| Clone Name | bast34b02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G12, full insert sequence Length = 1316 Score = 97.6 bits (49), Expect = 3e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 288 aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccatcgctggcctg 347 |||||||||| | |||| ||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 333 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccatagctggactg 392 Query: 348 ttcctgggagccgtcaccggcgggctcatcgggctggccac 388 || || ||||| || || |||||||| |||||||||||||| Sbjct: 393 tttcttggagcggtgactggcgggctgatcgggctggccac 433
>dbj|AK061850.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F07, full insert sequence Length = 1202 Score = 97.6 bits (49), Expect = 3e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 288 aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccatcgctggcctg 347 |||||||||| | |||| ||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 227 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccatagctggactg 286 Query: 348 ttcctgggagccgtcaccggcgggctcatcgggctggccac 388 || || ||||| || || |||||||| |||||||||||||| Sbjct: 287 tttcttggagcggtgactggcgggctgatcgggctggccac 327
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence Length = 143507 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccat 337 |||||||||| | |||| ||||||| ||||||||||||||||||||||| Sbjct: 58096 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccat 58145 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 339 gctggcctgttcctgggagccgtcaccggcgggctcatcgggctggccac 388 ||||| ||||| || ||||| || || |||||||| |||||||||||||| Sbjct: 59069 gctggactgtttcttggagcggtgactggcgggctgatcgggctggccac 59118
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccat 337 |||||||||| | |||| ||||||| ||||||||||||||||||||||| Sbjct: 29977399 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccat 29977448 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 339 gctggcctgttcctgggagccgtcaccggcgggctcatcgggctggccac 388 ||||| ||||| || ||||| || || |||||||| |||||||||||||| Sbjct: 29978372 gctggactgtttcttggagcggtgactggcgggctgatcgggctggccac 29978421
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541C02 Length = 150660 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 288 aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccat 337 |||||||||| | |||| ||||||| ||||||||||||||||||||||| Sbjct: 53547 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccat 53596 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Plus Query: 339 gctggcctgttcctgggagccgtcaccggcgggctcatcgggctggccac 388 ||||| ||||| || ||||| || || |||||||| |||||||||||||| Sbjct: 54520 gctggactgtttcttggagcggtgactggcgggctgatcgggctggccac 54569
>dbj|AK111417.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G04, full insert sequence Length = 2166 Score = 44.1 bits (22), Expect = 0.33 Identities = 43/50 (86%) Strand = Plus / Minus Query: 339 gctggcctgttcctgggagccgtcaccggcgggctcatcgggctggccac 388 ||||| ||||| || ||||| || || |||||||| |||||||||||||| Sbjct: 2078 gctggactgtttcttggagcggtgactggcgggctgatcgggctggccac 2029
>ref|XM_483676.1| Oryza sativa (japonica cultivar-group), mRNA Length = 783 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 tcaccggcgggctcatcgggctggc 385 ||||||||||||| ||||||||||| Sbjct: 191 tcaccggcgggctgatcgggctggc 215
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 tcaccggcgggctcatcgggctggc 385 ||||||||||||| ||||||||||| Sbjct: 27596243 tcaccggcgggctgatcgggctggc 27596219
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 cctcctcctcggatccctcgc 57 ||||||||||||||||||||| Sbjct: 41713435 cctcctcctcggatccctcgc 41713415
>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466H10 Length = 176530 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 cctcctcctcggatccctcgc 57 ||||||||||||||||||||| Sbjct: 129037 cctcctcctcggatccctcgc 129017
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 tcaccggcgggctcatcgggctggc 385 ||||||||||||| ||||||||||| Sbjct: 78533 tcaccggcgggctgatcgggctggc 78509
>dbj|AK105338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F06, full insert sequence Length = 1246 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 tcaccggcgggctcatcgggctggc 385 ||||||||||||| ||||||||||| Sbjct: 344 tcaccggcgggctgatcgggctggc 368
>dbj|AK067368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104L18, full insert sequence Length = 1321 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 cctcctcctcggatccctcgc 57 ||||||||||||||||||||| Sbjct: 223 cctcctcctcggatccctcgc 243
>ref|XM_463784.1| Oryza sativa (japonica cultivar-group), mRNA Length = 531 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gctccgccgaccggcctgct 90 |||||||||||||||||||| Sbjct: 178 gctccgccgaccggcctgct 159
>ref|XM_366583.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02659.4) partial mRNA Length = 441 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cgtcctcgtcgattggccctcctc 43 ||||||||||||| |||||||||| Sbjct: 126 cgtcctcgtcgatgggccctcctc 149
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 cttcgccatcgctggcctgt 348 |||||||||||||||||||| Sbjct: 614556 cttcgccatcgctggcctgt 614575
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gctccgccgaccggcctgct 90 |||||||||||||||||||| Sbjct: 114804 gctccgccgaccggcctgct 114785
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ccgtcaccggcgggctcatcgggc 381 |||||||||||||||| ||||||| Sbjct: 4953197 ccgtcaccggcgggctgatcgggc 4953174
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gctccgccgaccggcctgct 90 |||||||||||||||||||| Sbjct: 109413 gctccgccgaccggcctgct 109394
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gctccgccgaccggcctgct 90 |||||||||||||||||||| Sbjct: 63831 gctccgccgaccggcctgct 63812
>gb|AY850337.1| Magnaporthe grisea 60S ribosomal protein L14-A-like protein mRNA, complete cds Length = 1093 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cgtcctcgtcgattggccctcctc 43 ||||||||||||| |||||||||| Sbjct: 248 cgtcctcgtcgatgggccctcctc 271 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,738,746 Number of Sequences: 3902068 Number of extensions: 1738746 Number of successful extensions: 34074 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33868 Number of HSP's gapped (non-prelim): 206 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)