ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast34b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
2dbj|AK061850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
3gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 60 6e-06
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
5dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
6dbj|AK111417.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
7ref|XM_483676.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
10dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
11dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
12dbj|AK105338.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
13dbj|AK067368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
14ref|XM_463784.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
15ref|XM_366583.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 40 5.2
16emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 5.2
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
18dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.2
19dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
20dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
21gb|AY850337.1| Magnaporthe grisea 60S ribosomal protein L14-A-li... 40 5.2

>dbj|AK067113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G12, full
           insert sequence
          Length = 1316

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                       
Query: 288 aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccatcgctggcctg 347
           |||||||||| | ||||  ||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 333 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccatagctggactg 392

                                                    
Query: 348 ttcctgggagccgtcaccggcgggctcatcgggctggccac 388
           || || ||||| || || |||||||| ||||||||||||||
Sbjct: 393 tttcttggagcggtgactggcgggctgatcgggctggccac 433



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>dbj|AK061850.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F07, full
           insert sequence
          Length = 1202

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                       
Query: 288 aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccatcgctggcctg 347
           |||||||||| | ||||  ||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 227 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccatagctggactg 286

                                                    
Query: 348 ttcctgggagccgtcaccggcgggctcatcgggctggccac 388
           || || ||||| || || |||||||| ||||||||||||||
Sbjct: 287 tttcttggagcggtgactggcgggctgatcgggctggccac 327



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>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
             sequence
          Length = 143507

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 288   aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccat 337
             |||||||||| | ||||  ||||||| |||||||||||||||||||||||
Sbjct: 58096 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccat 58145



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 339   gctggcctgttcctgggagccgtcaccggcgggctcatcgggctggccac 388
             ||||| ||||| || ||||| || || |||||||| ||||||||||||||
Sbjct: 59069 gctggactgtttcttggagcggtgactggcgggctgatcgggctggccac 59118



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 288      aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccat 337
                |||||||||| | ||||  ||||||| |||||||||||||||||||||||
Sbjct: 29977399 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccat 29977448



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 339      gctggcctgttcctgggagccgtcaccggcgggctcatcgggctggccac 388
                ||||| ||||| || ||||| || || |||||||| ||||||||||||||
Sbjct: 29978372 gctggactgtttcttggagcggtgactggcgggctgatcgggctggccac 29978421



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>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0541C02
          Length = 150660

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 288   aggatgatgcgccgggtgctccgcggggtcatcaccttcatcttcgccat 337
             |||||||||| | ||||  ||||||| |||||||||||||||||||||||
Sbjct: 53547 aggatgatgcacagggtcttccgcggcgtcatcaccttcatcttcgccat 53596



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 339   gctggcctgttcctgggagccgtcaccggcgggctcatcgggctggccac 388
             ||||| ||||| || ||||| || || |||||||| ||||||||||||||
Sbjct: 54520 gctggactgtttcttggagcggtgactggcgggctgatcgggctggccac 54569



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>dbj|AK111417.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G04, full
            insert sequence
          Length = 2166

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 339  gctggcctgttcctgggagccgtcaccggcgggctcatcgggctggccac 388
            ||||| ||||| || ||||| || || |||||||| ||||||||||||||
Sbjct: 2078 gctggactgtttcttggagcggtgactggcgggctgatcgggctggccac 2029



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>ref|XM_483676.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 783

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 361 tcaccggcgggctcatcgggctggc 385
           ||||||||||||| |||||||||||
Sbjct: 191 tcaccggcgggctgatcgggctggc 215



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 361      tcaccggcgggctcatcgggctggc 385
                ||||||||||||| |||||||||||
Sbjct: 27596243 tcaccggcgggctgatcgggctggc 27596219



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 37       cctcctcctcggatccctcgc 57
                |||||||||||||||||||||
Sbjct: 41713435 cctcctcctcggatccctcgc 41713415



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>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0466H10
          Length = 176530

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     cctcctcctcggatccctcgc 57
              |||||||||||||||||||||
Sbjct: 129037 cctcctcctcggatccctcgc 129017



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>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1479_B11
          Length = 105702

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 361   tcaccggcgggctcatcgggctggc 385
             ||||||||||||| |||||||||||
Sbjct: 78533 tcaccggcgggctgatcgggctggc 78509



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>dbj|AK105338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F06, full
           insert sequence
          Length = 1246

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 361 tcaccggcgggctcatcgggctggc 385
           ||||||||||||| |||||||||||
Sbjct: 344 tcaccggcgggctgatcgggctggc 368



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>dbj|AK067368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104L18, full
           insert sequence
          Length = 1321

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 37  cctcctcctcggatccctcgc 57
           |||||||||||||||||||||
Sbjct: 223 cctcctcctcggatccctcgc 243



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>ref|XM_463784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  gctccgccgaccggcctgct 90
           ||||||||||||||||||||
Sbjct: 178 gctccgccgaccggcctgct 159



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>ref|XM_366583.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG02659.4) partial mRNA
          Length = 441

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 20  cgtcctcgtcgattggccctcctc 43
           ||||||||||||| ||||||||||
Sbjct: 126 cgtcctcgtcgatgggccctcctc 149



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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    cttcgccatcgctggcctgt 348
              ||||||||||||||||||||
Sbjct: 614556 cttcgccatcgctggcctgt 614575



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gctccgccgaccggcctgct 90
              ||||||||||||||||||||
Sbjct: 114804 gctccgccgaccggcctgct 114785



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 358     ccgtcaccggcgggctcatcgggc 381
               |||||||||||||||| |||||||
Sbjct: 4953197 ccgtcaccggcgggctgatcgggc 4953174



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>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1370C05
          Length = 148271

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gctccgccgaccggcctgct 90
              ||||||||||||||||||||
Sbjct: 109413 gctccgccgaccggcctgct 109394



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>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1435_F07
          Length = 139041

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gctccgccgaccggcctgct 90
             ||||||||||||||||||||
Sbjct: 63831 gctccgccgaccggcctgct 63812



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>gb|AY850337.1| Magnaporthe grisea 60S ribosomal protein L14-A-like protein mRNA,
           complete cds
          Length = 1093

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 20  cgtcctcgtcgattggccctcctc 43
           ||||||||||||| ||||||||||
Sbjct: 248 cgtcctcgtcgatgggccctcctc 271


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,738,746
Number of Sequences: 3902068
Number of extensions: 1738746
Number of successful extensions: 34074
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33868
Number of HSP's gapped (non-prelim): 206
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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