ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast34a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 pre... 70 9e-13
2FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 66 2e-11
3FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 61 6e-10
4RADA_PICTO (Q6L126) DNA repair and recombination protein radA 28 7.0
5CNX1_ARATH (Q39054) Molybdopterin biosynthesis CNX1 protein (Mol... 27 9.2

>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor|
          Length = 424

 Score = 70.5 bits (171), Expect = 9e-13
 Identities = 31/66 (46%), Positives = 47/66 (71%)
 Frame = +1

Query: 181 YNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIRH 360
           +N+T++L  +P +S F+  LTQT LA +IN+RRTITV  V N+ M +L   G TL T+++
Sbjct: 25  HNVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYTLSTLKN 84

Query: 361 MLQIHV 378
           +L +HV
Sbjct: 85  ILSLHV 90



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>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 35/67 (52%), Positives = 46/67 (68%)
 Frame = +1

Query: 178 GYNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIR 357
           G+NIT+IL + PEYS FN  L+QT+LA +IN R TITVLV+ N  M SLA G   L  ++
Sbjct: 25  GHNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLA-GKHPLSVVK 83

Query: 358 HMLQIHV 378
           + L + V
Sbjct: 84  NALSLLV 90



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>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 29/50 (58%), Positives = 38/50 (76%)
 Frame = +1

Query: 181 YNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAG 330
           +NIT+IL + P+YS FN  L+QT+LA +IN R TITVLV+ N  M +LAG
Sbjct: 26  HNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALAG 75



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>RADA_PICTO (Q6L126) DNA repair and recombination protein radA|
          Length = 323

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 193 KILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTI 354
           KI+    +Y+      T   +   +NKR+ I  L   +S++ +L GGG   Q+I
Sbjct: 59  KIINAARKYADVGNFETGEEI---LNKRKEIKKLTTGSSNLDNLLGGGLETQSI 109



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>CNX1_ARATH (Q39054) Molybdopterin biosynthesis CNX1 protein (Molybdenum|
           cofactor biosynthesis enzyme CNX1)
          Length = 670

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
 Frame = +1

Query: 190 TKILGEYPEYSQFNKLLTQTRLAQDINK-----RRTITVLV----VANSDMGSLAGGGRT 342
           TK++G+    S+  K+L QT+   DI +      +  TVL     +  S++G LA  G T
Sbjct: 124 TKVIGDVSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIGLLATAGVT 183

Query: 343 LQTIRHM 363
           +  +  M
Sbjct: 184 MVKVYPM 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,944,728
Number of Sequences: 219361
Number of extensions: 264737
Number of successful extensions: 1134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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