ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast34a10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 186 bits (94), Expect = 4e-44 Identities = 115/122 (94%) Strand = Plus / Plus Query: 256 gcggagttcgaattcggcggccctggcgagcacatgatctccgccgacgagctcttccag 315 ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| Sbjct: 10664585 gcggagttcgagttcggcggccccggcgggcccatgatctccgccgacgagctcttccac 10664644 Query: 316 aacggccagatccggccgctcaccctgtccccgctcccggatctcgaccccgacagcgac 375 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct: 10664645 aacggccagatccggccgctcaccctgcccccgctcccggatctcgaccccggcagcgac 10664704 Query: 376 ga 377 || Sbjct: 10664705 ga 10664706 Score = 97.6 bits (49), Expect = 3e-17 Identities = 61/65 (93%) Strand = Plus / Plus Query: 46 gccatggacgacgacatcgacagcacctgctctacccctttcgccagcgcgccctccagc 105 ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||| Sbjct: 10664390 gccatggacgacgacatcgacagcagctgctccaccccattcgccagcgcgccgtccagc 10664449 Query: 106 cccgg 110 ||||| Sbjct: 10664450 cccgg 10664454 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 157 ttcagtgcaccggccagccccatccaccacctgctgttctcgtcctcgtcgg 208 ||||| || |||||||||||||||||||||||||| |||| ||||| |||| Sbjct: 10664486 ttcagcgcgccggccagccccatccaccacctgctcctctcctcctcctcgg 10664537 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Plus Query: 412 ggccgcgagcccacgttccggagcggctccgtgcaccgccgcgcccggtcgatgtc 467 |||||||||| ||| | |||||||| ||||||||||||||| | ||||| ||||| Sbjct: 10664750 ggccgcgagctgacgctgcggagcgggtccgtgcaccgccgcacgcggtccatgtc 10664805
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 186 bits (94), Expect = 4e-44 Identities = 115/122 (94%) Strand = Plus / Plus Query: 256 gcggagttcgaattcggcggccctggcgagcacatgatctccgccgacgagctcttccag 315 ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| Sbjct: 81499 gcggagttcgagttcggcggccccggcgggcccatgatctccgccgacgagctcttccac 81558 Query: 316 aacggccagatccggccgctcaccctgtccccgctcccggatctcgaccccgacagcgac 375 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct: 81559 aacggccagatccggccgctcaccctgcccccgctcccggatctcgaccccggcagcgac 81618 Query: 376 ga 377 || Sbjct: 81619 ga 81620 Score = 97.6 bits (49), Expect = 3e-17 Identities = 61/65 (93%) Strand = Plus / Plus Query: 46 gccatggacgacgacatcgacagcacctgctctacccctttcgccagcgcgccctccagc 105 ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||| Sbjct: 81304 gccatggacgacgacatcgacagcagctgctccaccccattcgccagcgcgccgtccagc 81363 Query: 106 cccgg 110 ||||| Sbjct: 81364 cccgg 81368 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 157 ttcagtgcaccggccagccccatccaccacctgctgttctcgtcctcgtcgg 208 ||||| || |||||||||||||||||||||||||| |||| ||||| |||| Sbjct: 81400 ttcagcgcgccggccagccccatccaccacctgctcctctcctcctcctcgg 81451 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Plus Query: 412 ggccgcgagcccacgttccggagcggctccgtgcaccgccgcgcccggtcgatgtc 467 |||||||||| ||| | |||||||| ||||||||||||||| | ||||| ||||| Sbjct: 81664 ggccgcgagctgacgctgcggagcgggtccgtgcaccgccgcacgcggtccatgtc 81719
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 186 bits (94), Expect = 4e-44 Identities = 115/122 (94%) Strand = Plus / Plus Query: 256 gcggagttcgaattcggcggccctggcgagcacatgatctccgccgacgagctcttccag 315 ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| Sbjct: 10662686 gcggagttcgagttcggcggccccggcgggcccatgatctccgccgacgagctcttccac 10662745 Query: 316 aacggccagatccggccgctcaccctgtccccgctcccggatctcgaccccgacagcgac 375 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct: 10662746 aacggccagatccggccgctcaccctgcccccgctcccggatctcgaccccggcagcgac 10662805 Query: 376 ga 377 || Sbjct: 10662806 ga 10662807 Score = 97.6 bits (49), Expect = 3e-17 Identities = 61/65 (93%) Strand = Plus / Plus Query: 46 gccatggacgacgacatcgacagcacctgctctacccctttcgccagcgcgccctccagc 105 ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||| Sbjct: 10662491 gccatggacgacgacatcgacagcagctgctccaccccattcgccagcgcgccgtccagc 10662550 Query: 106 cccgg 110 ||||| Sbjct: 10662551 cccgg 10662555 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 157 ttcagtgcaccggccagccccatccaccacctgctgttctcgtcctcgtcgg 208 ||||| || |||||||||||||||||||||||||| |||| ||||| |||| Sbjct: 10662587 ttcagcgcgccggccagccccatccaccacctgctcctctcctcctcctcgg 10662638 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Plus Query: 412 ggccgcgagcccacgttccggagcggctccgtgcaccgccgcgcccggtcgatgtc 467 |||||||||| ||| | |||||||| ||||||||||||||| | ||||| ||||| Sbjct: 10662851 ggccgcgagctgacgctgcggagcgggtccgtgcaccgccgcacgcggtccatgtc 10662906
>dbj|AK071041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F02, full insert sequence Length = 1575 Score = 186 bits (94), Expect = 4e-44 Identities = 115/122 (94%) Strand = Plus / Plus Query: 256 gcggagttcgaattcggcggccctggcgagcacatgatctccgccgacgagctcttccag 315 ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| Sbjct: 269 gcggagttcgagttcggcggccccggcgggcccatgatctccgccgacgagctcttccac 328 Query: 316 aacggccagatccggccgctcaccctgtccccgctcccggatctcgaccccgacagcgac 375 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct: 329 aacggccagatccggccgctcaccctgcccccgctcccggatctcgaccccggcagcgac 388 Query: 376 ga 377 || Sbjct: 389 ga 390 Score = 97.6 bits (49), Expect = 3e-17 Identities = 61/65 (93%) Strand = Plus / Plus Query: 46 gccatggacgacgacatcgacagcacctgctctacccctttcgccagcgcgccctccagc 105 ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||| Sbjct: 74 gccatggacgacgacatcgacagcagctgctccaccccattcgccagcgcgccgtccagc 133 Query: 106 cccgg 110 ||||| Sbjct: 134 cccgg 138 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 157 ttcagtgcaccggccagccccatccaccacctgctgttctcgtcctcgtcgg 208 ||||| || |||||||||||||||||||||||||| |||| ||||| |||| Sbjct: 170 ttcagcgcgccggccagccccatccaccacctgctcctctcctcctcctcgg 221 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Plus Query: 412 ggccgcgagcccacgttccggagcggctccgtgcaccgccgcgcccggtcgatgtc 467 |||||||||| ||| | |||||||| ||||||||||||||| | ||||| ||||| Sbjct: 434 ggccgcgagctgacgctgcggagcgggtccgtgcaccgccgcacgcggtccatgtc 489
>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence Length = 146836 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 303 cgagctcttccagaacggccagatccggccgctcaccctgtccccgctcccggatctcga 362 |||||||| ||| ||||||||||||| ||||| ||| ||||||||| |||| ||||||| Sbjct: 79979 cgagctctaccacaacggccagatccagccgcgaaccttgtccccgcccccgaatctcga 79920 Query: 363 ccccgacagcgacgaagatgac 384 ||| |||||||| || |||||| Sbjct: 79919 ccctgacagcgatgacgatgac 79898
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 303 cgagctcttccagaacggccagatccggccgctcaccctgtccccgctcccggatctcga 362 |||||||| ||| ||||||||||||| ||||| ||| ||||||||| |||| ||||||| Sbjct: 2753203 cgagctctaccacaacggccagatccagccgcgaaccttgtccccgcccccgaatctcga 2753144 Query: 363 ccccgacagcgacgaagatgac 384 ||| |||||||| || |||||| Sbjct: 2753143 ccctgacagcgatgacgatgac 2753122
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 303 cgagctcttccagaacggccagatccggccgctcaccctgtccccgctcccggatctcga 362 |||||||| ||| ||||||||||||| ||||| ||| ||||||||| |||| ||||||| Sbjct: 2753154 cgagctctaccacaacggccagatccagccgcgaaccttgtccccgcccccgaatctcga 2753095 Query: 363 ccccgacagcgacgaagatgac 384 ||| |||||||| || |||||| Sbjct: 2753094 ccctgacagcgatgacgatgac 2753073
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 294 ctccgccgacgagctcttccagaacggccagatccg 329 ||||||||||||||||||||| |||||||||||||| Sbjct: 22704931 ctccgccgacgagctcttccacaacggccagatccg 22704966
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 294 ctccgccgacgagctcttccagaacggccagatccg 329 ||||||||||||||||||||| |||||||||||||| Sbjct: 22633122 ctccgccgacgagctcttccacaacggccagatccg 22633157
>emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb0092G12 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131603 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 294 ctccgccgacgagctcttccagaacggccagatccg 329 ||||||||||||||||||||| |||||||||||||| Sbjct: 16781 ctccgccgacgagctcttccacaacggccagatccg 16816
>gb|AC115697.19| Mus musculus chromosome 7, clone RP24-233E11, complete sequence Length = 161690 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 gccccgcgcgcggccgcgagcc 422 |||||||||||||||||||||| Sbjct: 80714 gccccgcgcgcggccgcgagcc 80693
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0004D06, complete sequence Length = 157547 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gagctcttccagaacggccagatccg 329 ||||||||||| |||||||||||||| Sbjct: 29601 gagctcttccacaacggccagatccg 29626
>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0076M06, complete sequence Length = 133581 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gagctcttccagaacggccagatccg 329 ||||||||||| |||||||||||||| Sbjct: 129418 gagctcttccacaacggccagatccg 129443
>ref|XM_967266.1| PREDICTED: Tribolium castaneum similar to CG11614-PA (LOC661080), mRNA Length = 1749 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 89 ccagcgcgccctccagccccgg 110 |||||||||||||||||||||| Sbjct: 1637 ccagcgcgccctccagccccgg 1658
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gagctcttccagaacggccagatccg 329 ||||||||||| |||||||||||||| Sbjct: 26327769 gagctcttccacaacggccagatccg 26327794
>dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H07, full insert sequence Length = 2386 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 304 gagctcttccagaacggccagatccg 329 ||||||||||| |||||||||||||| Sbjct: 1832 gagctcttccacaacggccagatccg 1807
>dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A05, full insert sequence Length = 1300 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gagctcttccagaacggccagatccg 329 ||||||||||| |||||||||||||| Sbjct: 325 gagctcttccacaacggccagatccg 350
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gagctcttccagaacggccagatccg 329 ||||||||||| |||||||||||||| Sbjct: 26642027 gagctcttccacaacggccagatccg 26642052
>ref|XM_954518.1| Neurospora crassa OR74A hypothetical protein (NCU06021.1) partial mRNA Length = 1266 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 ctgctgttctcgtcctcgtcg 207 ||||||||||||||||||||| Sbjct: 164 ctgctgttctcgtcctcgtcg 144
>ref|XM_325875.1| Neurospora crassa OR74A hypothetical protein (NCU06021.1) partial mRNA Length = 1266 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 ctgctgttctcgtcctcgtcg 207 ||||||||||||||||||||| Sbjct: 164 ctgctgttctcgtcctcgtcg 144
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 gccatggacgacgacatcgacagca 70 |||||||||||| |||||||||||| Sbjct: 18349017 gccatggacgacaacatcgacagca 18349041
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 399 cggccccgcgcgcggccgcgagccc 423 ||||| ||||||||||||||||||| Sbjct: 172758 cggccgcgcgcgcggccgcgagccc 172734
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 gccatggacgacgacatcgacagca 70 |||||||||||| |||||||||||| Sbjct: 50940 gccatggacgacaacatcgacagca 50964
>gb|AC092266.4| Homo sapiens chromosome 5 clone RP11-24P24, complete sequence Length = 171601 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 gccagccccatccaccacctgctgt 193 ||||||||||||||||||| ||||| Sbjct: 115024 gccagccccatccaccaccagctgt 115000
>ref|NM_189842.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1467 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| || |||| |||||||||||| Sbjct: 451 ccgccgacgagctcttcgagggcggcaggatccggccgct 490
>ref|XM_506476.1| PREDICTED Oryza sativa (japonica cultivar-group), P0560B08.115 mRNA Length = 1544 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| || |||| |||||||||||| Sbjct: 568 ccgccgacgagctcttcgagggcggcaggatccggccgct 607
>ref|XM_957954.1| Neurospora crassa OR74A hypothetical protein (NCU05685.1) partial mRNA Length = 1695 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 326 tccggccgctcaccctgtccccgctccc 353 |||||||||||| |||||||||| |||| Sbjct: 1227 tccggccgctcagcctgtccccgttccc 1254
>ref|XM_325539.1| Neurospora crassa OR74A hypothetical protein (NCU05685.1) partial mRNA Length = 1695 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 326 tccggccgctcaccctgtccccgctccc 353 |||||||||||| |||||||||| |||| Sbjct: 1227 tccggccgctcagcctgtccccgttccc 1254
>emb|CR683398.2|CNS0FQ9E Tetraodon nigroviridis full-length cDNA Length = 1254 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ccggagcggctccgtgcacc 448 |||||||||||||||||||| Sbjct: 1099 ccggagcggctccgtgcacc 1080
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 cagcgaacggcgccacggccccgc 407 ||||||||||||||| |||||||| Sbjct: 587141 cagcgaacggcgccatggccccgc 587118
>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the 3' end of the COL4A2 gene for collagen type IV alpha 2, the RAB20 gene for a RAS oncogene family member, a novel gene (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel gene (FLJ12118) and three CpG islands, complete sequence Length = 177392 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 acggcgccacggccccgcgcgcgg 413 |||||||| ||||||||||||||| Sbjct: 129389 acggcgccccggccccgcgcgcgg 129366
>dbj|AK095260.1| Homo sapiens cDNA FLJ37941 fis, clone CTONG2008269 Length = 2458 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 acggcgccacggccccgcgcgcgg 413 |||||||| ||||||||||||||| Sbjct: 496 acggcgccccggccccgcgcgcgg 519
>gb|AF327876.1|AF327876 Chlamydomonas reinhardtii PF6 protein gene, promoter and complete cds Length = 11462 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 gcgccacggccccgcgcgcggccg 416 |||||||||| ||||||||||||| Sbjct: 6732 gcgccacggcgccgcgcgcggccg 6709
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cctcgtcggctgctgctggt 219 |||||||||||||||||||| Sbjct: 3453243 cctcgtcggctgctgctggt 3453262
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| || |||| |||||||||||| Sbjct: 25538214 ccgccgacgagctcttcgagggcggcaggatccggccgct 25538253
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| |||| || | ||||||||||| Sbjct: 5859718 ccgccgacgagctcttcgagaagggtaaaatccggccgct 5859757 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gaagatgacagcgaacggcg 395 |||||||||||||||||||| Sbjct: 92769 gaagatgacagcgaacggcg 92750
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ttccagaacggccagatccg 329 |||||||||||||||||||| Sbjct: 5664116 ttccagaacggccagatccg 5664097
>gb|AF147973.1|AF147973 Membranipora membranacea isolate IS2 cytochrome oxidase I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 601 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tcaccctgtccccgctcccg 354 |||||||||||||||||||| Sbjct: 309 tcaccctgtccccgctcccg 290
>gb|AF147970.1|AF147970 Membranipora membranacea isolate CU6 cytochrome oxidase I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 601 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tcaccctgtccccgctcccg 354 |||||||||||||||||||| Sbjct: 309 tcaccctgtccccgctcccg 290
>gb|AF147966.1|AF147966 Membranipora membranacea isolate CU2 cytochrome oxidase I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 601 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tcaccctgtccccgctcccg 354 |||||||||||||||||||| Sbjct: 309 tcaccctgtccccgctcccg 290
>gb|AF147961.1|AF147961 Membranipora membranacea isolate CS3 cytochrome oxidase I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 601 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tcaccctgtccccgctcccg 354 |||||||||||||||||||| Sbjct: 309 tcaccctgtccccgctcccg 290
>gb|AF147959.1|AF147959 Membranipora membranacea isolate CS1 cytochrome oxidase I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 601 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tcaccctgtccccgctcccg 354 |||||||||||||||||||| Sbjct: 309 tcaccctgtccccgctcccg 290
>dbj|AP006751.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1460A05 Length = 143371 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gaagatgacagcgaacggcg 395 |||||||||||||||||||| Sbjct: 92769 gaagatgacagcgaacggcg 92750
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| |||| || | ||||||||||| Sbjct: 175247 ccgccgacgagctcttcgagaagggtaaaatccggccgct 175286
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| |||| || | ||||||||||| Sbjct: 60493 ccgccgacgagctcttcgagaagggtaaaatccggccgct 60532
>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0560B08 Length = 128098 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| || |||| |||||||||||| Sbjct: 75484 ccgccgacgagctcttcgagggcggcaggatccggccgct 75523
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cctcgtcggctgctgctggt 219 |||||||||||||||||||| Sbjct: 86662 cctcgtcggctgctgctggt 86681
>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0672D01 Length = 146954 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cctcgtcggctgctgctggt 219 |||||||||||||||||||| Sbjct: 8960 cctcgtcggctgctgctggt 8979
>dbj|AK107576.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D09, full insert sequence Length = 1467 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| || |||| |||||||||||| Sbjct: 451 ccgccgacgagctcttcgagggcggcaggatccggccgct 490
>dbj|AK072031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104E22, full insert sequence Length = 1545 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| || |||| |||||||||||| Sbjct: 568 ccgccgacgagctcttcgagggcggcaggatccggccgct 607
>dbj|AK070686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062N20, full insert sequence Length = 1595 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 296 ccgccgacgagctcttccagaacggccagatccggccgct 335 ||||||||||||||||| |||| || | ||||||||||| Sbjct: 675 ccgccgacgagctcttcgagaagggtaaaatccggccgct 636
>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0681G01, complete sequence Length = 184118 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 gaagatgacagcgaacggcg 395 |||||||||||||||||||| Sbjct: 127773 gaagatgacagcgaacggcg 127792 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,794,804 Number of Sequences: 3902068 Number of extensions: 2794804 Number of successful extensions: 68249 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67171 Number of HSP's gapped (non-prelim): 1078 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
