +CDAI E T P+ P +TAD ++ A P + +VC A T T Sbjct: 129 ICDAIRAATETTRRRSQPEPRPLAPGPKLTADEILPARPPRPVPETMPVVCIGASTGGTE 188 Query: 160 AVVSKHLVLPEGAQPV 207 A+ LP A P+ Sbjct: 189 ALRDVLTALPASAPPI 204
>CHEB1_RHOS4 (Q3J653) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 369 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 10/76 (13%) Frame = +1 Query: 10 LCDAIAERAEAT---------PVKMAPLITADVLVEAAPAPSMAVLNQLVCASAPT-PTI 159 +CDAI E T P+ P +TAD ++ A P + +VC A T T Sbjct: 129 ICDAIRAATETTRRRSQPEPRPLAPGPKLTADEILPARPPRPVPETMPVVCIGASTGGTE 188 Query: 160 AVVSKHLVLPEGAQPV 207 A+ LP A P+ Sbjct: 189 ALRDVLTALPASAPPI 204
>TCF20_HUMAN (Q9UGU0) Transcription factor 20 (Stromelysin 1 PDGF-responsive| element-binding protein) (SPRE-binding protein) (Nuclear factor SPBP) (AR1) Length = 1960 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +1 Query: 97 PAPSMAVLNQLVCASAPTPTIAVVSKHLVLPEGAQPVGDLKLSVSDMPMLS 249 P+P+ +V+ C+S P+P + ++L +G+ P+G + MP LS Sbjct: 370 PSPAASVVQSPSCSSTPSP-LMQTGENLQCGQGSVPMGSRNRILQLMPQLS 419
>HMDH2_GOSHI (O64967) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC| 1.1.1.34) (HMG-CoA reductase 2) Length = 628 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = -3 Query: 107 DGAGAASTKTSAVISGAILTGVASALSAMASHKM 6 D AGA S + +++GA+L G S +SA+A+ ++ Sbjct: 576 DVAGANSRMLATIVTGAVLAGELSLMSALAAGQL 609
>TF65_HUMAN (Q04206) Transcription factor p65 (Nuclear factor NF-kappa-B p65| subunit) Length = 551 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +1 Query: 34 AEATPVKMAPLITADVLVEA-APAPSMAVLNQLVCASAPTPTIAVVSKHLVLPEGAQP 204 ++A+ + AP VL +A APAP+ A+++ L A AP P +A V P +P Sbjct: 374 SQASALAPAP---PQVLPQAPAPAPAPAMVSALAQAPAPVPVLAPGPPQAVAPPAPKP 428
>EFGL_SYNY3 (Q55421) Elongation factor G-like protein| Length = 669 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +1 Query: 76 DVLVEAAPAPSMAVLNQLVCASAPTPTIAVVSKHLVLPEG 195 DVL++ AP PS+ + + P IA V K P+G Sbjct: 269 DVLIKEAPDPSVTAARRSLSTDGSGPVIAQVLKTYFTPQG 308
>T2_MOUSE (Q06666) Octapeptide-repeat protein T2| Length = 185 Score = 28.9 bits (63), Expect = 3.2 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Frame = -2 Query: 354 KHPERAGQRQQERLDEAGSRHARGREEEALLNVVA-REHGHVGDG---QLEVSNRLSALR 187 + ER +RQ+ER + RGRE E A ++ G G + E R +R Sbjct: 109 REAERQRERQRERQRGREAERQRGREAERQRGREAEKQRGERQRGREVEAEAEGRGRGMR 168 Query: 186 QNQMLGDHGDGRRWRAR 136 Q + G G+R R R Sbjct: 169 QEAEATEQGQGQRQRQR 185
>NUMA1_HUMAN (Q14980) Nuclear mitotic apparatus protein 1 (NuMA protein) (SP-H| antigen) Length = 2115 Score = 28.9 bits (63), Expect = 3.2 Identities = 25/76 (32%), Positives = 33/76 (43%) Frame = -2 Query: 354 KHPERAGQRQQERLDEAGSRHARGREEEALLNVVAREHGHVGDGQLEVSNRLSALRQNQM 175 K P RAG RQ E L+E R + +A L + RE +G+ +LE Q Q Sbjct: 939 KEPARAGDRQPEWLEEQQGR--QFCSTQAALQAMEREAEQMGN-ELERLRAALMESQGQQ 995 Query: 174 LGDHGDGRRWRARANQ 127 + G R AR Q Sbjct: 996 QEERGQQEREVARLTQ 1011
>LCMT2_MOUSE (Q8BYR1) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)| (p21WAF1/CIP1 promoter-interacting protein) Length = 686 Score = 28.5 bits (62), Expect = 4.2 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%) Frame = -3 Query: 236 MSETDSLRSPTG*---APSGRTRCLETTAMVGVGA-LAQTSWFSTAMDGAGAASTKTSAV 69 + ET LR+ TG S + C E+ +GA L + A+ GAG +T + + Sbjct: 126 IEETPELRAQTGPFKIGDSASSLCFESADYRILGADLRELQRLGEALHGAGLDATSPTLL 185 Query: 68 ISGAILT----GVASALSAMASHK 9 ++ A+LT A+AL A A+ + Sbjct: 186 LAEAVLTYLEPSSATALIAWAAQR 209
>JMT_ARATH (Q9AR07) Jasmonate O-methyltransferase (EC 2.1.1.141)| (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) Length = 389 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Frame = +1 Query: 127 LVCASAPTPTIAVVSK----HLVLPEGAQPVGDLKLSVSDMPMLSCHYI 261 L C+S P +++ + H + P+ +PV +L++S++D+P +YI Sbjct: 58 LGCSSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYI 106
>ZXDB_HUMAN (P98169) Zinc finger X-linked protein ZXDB| Length = 803 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -3 Query: 128 SWFSTAMDGAGAASTKTSAVISGAILTGVASALSAMASH 12 S FS D AA T+ V SG + VAS S +A H Sbjct: 609 SLFSDVPDSTSAALLDTALVNSGILTIDVASVSSTLAGH 647
>ZXDA_HUMAN (P98168) Zinc finger X-linked protein ZXDA| Length = 799 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -3 Query: 128 SWFSTAMDGAGAASTKTSAVISGAILTGVASALSAMASH 12 S FS D AA T+ V SG + VAS S +A H Sbjct: 605 SLFSDVPDSTSAALLDTALVNSGILTIDVASVSSTLAGH 643
>HES5_MOUSE (P70120) Transcription factor HES-5 (Hairy and enhancer of split 5)| Length = 167 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 7/40 (17%) Frame = -1 Query: 205 PAERPPAEPDAWRPRRWS------ALARSRKPV-GLARPW 107 PA+ PPA A +P R S A++ SR+P GL RPW Sbjct: 128 PAKEPPAPGAAPQPARSSAKAAAAAVSTSRQPACGLWRPW 167
>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 Score = 27.7 bits (60), Expect = 7.2 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Frame = -2 Query: 357 RKHPERAGQRQQERLDEAGSRH-ARGREEEALLNVVARE----------HGHVGDGQLEV 211 R+ R G + L AG R RG + A + + R G +G+G E Sbjct: 2006 RRGELRRGSSAESALPRAGPRELGRGLHKAASVELPQRRSPGPGATRLARGGLGEG--EY 2063 Query: 210 SNRLSALRQNQMLGDHGDGR 151 + RL ALRQ + G DG+ Sbjct: 2064 AQRLQALRQRLLRGGPEDGK 2083 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -1 Query: 202 AERPPAEPDAWRPRRWSALARSRKPVGLARPWTGPAQ 92 A +PP+ A +P RSR P G P GP Q Sbjct: 552 AAQPPSPSSAEKPGDEPGRPRSRGPAGRTEPGEGPQQ 588
>MOT6_HUMAN (O15375) Monocarboxylate transporter 6 (MCT 6) (MCT 5)| Length = 505 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +1 Query: 19 AIAERAEATPVKMAPLITADVLVEAAPAPSMAVLNQLVCASAPTPTIAVVSKHL 180 A+ ++ + A + D+ +EA P +++C S+ P A V+KHL Sbjct: 418 ALQKKEQGKQAVAADALERDLFLEAKDGPGKQRSPEIMCQSSRQPRPAGVNKHL 471
>GCP3_DROME (Q9XYP8) Gamma-tubulin complex component 3 homolog (Gamma ring| complex protein 91) (dGrip91) (d91p) Length = 917 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -3 Query: 107 DGAGAASTKTSAVISG-AILTGVASALSAMASH 12 +G GAA+ +A ++G A +TG A+ A ASH Sbjct: 167 NGVGAAAVTGAAAVTGAAAVTGAAAVTGAAASH 199
>GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor| Length = 572 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +1 Query: 94 APAPSMAVLNQLVCASAPTPTIAVVSKHLVLPEGAQPVGDLKLSVSDMPMLSCHYIQKGL 273 +P PS + AS+P+PT++ S L+ P G + +SD+ +C + G Sbjct: 325 SPTPSPSSSTSPSPASSPSPTLSTPSPSLM------PTGHKSMELSDISNENCRINRYGY 378 Query: 274 F 276 F Sbjct: 379 F 379
>IE63_HHV7J (P52355) Transcriptional regulator IE63 homolog| Length = 526 Score = 27.3 bits (59), Expect = 9.4 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 146 QRRPSPWSPSIWFC 187 QR SPW PS++FC Sbjct: 356 QRMMSPWKPSLYFC 369
>GLGB_PSEPK (Q88FN1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 736 Score = 27.3 bits (59), Expect = 9.4 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 19/105 (18%) Frame = -2 Query: 264 LNVVAREHGHVGDGQLEVSNRLSALRQNQMLGDHGDGR---------------RWRARAN 130 +NV RE+G + L+ R +LG HGDG R +AR + Sbjct: 1 MNVTTRENGGLRQRDLDALARAEHADPFAVLGPHGDGAGGQVVRAFLPNALKVRIQARDD 60 Query: 129 QLVXXXXXXXX----RSLHQDVGGDQRSHLNWSGFCSLGDGVTQD 7 V S H D + H+ W+G G+ VT+D Sbjct: 61 GRVLAEMEQGSLPGLFSAHLDKAQPYQLHIVWAG----GEQVTED 101
>ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (Deleted in U| twenty twenty) Length = 1651 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +1 Query: 175 HLVLPEGAQPVGDLKLS--VSDMPMLSCHYIQKGLFFTPAGMPTARLVKSLLLS 330 +L+LPE GD+ LS +++M + ++ G F P+G PT L+ S Sbjct: 1029 NLMLPESTV-YGDVDLSNKINEMKTFNSPNLKDGRFVNPSGQPTPYATTQLIQS 1081
>MYO1_SCHPO (Q9Y7Z8) Myosin-1| Length = 1217 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Frame = +1 Query: 34 AEATPVKMA-PLITADVLVEAAPAPSMAVLNQLVCASAPTPTIAVVSKHLVLPEGAQPVG 210 A++ P MA P+ TA PAP+M A+AP + K ++P Sbjct: 1005 AKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAP 1064 Query: 211 DLKLSVSDMP 240 S + P Sbjct: 1065 STVTSAASSP 1074 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,059,307 Number of Sequences: 219361 Number of extensions: 924625 Number of successful extensions: 3566 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3557 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
