ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast33e09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185082.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1441 Score = 83.8 bits (42), Expect = 4e-13 Identities = 96/114 (84%) Strand = Plus / Plus Query: 237 gaggaaggcatgacctacaagggcgccggcgtggacatcgacgccggcaccgagctggtg 296 ||||| || ||||| |||||||||||||||||||| ||||||||||| || ||||| || Sbjct: 209 gaggaggggatgacgtacaagggcgccggcgtggatatcgacgccgggacggagctcgtc 268 Query: 297 cgccgcatccgcaagctggccctcgggattggcggcttcggcggcctctacccc 350 ||||||||| ||| | |||| | | ||| ||||||||||| ||||||| |||| Sbjct: 269 cgccgcatcggcaggttggctccagcgataggcggcttcggtggcctcttcccc 322 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 71 cgccgaccgcctcctccacctcgtccgcgc 100 |||||||||||||||||||||| ||||||| Sbjct: 13 cgccgaccgcctcctccacctcctccgcgc 42
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 4e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 237 gaggaaggcatgacctacaagggcgccggcgtggacatcgacgccggcaccgagctggtg 296 ||||| || ||||| |||||||||||||||||||| ||||||||||| || ||||| || Sbjct: 34622538 gaggaggggatgacgtacaagggcgccggcgtggatatcgacgccgggacggagctcgtc 34622479 Query: 297 cgccgcatccgcaagctggccctcgggattggcggcttcggcggcctctacccc 350 ||||||||| ||| | |||| | | ||| ||||||||||| ||||||| |||| Sbjct: 34622478 cgccgcatcggcaggttggctccagcgataggcggcttcggtggcctcttcccc 34622425 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 71 cgccgaccgcctcctccacctcgtccgcgc 100 |||||||||||||||||||||| ||||||| Sbjct: 34622734 cgccgaccgcctcctccacctcctccgcgc 34622705
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 83.8 bits (42), Expect = 4e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 237 gaggaaggcatgacctacaagggcgccggcgtggacatcgacgccggcaccgagctggtg 296 ||||| || ||||| |||||||||||||||||||| ||||||||||| || ||||| || Sbjct: 80255 gaggaggggatgacgtacaagggcgccggcgtggatatcgacgccgggacggagctcgtc 80196 Query: 297 cgccgcatccgcaagctggccctcgggattggcggcttcggcggcctctacccc 350 ||||||||| ||| | |||| | | ||| ||||||||||| ||||||| |||| Sbjct: 80195 cgccgcatcggcaggttggctccagcgataggcggcttcggtggcctcttcccc 80142 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 71 cgccgaccgcctcctccacctcgtccgcgc 100 |||||||||||||||||||||| ||||||| Sbjct: 80451 cgccgaccgcctcctccacctcctccgcgc 80422
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 4e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 237 gaggaaggcatgacctacaagggcgccggcgtggacatcgacgccggcaccgagctggtg 296 ||||| || ||||| |||||||||||||||||||| ||||||||||| || ||||| || Sbjct: 34712610 gaggaggggatgacgtacaagggcgccggcgtggatatcgacgccgggacggagctcgtc 34712551 Query: 297 cgccgcatccgcaagctggccctcgggattggcggcttcggcggcctctacccc 350 ||||||||| ||| | |||| | | ||| ||||||||||| ||||||| |||| Sbjct: 34712550 cgccgcatcggcaggttggctccagcgataggcggcttcggtggcctcttcccc 34712497 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 71 cgccgaccgcctcctccacctcgtccgcgc 100 |||||||||||||||||||||| ||||||| Sbjct: 34712806 cgccgaccgcctcctccacctcctccgcgc 34712777
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence Length = 129302 Score = 83.8 bits (42), Expect = 4e-13 Identities = 96/114 (84%) Strand = Plus / Plus Query: 237 gaggaaggcatgacctacaagggcgccggcgtggacatcgacgccggcaccgagctggtg 296 ||||| || ||||| |||||||||||||||||||| ||||||||||| || ||||| || Sbjct: 20795 gaggaggggatgacgtacaagggcgccggcgtggatatcgacgccgggacggagctcgtc 20854 Query: 297 cgccgcatccgcaagctggccctcgggattggcggcttcggcggcctctacccc 350 ||||||||| ||| | |||| | | ||| ||||||||||| ||||||| |||| Sbjct: 20855 cgccgcatcggcaggttggctccagcgataggcggcttcggtggcctcttcccc 20908 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 71 cgccgaccgcctcctccacctcgtccgcgc 100 |||||||||||||||||||||| ||||||| Sbjct: 20599 cgccgaccgcctcctccacctcctccgcgc 20628
>dbj|AK101211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031B01, full insert sequence Length = 1460 Score = 83.8 bits (42), Expect = 4e-13 Identities = 96/114 (84%) Strand = Plus / Plus Query: 237 gaggaaggcatgacctacaagggcgccggcgtggacatcgacgccggcaccgagctggtg 296 ||||| || ||||| |||||||||||||||||||| ||||||||||| || ||||| || Sbjct: 251 gaggaggggatgacgtacaagggcgccggcgtggatatcgacgccgggacggagctcgtc 310 Query: 297 cgccgcatccgcaagctggccctcgggattggcggcttcggcggcctctacccc 350 ||||||||| ||| | |||| | | ||| ||||||||||| ||||||| |||| Sbjct: 311 cgccgcatcggcaggttggctccagcgataggcggcttcggtggcctcttcccc 364 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 71 cgccgaccgcctcctccacctcgtccgcgc 100 |||||||||||||||||||||| ||||||| Sbjct: 55 cgccgaccgcctcctccacctcctccgcgc 84
>gb|AY616093.1| Prototheca wickerhamii plastid phosphoribosylformylglycinamidine cyclo-ligase-like mRNA, partial sequence Length = 660 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 251 ctacaagggcgccggcgtggacatcgacgccggcaccgagctggtgcgccgcatcc 306 |||||||| |||||| |||||||||||||| || | ||||||||||||||||||| Sbjct: 209 ctacaaggacgccggtgtggacatcgacgctgggaatgagctggtgcgccgcatcc 264
>gb|AE010413.1| Methanopyrus kandleri AV19 section 112 of 157 of the complete genome Length = 13447 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 246 atgacctacaagggcgccggcgtggacatcgac 278 ||||||||||||| |||||| |||||||||||| Sbjct: 5816 atgacctacaaggacgccggagtggacatcgac 5784
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 46.1 bits (23), Expect = 0.084 Identities = 32/35 (91%) Strand = Plus / Plus Query: 251 ctacaagggcgccggcgtggacatcgacgccggca 285 |||||||| || |||||||||||||||||||||| Sbjct: 2381886 ctacaaggatgctggcgtggacatcgacgccggca 2381920
>gb|AC168276.3| Mus musculus BAC RP24-485I12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186675 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 39 cccacccccattcctccaccccaccc 64 |||||||||||| ||||||||||||| Sbjct: 46208 cccacccccattgctccaccccaccc 46233
>gb|AY659104.1| Synthetic construct Peudomonas aeruginosa clone FLH037484.01F PA0945 gene, partial cds Length = 1062 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Plus Query: 251 ctacaagggcgccggcgtggacatcgacgccggc 284 |||||||| ||| || |||||||||||||||||| Sbjct: 27 ctacaaggacgctggtgtggacatcgacgccggc 60
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ggcgccgaccgcctcctccacc 90 |||||||||||||||||||||| Sbjct: 193327 ggcgccgaccgcctcctccacc 193306
>gb|AE011714.1| Xanthomonas axonopodis pv. citri str. 306, section 92 of 469 of the complete genome Length = 11283 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 254 caagggcgccggcgtggacatcgacg 279 ||||| |||||||||||||||||||| Sbjct: 11045 caaggccgccggcgtggacatcgacg 11020
>gb|AE011642.1| Xanthomonas axonopodis pv. citri str. 306, section 20 of 469 of the complete genome Length = 10641 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 cggcaccgagctggtgcgccgcatcc 306 |||||||||||||| ||||||||||| Sbjct: 3204 cggcaccgagctggcgcgccgcatcc 3229
>gb|AC153892.12| Mus musculus 10 BAC RP23-113O12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197426 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 39 cccacccccattcctccaccccaccc 64 |||||||||||| ||||||||||||| Sbjct: 194308 cccacccccattgctccaccccaccc 194333
>gb|AE004528.1| Pseudomonas aeruginosa PAO1, section 89 of 529 of the complete genome Length = 10980 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Minus Query: 251 ctacaagggcgccggcgtggacatcgacgccggc 284 |||||||| ||| || |||||||||||||||||| Sbjct: 10818 ctacaaggacgctggtgtggacatcgacgccggc 10785
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Minus Query: 251 ctacaagggcgccggcgtggacatcgacgccggc 284 |||||||| |||||| || ||||||||||||||| Sbjct: 1432080 ctacaaggacgccggtgtagacatcgacgccggc 1432047 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ggattggcggcttcggcggc 341 |||||||||||||||||||| Sbjct: 1120689 ggattggcggcttcggcggc 1120670
>gb|AY110302.1| Zea mays CL35256_1 mRNA sequence Length = 1161 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 320 cgggattggcggcttcggcggcctct 345 ||||||||||||||||||||| |||| Sbjct: 1154 cgggattggcggcttcggcggtctct 1129
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Minus Query: 251 ctacaagggcgccggcgtggacatcgacgccggc 284 |||||||| |||||| || ||||||||||||||| Sbjct: 1861967 ctacaaggacgccggtgtagacatcgacgccggc 1861934
>ref|NM_194862.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0031A07.10), mRNA Length = 345 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 cgccgaccgcctcctccacct 91 ||||||||||||||||||||| Sbjct: 268 cgccgaccgcctcctccacct 248
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 cgcgcgccggcggccgcccct 116 ||||||||||||||||||||| Sbjct: 49198 cgcgcgccggcggccgcccct 49178
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 251 ctacaagggcgccggcgtggacatcgacgccgg 283 |||||||| |||||| || |||||||||||||| Sbjct: 1824860 ctacaaggacgccggtgtagacatcgacgccgg 1824828
>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24, complete sequence Length = 136104 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 gccggcggccgcccctgcctg 121 ||||||||||||||||||||| Sbjct: 129184 gccggcggccgcccctgcctg 129204
>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20, complete sequence Length = 130827 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 gccggcggccgcccctgcctg 121 ||||||||||||||||||||| Sbjct: 21555 gccggcggccgcccctgcctg 21575
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 cgccggcgtggacatcgacgc 280 ||||||||||||||||||||| Sbjct: 591890 cgccggcgtggacatcgacgc 591910
>gb|AC005831.1| Homo sapiens 12p13.3 PAC RPCI5-1180D12 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 144515 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 cccacccccattcctccaccc 59 ||||||||||||||||||||| Sbjct: 131485 cccacccccattcctccaccc 131465
>gb|AC084884.2| Oryza sativa chromosome 10 clone OSJNBa0031A07, complete sequence Length = 134553 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 cgccgaccgcctcctccacct 91 ||||||||||||||||||||| Sbjct: 63135 cgccgaccgcctcctccacct 63115
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 gccggcggccgcccctgcctg 121 ||||||||||||||||||||| Sbjct: 97864 gccggcggccgcccctgcctg 97884
>gb|AC091022.4| Homo sapiens chromosome 8, clone RP11-65A5, complete sequence Length = 155949 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 accttttgcccacccccattcctcc 55 |||| |||||||||||||||||||| Sbjct: 42168 acctcttgcccacccccattcctcc 42144
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 cgcgcgccggcggccgcccct 116 ||||||||||||||||||||| Sbjct: 96702 cgcgcgccggcggccgcccct 96722
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 gccggcggccgcccctgcctg 121 ||||||||||||||||||||| Sbjct: 7341614 gccggcggccgcccctgcctg 7341594
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 cgccgaccgcctcctccacct 91 ||||||||||||||||||||| Sbjct: 2974713 cgccgaccgcctcctccacct 2974693
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 cgcgcgccggcggccgcccct 116 ||||||||||||||||||||| Sbjct: 2770872 cgcgcgccggcggccgcccct 2770852
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 cggcaccgagctggtgcgccgcatccgca 309 |||| |||||||||||||||| ||||||| Sbjct: 4839140 cggcgccgagctggtgcgccggatccgca 4839112 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgcgcgccggcggccgcccc 115 |||||||||||||||||||| Sbjct: 2805813 cgcgcgccggcggccgcccc 2805794
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 cgccgaccgcctcctccacct 91 ||||||||||||||||||||| Sbjct: 2974634 cgccgaccgcctcctccacct 2974614
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 gccggcggccgcccctgcctg 121 ||||||||||||||||||||| Sbjct: 7411700 gccggcggccgcccctgcctg 7411680
>gb|AC127581.4| Mus musculus BAC clone RP24-88B13 from 9, complete sequence Length = 204684 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccacccccattcctccacccc 60 ||||||||||||||||||||| Sbjct: 96765 ccacccccattcctccacccc 96745
>gb|AC139108.3| Mus musculus BAC clone RP23-93M1 from 9, complete sequence Length = 269739 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccacccccattcctccacccc 60 ||||||||||||||||||||| Sbjct: 225192 ccacccccattcctccacccc 225172
>ref|XM_550178.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1815 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 accgcctcctccacctcgtc 95 |||||||||||||||||||| Sbjct: 109 accgcctcctccacctcgtc 128
>gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence Length = 1108 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 ccgaccgcctcctccacctcgtcc 96 |||||| ||||||||||||||||| Sbjct: 748 ccgacctcctcctccacctcgtcc 771
>gb|AC108334.10| Rattus norvegicus 4 BAC CH230-151B7 (Children's Hospital Oakland Research Institute) complete sequence Length = 187811 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttgcccacccccattcctcc 55 |||||||||||||||||||| Sbjct: 87523 ttgcccacccccattcctcc 87542
>gb|AC102231.12| Mus musculus chromosome 18, clone RP24-76A21, complete sequence Length = 174136 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 ccattcctccaccccacccc 65 |||||||||||||||||||| Sbjct: 59247 ccattcctccaccccacccc 59266
>gb|AC091473.2| Mus musculus chromosome X clones RP21-114F21, RP21-430D6 complete sequence Length = 221860 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 204033 cctccggctccggccccgcc 204014
>ref|XM_959112.1| Neurospora crassa OR74A hypothetical protein (NCU03279.1) partial mRNA Length = 2274 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ccgaccgcctcctccacctc 92 |||||||||||||||||||| Sbjct: 2002 ccgaccgcctcctccacctc 2021
>ref|XM_330714.1| Neurospora crassa OR74A hypothetical protein (NCU03279.1) partial mRNA Length = 2274 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ccgaccgcctcctccacctc 92 |||||||||||||||||||| Sbjct: 2002 ccgaccgcctcctccacctc 2021
>gb|AE007313.1| Sinorhizobium meliloti 1021 plasmid pSymA section 119 of 121 of the complete plasmid sequence Length = 12514 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cccatgggcgccgaccgcctcctc 86 |||||||||| ||||||||||||| Sbjct: 7175 cccatgggcggcgaccgcctcctc 7198
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggcgccggcgtggacatcga 277 |||||||||||||||||||| Sbjct: 1657074 ggcgccggcgtggacatcga 1657093
>ref|XM_816749.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511277.410) partial mRNA Length = 2448 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 gccggcgtggacatcgacgccggc 284 ||||||||||||| |||||||||| Sbjct: 419 gccggcgtggacaacgacgccggc 396
>gb|AC111718.10| Rattus norvegicus x BAC CH230-60P10 (Children's Hospital Oakland Research Institute) complete sequence Length = 157071 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cccctgcctgtcctctccgc 131 |||||||||||||||||||| Sbjct: 45234 cccctgcctgtcctctccgc 45215
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggcgccggcgtggacatcga 277 |||||||||||||||||||| Sbjct: 86948 ggcgccggcgtggacatcga 86967
>emb|BX248309.8| Human DNA sequence from clone DASS-241N2 on chromosome 6, complete sequence Length = 29588 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 27939 cccccattcctccacccctcccca 27916
>emb|AL844527.6| Human DNA sequence from clone DAQB-314F24 on chromosome 6 Contains the 5' end of the COL11A2 gene for collagen type XI alpha 2, the RXRB gene for retinoid X receptor, beta, the SLC39A7 gene for solute carrier family 39 (zinc transporter), member 7, the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8, the RING1 gene for ring finger protein 1, the ZNF314P pseudogene for zinc finger protein 314, the HTATSF1P pseudogene for HIV TAT specific factor 1, the HCG25 gene for HLA complex group 25, the VPS52 gene for vacuolar protein sorting 52 (yeast), the RPS18 gene for ribosomal protein S18, the B3GALT4 gene for UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4, the 3'end of the C6orf11 gene for chromosome 6 open reading frame 11, and 7 CpG islands, complete sequence Length = 109523 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 18671 cccccattcctccacccctcccca 18648
>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the HLA-DPA1 gene for major histocompatibility complex, class II, DP alpha 1, the HLA-DPB1 gene for major histocompatibility complex, class II, DP beta 1, a ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, a pseudogene similar to part of collagens, a novel protein similar to major histocompatibility complex, class II, DP beta 2 (pseudogene), a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the 5' end of the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG islands, complete sequence Length = 187964 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 171836 cccccattcctccacccctcccca 171813
>emb|AL645940.4| Human DNA sequence from clone XXbac-157A10 on chromosome 6 contains the 3' end of the gene for a novel protein similar to major histocompatibility complex, class II, DP beta 2 pseudogene, a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the FABGL gene for hydroxysteroid (17-beta) dehydrogenase 8, the RING1 gene for ring finger protein 1, a zinger finger protein pseudogene, a HIV TAT specific factor 1 (HTATSF1) pseudogene, a novel transcript, the SACM2L gene for SAC2 suppressor of actin mutations 2-like (yeast), the 5' end of the RPS18 gene for ribosomal protein S18 and six CpG islands, complete sequence Length = 158033 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 75252 cccccattcctccacccctcccca 75229
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tggacatcgacgccggcacc 287 |||||||||||||||||||| Sbjct: 1379892 tggacatcgacgccggcacc 1379911
>emb|AL031228.1|HS1033B10 Human DNA sequence from clone RP5-1033B10 on chromosome 6p21.2-21.31 Contains the 3' end of the C6ORF11 gene for chromosome 6 open reading frame 11 (BING4), the B3GALT4 gene for UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase polypeptide 4 (GalT4,Gal-T2,beta3GALT4,beta3Gal-T4), the RPS18 gene for 40S ribosomal protein S18 (KE3,HKE3,KE-3), the SACM2L gene for SAC2 suppressor of actin mutations 2-like (yeast)(ARE1,SAC2,ARE-1,RP5-1033B10), a pseudogene similar to part of HTATSF1 (HIV TAT specific factor 1), the RING1 gene for ring finger protein 1 (RNF1), the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 (KE6,FABG,HKE6,FABGL,RING2,H2-KE6,D6S2245E), the HKE4 gene for HLA class II region protein KE4 (KE4,RING5,H2-KE4,D6S115E,D6S2244E), the RXRB gene for retinoid X receptor beta (NR2B2,RCoR-1,H-2RIIBP), the COL11A2 gene for collagen type XI alpha 2 (HKE5,PARP,STL3,DFNA13), an HLA class II histocompatability antigen D or S beta pseudogene,the gene for a novel protein similar to major histocompatibility complex class II DP beta 1 precursor, three novel genes and seven CpG islands, complete sequence Length = 175737 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 96013 cccccattcctccacccctcccca 96036
>emb|AL020991.1|HS884M20 Human DNA sequence from clone RP5-884M20 on chromosome Xp11.21 Contains the ALAS2 gene for aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia), the APEX2 gene for APEX nuclease (apurinic/apyrimidinic endonuclease) 2, the 5' end of the PFKFB1 gene for 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 and a CpG island, complete sequence Length = 114173 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cccccattcctccaccccac 62 |||||||||||||||||||| Sbjct: 108407 cccccattcctccaccccac 108426
>emb|BX032230.1|CNS08X16 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA48AB03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 668 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gccgcatccgcaagctggcc 317 |||||||||||||||||||| Sbjct: 103 gccgcatccgcaagctggcc 122
>emb|BX026450.1|CNS08SKM Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA4CH11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 491 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ccgcatccgcaagctggccc 318 |||||||||||||||||||| Sbjct: 440 ccgcatccgcaagctggccc 459
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccgagctggtgcgccgcatc 305 |||||||||||||||||||| Sbjct: 267517 ccgagctggtgcgccgcatc 267536
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccgagctggtgcgccgcatc 305 |||||||||||||||||||| Sbjct: 33192 ccgagctggtgcgccgcatc 33211
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 cgcgccggcggccgcccctgcctg 121 |||||||||||||||| ||||||| Sbjct: 271353 cgcgccggcggccgcctctgcctg 271330
>emb|CR936877.4| Human DNA sequence from clone DAMC-269O2 on chromosome 6, complete sequence Length = 50562 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 37503 cccccattcctccacccctcccca 37480
>emb|AJ277096.1|HVU277096 Hordeum vulgare mRNA for putative kinetochore protein (skp1 gene) Length = 842 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 cgaccgcctcctccacctcg 93 |||||||||||||||||||| Sbjct: 173 cgaccgcctcctccacctcg 154
>gb|AC094527.7| Rattus norvegicus 5 BAC CH230-4L11 (Children's Hospital Oakland Research Institute) complete sequence Length = 216616 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cccctgcctgtcctctccgc 131 |||||||||||||||||||| Sbjct: 1000 cccctgcctgtcctctccgc 1019
>emb|CR354565.6| Human DNA sequence from clone DAMA-248N13 on chromosome 6, complete sequence Length = 61882 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 48203 cccccattcctccacccctcccca 48180
>emb|CR759733.4| Human DNA sequence from clone DADB-100D22 on chromosome 6, complete sequence Length = 104205 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 62505 cccccattcctccacccctcccca 62482
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccgcctcctccacctcgtcc 96 |||||||||||||||||||| Sbjct: 27715 ccgcctcctccacctcgtcc 27696
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 gcctccggctccggccccgc 232 |||||||||||||||||||| Sbjct: 5423733 gcctccggctccggccccgc 5423752
>gb|AE012177.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 85 of 460 of the complete genome Length = 10568 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 caagggcgccggcgtggacatcga 277 ||||| |||||||||||||||||| Sbjct: 4476 caaggccgccggcgtggacatcga 4453
>gb|AC079385.18| Homo sapiens 12q BAC RP11-482D24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181609 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 cccacccccattcctccaccccac 62 ||||||||||||||||||| |||| Sbjct: 51336 cccacccccattcctccactccac 51359
>dbj|AK160327.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130012G04 product:tafazzin, full insert sequence Length = 1743 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 257 cctccggctccggccccgcc 238
>dbj|AK170662.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630113D08 product:tafazzin, full insert sequence Length = 2369 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 257 cctccggctccggccccgcc 238
>dbj|AK172563.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830213N05 product:tafazzin, full insert sequence Length = 2213 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 267 cctccggctccggccccgcc 248
>ref|NM_181516.2| Mus musculus tafazzin (Taz), mRNA Length = 1784 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 245 cctccggctccggccccgcc 226
>gb|AF002655.1| Ralstonia eutropha HypA2 (hypA2), HypB2 (hypB2) and HypF2 (hypF2) genes, complete cds Length = 3788 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggcgccggcgtggacatcga 277 |||||||||||||||||||| Sbjct: 1512 ggcgccggcgtggacatcga 1531
>dbj|AK019872.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA, RIKEN full-length enriched library, clone:5031411C02 product:hypothetical protein, full insert sequence Length = 2893 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 257 cctccggctccggccccgcc 238
>dbj|AK076481.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833421F09 product:TAFAZZIN homolog [Homo sapiens], full insert sequence Length = 1787 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 256 cctccggctccggccccgcc 237
>gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex BAC MMU404O15, complete sequence Length = 157177 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 141199 cccccattcctccacccctcccca 141176
>gb|AC148707.1| Macaca mulatta Major Histocompatibility Complex BAC MMU380B12, complete sequence Length = 171055 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 6861 cccccattcctccacccctcccca 6838
>gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex BAC MMU103F20, complete sequence Length = 174172 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 99425 cccccattcctccacccctcccca 99402
>dbj|AK075615.1| Mus musculus adult male spleen cDNA, RIKEN full-length enriched library, clone:0910001K21 product:TAFAZZIN homolog [Homo sapiens], full insert sequence Length = 1784 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 245 cctccggctccggccccgcc 226
>dbj|AK004035.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110032K01 product:SIMILAR TO TAFAZZIN (CARDIOMYOPATHY, DILATED 3A (X-LINKED), ENDOCARDIAL FIBROELASTOSIS 2, BARTH SYNDROME) homolog [Mus musculus], full insert sequence Length = 1782 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 245 cctccggctccggccccgcc 226
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 ccgcctcctccacctcgtccgcgcgccg 104 ||||| |||||||||||||| ||||||| Sbjct: 18961464 ccgccgcctccacctcgtccccgcgccg 18961437
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccgcctcctccacctcgtcc 96 |||||||||||||||||||| Sbjct: 40228763 ccgcctcctccacctcgtcc 40228744 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 accgcctcctccacctcgtc 95 |||||||||||||||||||| Sbjct: 2872758 accgcctcctccacctcgtc 2872777
>gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, complete sequence Length = 153731 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 cccacccccattcctccaccccacccca 66 ||||||||||| | |||||||||||||| Sbjct: 78347 cccacccccatccttccaccccacccca 78374 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 cccacccccattcctccaccccacccca 66 ||||||||||| | |||||||||||||| Sbjct: 78240 cccacccccatccttccaccccacccca 78267 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 cccacccccattcctccaccccacccca 66 ||||||||||| | |||||||||||||| Sbjct: 78188 cccacccccatccttccaccccacccca 78215 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 cccacccccattcctccaccccacccca 66 ||||||||||| | |||||||||||||| Sbjct: 78084 cccacccccatccttccaccccacccca 78111 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 cccacccccattcctccaccccacccca 66 ||||||||||| | |||||||||||||| Sbjct: 77980 cccacccccatccttccaccccacccca 78007
>gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosome 14, complete sequence Length = 211647 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ttcctccaccccaccccatg 68 |||||||||||||||||||| Sbjct: 36261 ttcctccaccccaccccatg 36280
>gb|AC011747.8| Homo sapiens BAC clone RP11-434B12 from 2, complete sequence Length = 177433 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 ctccggctccggccccgccg 234 |||||||||||||||||||| Sbjct: 130611 ctccggctccggccccgccg 130630
>gb|AC009034.10| Homo sapiens chromosome 16 clone RP11-141O15, complete sequence Length = 166419 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 acccccattcctccacccca 61 |||||||||||||||||||| Sbjct: 114238 acccccattcctccacccca 114219
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccgcctcctccacctcgtcc 96 |||||||||||||||||||| Sbjct: 94541 ccgcctcctccacctcgtcc 94522
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 cgccggcgtggacatcgacgccgg 283 |||||||||||||||||| ||||| Sbjct: 2640229 cgccggcgtggacatcgaggccgg 2640206
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gccgaccgcctcctccacct 91 |||||||||||||||||||| Sbjct: 1974539 gccgaccgcctcctccacct 1974558
>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0030H07 Length = 168253 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 accgcctcctccacctcgtc 95 |||||||||||||||||||| Sbjct: 79756 accgcctcctccacctcgtc 79775
>dbj|AK174610.1| Ciona intestinalis cDNA, clone:cigd015f02, full insert sequence Length = 2520 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cacgagagagcatccaaaag 24 |||||||||||||||||||| Sbjct: 715 cacgagagagcatccaaaag 696
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccgcctcctccacctcgtcc 96 |||||||||||||||||||| Sbjct: 20113 ccgcctcctccacctcgtcc 20094
>gb|AE005053.1| Halobacterium sp. NRC-1 section 84 of 170 of the complete genome Length = 11842 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgtggacatcgacgccggca 285 |||||||||||||||||||| Sbjct: 1092 cgtggacatcgacgccggca 1111
>emb|Z11488.1|ZMNBPG Z.mays gene for nucleic acid binding protein Length = 3176 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 ccgaccgcctcctccacctcgtcc 96 |||||| ||||||||||||||||| Sbjct: 683 ccgacctcctcctccacctcgtcc 660
>dbj|AK110132.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-C08, full insert sequence Length = 3033 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 257 gggcgccggcgtggacatcgacgccggcaccg 288 |||||||||| || ||||||||||||||||| Sbjct: 2801 gggcgccggcacggccatcgacgccggcaccg 2770
>dbj|AK110055.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-D04, full insert sequence Length = 3506 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 257 gggcgccggcgtggacatcgacgccggcaccg 288 |||||||||| || ||||||||||||||||| Sbjct: 2807 gggcgccggcacggccatcgacgccggcaccg 2776
>gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, complete sequence Length = 215610 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ttcctccaccccaccccatg 68 |||||||||||||||||||| Sbjct: 34328 ttcctccaccccaccccatg 34309
>dbj|AK099844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109B06, full insert sequence Length = 2342 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccgcctcctccacctcgtcc 96 |||||||||||||||||||| Sbjct: 316 ccgcctcctccacctcgtcc 297
>emb|Z83821.1|HS296K21 Human DNA sequence from clone RP1-296K21 on chromosome Xq13, complete sequence Length = 111994 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cccccattcctccaccccac 62 |||||||||||||||||||| Sbjct: 106893 cccccattcctccaccccac 106912
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 tggcggcttcggcggcctct 345 |||||||||||||||||||| Sbjct: 1696886 tggcggcttcggcggcctct 1696905
>gb|BC015305.1| Mus musculus tafazzin, mRNA (cDNA clone MGC:19336 IMAGE:4221041), complete cds Length = 1807 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 253 cctccggctccggccccgcc 234
>emb|AL135746.3|CNS01DVF Human chromosome 14 DNA sequence BAC R-325D8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172800 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ccattcctccaccccacccc 65 |||||||||||||||||||| Sbjct: 39268 ccattcctccaccccacccc 39249
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ctccggctccggccccgccg 234 |||||||||||||||||||| Sbjct: 79098 ctccggctccggccccgccg 79079
>emb|CT573151.3| Platypus DNA sequence from clone CLM1-42M21, complete sequence Length = 120606 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cacccccattcctccacccc 60 |||||||||||||||||||| Sbjct: 18832 cacccccattcctccacccc 18851
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 ctggtgcgccgcatccgcaagctg 314 |||||||||||||||||| ||||| Sbjct: 3993631 ctggtgcgccgcatccgcgagctg 3993608 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gccggcgtggacatcgacgccggc 284 |||||||| ||||||||||||||| Sbjct: 3920052 gccggcgtagacatcgacgccggc 3920075 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgccgaccgcctcctccacc 90 |||||||||||||||||||| Sbjct: 2228770 cgccgaccgcctcctccacc 2228751 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 cggctccggccccgccgacgagga 241 ||||||||||||||||||| |||| Sbjct: 1593621 cggctccggccccgccgacaagga 1593598
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 cggcgtggacatcgacgccg 282 |||||||||||||||||||| Sbjct: 2094642 cggcgtggacatcgacgccg 2094623
>emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chromosome 12, complete sequence Length = 190917 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ctccggctccggccccgccg 234 |||||||||||||||||||| Sbjct: 107743 ctccggctccggccccgccg 107724
>gb|U32169.1|HSU32169 Human pro-a2 chain of collagen type XI (COL11A2) gene, complete cds Length = 28789 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 cccccattcctccaccccacccca 66 |||||||||||||||||| ||||| Sbjct: 2020 cccccattcctccacccctcccca 2043
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 1763562 cctccggctccggccccgcc 1763543
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 ccgcctcctccacctcgtccgcgcgccg 104 ||||| |||||||||||||| ||||||| Sbjct: 18887691 ccgccgcctccacctcgtccccgcgccg 18887664
>emb|AL159992.13| Human DNA sequence from clone RP11-166H7 on chromosome 9q34.13-34.3 Contains the 5' end of the OLFM1 gene for olfactomedin 1 and a CpG island, complete sequence Length = 73073 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cccctgcctgtcctctccgc 131 |||||||||||||||||||| Sbjct: 46554 cccctgcctgtcctctccgc 46535
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 77 ccgcctcctccacctcgtccgcgcgccg 104 ||||| |||||||||||||| ||||||| Sbjct: 8915 ccgccgcctccacctcgtccccgcgccg 8942
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 ccgcctcctccacctcgtccgcgcgccg 104 ||||| |||||||||||||| ||||||| Sbjct: 57581 ccgccgcctccacctcgtccccgcgccg 57554
>gb|U30895.1|VUU30895 Vigna unguiculata aminoimidazole ribonucleotide (AIRS) synthetase (pur5) mRNA, complete cds Length = 1524 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 cgccggcgtggacatcgacgccgg 283 |||||||||||||||||| ||||| Sbjct: 319 cgccggcgtggacatcgatgccgg 342
>emb|AL807376.4| Mouse DNA sequence from clone RP23-436K3 on chromosome X, complete sequence Length = 203189 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cctccggctccggccccgcc 233 |||||||||||||||||||| Sbjct: 65391 cctccggctccggccccgcc 65372
>emb|X74538.1|DHDHNOQ D.hydei (clone DhNo19) gybsy-like sequences Length = 17009 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 gacatcgacgccggcaccga 289 |||||||||||||||||||| Sbjct: 9098 gacatcgacgccggcaccga 9117
>gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP) Length = 1251 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 ccgaccgcctcctccacctcgtcc 96 |||||| ||||||||||||||||| Sbjct: 470 ccgacctcctcctccacctcgtcc 447 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,977,451 Number of Sequences: 3902068 Number of extensions: 2977451 Number of successful extensions: 83449 Number of sequences better than 10.0: 120 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80756 Number of HSP's gapped (non-prelim): 2693 length of query: 386 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 364 effective length of database: 17,147,199,772 effective search space: 6241580717008 effective search space used: 6241580717008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
