ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast33d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF372987.1| Zea mays legumin-like protein (cl2-1) mRNA, complete cds Length = 1357 Score = 341 bits (172), Expect = 1e-90 Identities = 250/276 (90%) Strand = Plus / Plus Query: 127 aaggcgtacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatg 186 ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 87 aaggcctacggcggcgacggcggcgcctactacgagtggagccccgccgacctgcccatg 146 Query: 187 ctcggcgtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctc 246 ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| Sbjct: 147 ctcggcgtcgcctccatcggcgcagccaagctctcgctcgccgccggcgggctcgcgctc 206 Query: 247 cccagctactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcggc 306 ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 207 cccagctactccgactcagccaaggtcgcctacgtcctccaaggcacgggcacctgcggc 266 Query: 307 attgtgctgcctgaggccaccaaggagaaggtggtcgccgtgaaggagggtgacgctctg 366 || || || || ||||| || |||||||||||||| |||||||||||||| ||||| ||| Sbjct: 267 atcgtcctcccagaggcgacgaaggagaaggtggtggccgtgaaggagggcgacgcgctg 326 Query: 367 gcgctcccctttggggtggtcacctggtggcacaac 402 ||||| ||||| || ||||| || |||||||||||| Sbjct: 327 gcgctgcccttcggcgtggtgacgtggtggcacaac 362
>gb|AF372988.1| Zea mays legumin-like protein (cl2-2) mRNA, complete cds Length = 1401 Score = 313 bits (158), Expect = 3e-82 Identities = 269/306 (87%) Strand = Plus / Plus Query: 97 gcggtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctac 156 ||||||||||||||||| ||| ||| ||||| ||||||||||| |||||||||||| Sbjct: 75 gcggtggatctgaccccaaggacgcccaagaaggcctacggcggcgacggcggcgcctac 134 Query: 157 tacgagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaag 216 |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 135 tacgagtggagccccgccgacctgcccatgctcgccgtcgcctccatcggcgccgccaag 194 Query: 217 ctctcgctcgccgccggcggcatgtcgctccccagctactccgactccgccaaggtcgcc 276 ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| Sbjct: 195 ctctcgctcgccgccggcggcctctccctccccagctactccgactccgccaaggtcgcc 254 Query: 277 tacgtcctccaaggcaagggaacctgcggcattgtgctgcctgaggccaccaaggagaag 336 |||||||| |||||| || ||||||||| | || || || ||||| || ||||||||| Sbjct: 255 tacgtcctacaaggcgtcggtacctgcggcctcgtcctccccgaggcgacgaaggagaag 314 Query: 337 gtggtcgccgtgaaggagggtgacgctctggcgctcccctttggggtggtcacctggtgg 396 ||||| || ||||||||||| ||||| |||||||| ||||| || | ||| || |||||| Sbjct: 315 gtggtggcggtgaaggagggcgacgcgctggcgctgcccttcggcgcggtgacgtggtgg 374 Query: 397 cacaac 402 |||||| Sbjct: 375 cacaac 380
>dbj|AK121775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092N18, full insert sequence Length = 1506 Score = 188 bits (95), Expect = 1e-44 Identities = 248/299 (82%) Strand = Plus / Plus Query: 100 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 159 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 255 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 314 Query: 160 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 219 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 315 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 374 Query: 220 tcgctcgccgccggcggcatgtcgctccccagctactccgactccgccaaggtcgcctac 279 |||||| |||||| ||| | | || ||||||| |||||||||| ||||| || || Sbjct: 375 tcgctcaacgccggtggcctcgccctgcccagcttttccgactccggaaaggttgcgtat 434 Query: 280 gtcctccaaggcaagggaacctgcggcattgtgctgcctgaggccaccaaggagaaggtg 339 || || ||||||||||| || || |||||||| ||||| ||||| | ||||||||||||| Sbjct: 435 gttcttcaaggcaagggcacttgtggcattgtcctgccggaggcgagcaaggagaaggtg 494 Query: 340 gtcgccgtgaaggagggtgacgctctggcgctcccctttggggtggtcacctggtggca 398 |||||||||||||||| ||| | ||||| ||||||||||| ||||| || |||||||| Sbjct: 495 atcgccgtgaaggagggagactccctggcactcccctttggcgtggtgacatggtggca 553
>dbj|AK058320.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A11, full insert sequence Length = 1364 Score = 188 bits (95), Expect = 1e-44 Identities = 248/299 (82%) Strand = Plus / Plus Query: 100 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 159 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 103 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 162 Query: 160 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 219 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 163 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 222 Query: 220 tcgctcgccgccggcggcatgtcgctccccagctactccgactccgccaaggtcgcctac 279 |||||| |||||| ||| | | || ||||||| |||||||||| ||||| || || Sbjct: 223 tcgctcaacgccggtggcctcgccctgcccagcttttccgactccggaaaggttgcgtat 282 Query: 280 gtcctccaaggcaagggaacctgcggcattgtgctgcctgaggccaccaaggagaaggtg 339 || || ||||||||||| || || |||||||| ||||| ||||| | ||||||||||||| Sbjct: 283 gttcttcaaggcaagggcacttgtggcattgtcctgccggaggcgagcaaggagaaggtg 342 Query: 340 gtcgccgtgaaggagggtgacgctctggcgctcccctttggggtggtcacctggtggca 398 |||||||||||||||| ||| | ||||| ||||||||||| ||||| || |||||||| Sbjct: 343 atcgccgtgaaggagggagactccctggcactcccctttggcgtggtgacatggtggca 401
>gb|AY183450.1| Zea mays legumin-like protein mRNA, complete cds Length = 1330 Score = 182 bits (92), Expect = 6e-43 Identities = 221/264 (83%) Strand = Plus / Plus Query: 140 gcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggcgtcgcct 199 |||| ||||| ||||||||||| ||| ||| ||||| ||||||||||||||||| |||| Sbjct: 117 gcgacggcggagcctactacgactggtcccccgccgatctgcccatgctcggcgttgcct 176 Query: 200 ccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagctactccg 259 |||| || ||||||||||||| ||| ||||||| || | | || ||||||||||||| Sbjct: 177 ccattggtgccgccaagctctgcctcaccgccggaggtcttgccctacccagctactccg 236 Query: 260 actccgccaaggtcgcctacgtcctccaaggcaagggaacctgcggcattgtgctgcctg 319 |||| |||||| |||||||||||||||||||||| || | | |||| | || || || | Sbjct: 237 actctgccaagatcgcctacgtcctccaaggcaaaggtatattcggcgtggttctcccgg 296 Query: 320 aggccaccaaggagaaggtggtcgccgtgaaggagggtgacgctctggcgctcccctttg 379 |||| |||||||||||||| || |||| ||||| || ||||| |||||||||||||| | Sbjct: 297 aggcgaccaaggagaaggtcatctccgtcaaggaaggcgacgcgctggcgctccccttcg 356 Query: 380 gggtggtcacctggtggcacaaca 403 | || ||||||||||||||||||| Sbjct: 357 gcgtcgtcacctggtggcacaaca 380
>ref|NM_189500.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 127 bits (64), Expect = 3e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 133 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 192 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 85 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 144 Query: 193 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 252 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 145 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 204 Query: 253 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 304 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 205 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 256
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 127 bits (64), Expect = 3e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 133 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 192 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 43129929 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 43129870 Query: 193 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 252 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 43129869 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 43129810 Query: 253 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 304 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 43129809 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 43129758 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 327194 ggtcgccgtggaggagggtgacgc 327217 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 322636 ggtcgccgtggaggagggtgacgc 322659
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 127 bits (64), Expect = 3e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 133 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 192 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 126958 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 126899 Query: 193 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 252 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 126898 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 126839 Query: 253 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 304 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 126838 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 126787
>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0020E09 Length = 149195 Score = 127 bits (64), Expect = 3e-26 Identities = 145/172 (84%) Strand = Plus / Minus Query: 133 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 192 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 17384 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 17325 Query: 193 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 252 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 17324 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 17265 Query: 253 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 304 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 17264 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 17213
>dbj|AK061022.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D01, full insert sequence Length = 1478 Score = 127 bits (64), Expect = 3e-26 Identities = 145/172 (84%) Strand = Plus / Plus Query: 133 tacggcggcgagggcggcgcctactacgagtggagcccggccgagctgcccatgctcggc 192 ||||||||||| |||||| | |||| || ||| ||| ||||||||||||||||| || Sbjct: 147 tacggcggcgaaggcggctcgtactttgattggtccccctccgagctgcccatgctccgc 206 Query: 193 gtcgcctccatcggcgccgccaagctctcgctcgccgccggcggcatgtcgctccccagc 252 | ||||||||||||||||||||| |||||||| |||||||| ||| | | |||||| | Sbjct: 207 gccgcctccatcggcgccgccaaactctcgcttgccgccggaggcctcgccctccccttc 266 Query: 253 tactccgactccgccaaggtcgcctacgtcctccaaggcaagggaacctgcg 304 |||||||| || || ||||| |||||||||||||| |||||||| ||||||| Sbjct: 267 tactccgattcggctaaggtggcctacgtcctccagggcaagggcacctgcg 318
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Minus Query: 288 aggcaagggaacctgcggcattgtgctgcctgaggccaccaaggagaaggtggtcgccgt 347 ||||||||| || || |||||||| ||||| ||||| | ||||||||||||| ||||||| Sbjct: 47593 aggcaagggcacttgtggcattgtcctgccggaggcgagcaaggagaaggtgatcgccgt 47534 Query: 348 gaaggagggtgacgctctggcgctcccctttggggtggtcacctggtggca 398 ||||||||| ||| | ||||| ||||||||||| ||||| || |||||||| Sbjct: 47533 gaaggagggagactccctggcactcccctttggcgtggtgacatggtggca 47483 Score = 99.6 bits (50), Expect = 7e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 100 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 159 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 48919 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 48860 Query: 160 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 219 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 48859 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 48800 Query: 220 tcgctc 225 |||||| Sbjct: 48799 tcgctc 48794
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Minus Query: 288 aggcaagggaacctgcggcattgtgctgcctgaggccaccaaggagaaggtggtcgccgt 347 ||||||||| || || |||||||| ||||| ||||| | ||||||||||||| ||||||| Sbjct: 115612 aggcaagggcacttgtggcattgtcctgccggaggcgagcaaggagaaggtgatcgccgt 115553 Query: 348 gaaggagggtgacgctctggcgctcccctttggggtggtcacctggtggca 398 ||||||||| ||| | ||||| ||||||||||| ||||| || |||||||| Sbjct: 115552 gaaggagggagactccctggcactcccctttggcgtggtgacatggtggca 115502 Score = 99.6 bits (50), Expect = 7e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 100 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 159 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 116938 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 116879 Query: 160 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 219 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 116878 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 116819 Query: 220 tcgctc 225 |||||| Sbjct: 116818 tcgctc 116813
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Minus Query: 288 aggcaagggaacctgcggcattgtgctgcctgaggccaccaaggagaaggtggtcgccgt 347 ||||||||| || || |||||||| ||||| ||||| | ||||||||||||| ||||||| Sbjct: 843170 aggcaagggcacttgtggcattgtcctgccggaggcgagcaaggagaaggtgatcgccgt 843111 Query: 348 gaaggagggtgacgctctggcgctcccctttggggtggtcacctggtggca 398 ||||||||| ||| | ||||| ||||||||||| ||||| || |||||||| Sbjct: 843110 gaaggagggagactccctggcactcccctttggcgtggtgacatggtggca 843060 Score = 99.6 bits (50), Expect = 7e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 100 gtggatctgaccccgaggcagccggcaaaggcgtacggcggcgagggcggcgcctactac 159 ||||||||||||||||||||| || ||||||||||||||||| || || |||||||| Sbjct: 844496 gtggatctgaccccgaggcaggcgaggaaggcgtacggcggcgatggtgggacctactac 844437 Query: 160 gagtggagcccggccgagctgcccatgctcggcgtcgcctccatcggcgccgccaagctc 219 ||||||||||| || || ||||||||||| | ||||| |||||||| ||||||||| Sbjct: 844436 gagtggagccccgcagacctgcccatgctggaactcgccaacatcggcggcgccaagctg 844377 Query: 220 tcgctc 225 |||||| Sbjct: 844376 tcgctc 844371
>gb|AY107295.1| Zea mays PCO117817 mRNA sequence Length = 1107 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 331 gagaaggtggtcgccgtgaaggagggtgacgctctggcgctcccctttggggtggtcacc 390 ||||||||||| || ||||||||||| ||||| |||||||| ||||| || | ||| || Sbjct: 9 gagaaggtggtggcggtgaaggagggcgacgcgctggcgctgcccttcggcgcggtgacg 68 Query: 391 tggtggcacaac 402 |||||||||||| Sbjct: 69 tggtggcacaac 80
>ref|XM_473254.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 429 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 213 caagctctcgctcgccgccggcg 235 ||||||||||||||||||||||| Sbjct: 57 caagctctcgctcgccgccggcg 79
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 213 caagctctcgctcgccgccggcg 235 ||||||||||||||||||||||| Sbjct: 26365862 caagctctcgctcgccgccggcg 26365884 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ctcggcgtcgcctccatcggc 207 ||||||||||||||||||||| Sbjct: 7803929 ctcggcgtcgcctccatcggc 7803949 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ctcggcgtcgcctccatcggc 207 ||||||||||||||||||||| Sbjct: 7796403 ctcggcgtcgcctccatcggc 7796423
>dbj|AK064693.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F03, full insert sequence Length = 737 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 213 caagctctcgctcgccgccggcg 235 ||||||||||||||||||||||| Sbjct: 93 caagctctcgctcgccgccggcg 115
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 213 caagctctcgctcgccgccggcg 235 ||||||||||||||||||||||| Sbjct: 6495 caagctctcgctcgccgccggcg 6517
>emb|CT005238.2| Methylocapsa acidiphila B2, overlapping BAC clones, complete sequence Length = 100887 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Minus Query: 203 tcggcgccgccaagctctcgctcgccgccggcggc 237 |||||||| |||||| | ||||||||||||||||| Sbjct: 84358 tcggcgcctccaagcgcgcgctcgccgccggcggc 84324
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 210 cgccaagctctcgctcgccgccggcg 235 ||||| |||||||||||||||||||| Sbjct: 1964738 cgccatgctctcgctcgccgccggcg 1964763
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 tccttcctgctcgccacggcaa 31 |||||||||||||||||||||| Sbjct: 26920559 tccttcctgctcgccacggcaa 26920538 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cgccgccaagctctcgctcgccgcc 231 |||||||| |||||||||||||||| Sbjct: 25948647 cgccgccatgctctcgctcgccgcc 25948671
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 tccttcctgctcgccacggcaa 31 |||||||||||||||||||||| Sbjct: 44320 tccttcctgctcgccacggcaa 44299
>gb|AF036339.1|AF036339 Euphorbia esula glycine-rich RNA-binding protein (GRRBP1) gene, complete cds Length = 1126 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 330 ggagaaggtggtcgccgtgaaggagg 355 |||| ||||||||||||||||||||| Sbjct: 705 ggaggaggtggtcgccgtgaaggagg 730
>ref|XM_476968.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2015 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cgccgccaagctctcgctcgccgcc 231 |||||||| |||||||||||||||| Sbjct: 33 cgccgccatgctctcgctcgccgcc 57
>gb|AC151106.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNOa0281D22, complete sequence Length = 35282 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ctcggcgtcgcctccatcggc 207 ||||||||||||||||||||| Sbjct: 23428 ctcggcgtcgcctccatcggc 23448
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 cggcgtcgcctccatcggcgc 209 ||||||||||||||||||||| Sbjct: 1558525 cggcgtcgcctccatcggcgc 1558505
>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10, complete sequence Length = 202924 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ctcggcgtcgcctccatcggc 207 ||||||||||||||||||||| Sbjct: 192265 ctcggcgtcgcctccatcggc 192285 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ctcggcgtcgcctccatcggc 207 ||||||||||||||||||||| Sbjct: 184739 ctcggcgtcgcctccatcggc 184759
>emb|AL662948.4|OSJN00150 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060B20, complete sequence Length = 147254 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ctcggcgtcgcctccatcggc 207 ||||||||||||||||||||| Sbjct: 9626 ctcggcgtcgcctccatcggc 9646 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ctcggcgtcgcctccatcggc 207 ||||||||||||||||||||| Sbjct: 2100 ctcggcgtcgcctccatcggc 2120
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 181 cccatgctcggcgtcgcctccatcggcgccgcc 213 |||||||| |||||||| |||||||||||||| Sbjct: 3116144 cccatgctgcgcgtcgccaccatcggcgccgcc 3116176
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cgccgccaagctctcgctcgccgcc 231 |||||||| |||||||||||||||| Sbjct: 4968082 cgccgccatgctctcgctcgccgcc 4968106
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cgccgccaagctctcgctcgccgcc 231 |||||||| |||||||||||||||| Sbjct: 103745 cgccgccatgctctcgctcgccgcc 103769
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cgccgccaagctctcgctcgccgcc 231 |||||||| |||||||||||||||| Sbjct: 9771 cgccgccatgctctcgctcgccgcc 9795
>dbj|AP005173.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003E08 Length = 161095 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cgccgccaagctctcgctcgccgcc 231 |||||||| |||||||||||||||| Sbjct: 153566 cgccgccatgctctcgctcgccgcc 153590
>dbj|AK099718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088A21, full insert sequence Length = 2015 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cgccgccaagctctcgctcgccgcc 231 |||||||| |||||||||||||||| Sbjct: 33 cgccgccatgctctcgctcgccgcc 57
>ref|NM_183485.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1207 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 258 ggtcgccgtggaggagggtgacgc 235
>ref|NM_183484.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1256 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 273 ggtcgccgtggaggagggtgacgc 250
>gb|AY973155.1| Cryptococcus gattii strain WM779 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973122.1| Cryptococcus gattii strain A2M R299 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973121.1| Cryptococcus gattii strain A2M R314 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973120.1| Cryptococcus gattii strain A3M R29 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973119.1| Cryptococcus gattii strain A4M R64 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973118.1| Cryptococcus gattii strain A1M R554 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973117.1| Cryptococcus gattii strain A1M F2863 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973116.1| Cryptococcus gattii strain A1M R794 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973115.1| Cryptococcus gattii strain KB7892 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>gb|AY973114.1| Cryptococcus gattii strain WM179 orotidine monophosphate pyrophosphorylase (URA5) gene, partial cds Length = 751 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 732 cgactccgccaaggtcgcct 713
>ref|XM_362896.1| Magnaporthe grisea 70-15 hypothetical protein (MG08541.4) partial cds Length = 2013 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 catcggcgccgccaagctct 220 |||||||||||||||||||| Sbjct: 619 catcggcgccgccaagctct 600
>ref|XM_367026.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03102.4) partial mRNA Length = 1602 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 210 cgccaagctctcgctcgccgccggcggc 237 |||||||||||||||| ||||||||||| Sbjct: 276 cgccaagctctcgctc-ccgccggcggc 302
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gttcggcggcgatggcggtg 102 |||||||||||||||||||| Sbjct: 3309858 gttcggcggcgatggcggtg 3309839
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 135 cggcggcgagggcggcgcctactacgag 162 ||||| ||||| |||||||||||||||| Sbjct: 102092 cggcgtcgaggtcggcgcctactacgag 102065
>emb|X51756.1|ACVNF Azotobacter chroococcum vnfH, D, G, and K genes, region encoding the structural genes for vanadium nitrogenase Length = 7203 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cgctcgccgccggcggcatg 240 |||||||||||||||||||| Sbjct: 2131 cgctcgccgccggcggcatg 2112
>gb|AY973637.1| Cryptococcus gattii orotidine monophosphate pyrophosphorylase (URA5) gene, URA5-A allele, complete cds Length = 779 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 18 cgactccgccaaggtcgcct 37
>emb|AJ555834.1|CHE555834 Cryptococcus bacillisporus ura5 gene for orotidine monophosphate pyrophosphorylase, exons 1-3, specimen voucher WM779 Length = 779 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 18 cgactccgccaaggtcgcct 37
>emb|AJ555831.1|HSA555831 Cryptococcus bacillisporus ura5 gene for orotidine monophosphate pyrophosphorylase, exons 1-3, specimen voucher WM179 Length = 779 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cgactccgccaaggtcgcct 277 |||||||||||||||||||| Sbjct: 18 cgactccgccaaggtcgcct 37
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cgtcgcctccatcggcgccg 211 |||||||||||||||||||| Sbjct: 673156 cgtcgcctccatcggcgccg 673137
>gb|AY071920.1| Oryza sativa isoflavone reductase-like protein mRNA, complete cds Length = 1203 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 255 ggtcgccgtggaggagggtgacgc 232
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 135 cggcggcgagggcggcgcctactacgag 162 ||||| ||||| |||||||||||||||| Sbjct: 18522777 cggcgtcgaggtcggcgcctactacgag 18522750
>gb|AC113618.5| Homo sapiens BAC clone RP11-1367O10 from 2, complete sequence Length = 199917 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 cacaccctccttcctgctcgccac 26 ||||||||||||||||| |||||| Sbjct: 126227 cacaccctccttcctgcccgccac 126250
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gctctcgctcgccgccggcg 235 |||||||||||||||||||| Sbjct: 4701425 gctctcgctcgccgccggcg 4701444
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ggcggcgatggcggtggatc 106 |||||||||||||||||||| Sbjct: 40445 ggcggcgatggcggtggatc 40464
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 79032 ggtcgccgtggaggagggtgacgc 79055 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 74474 ggtcgccgtggaggagggtgacgc 74497
>dbj|AK109339.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E10, full insert sequence Length = 1206 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 257 ggtcgccgtggaggagggtgacgc 234
>dbj|AK119550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E04, full insert sequence Length = 1265 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 277 ggtcgccgtggaggagggtgacgc 254
>dbj|AK104735.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D01, full insert sequence Length = 1260 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 277 ggtcgccgtggaggagggtgacgc 254
>dbj|AK104669.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-B02, full insert sequence Length = 1256 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 273 ggtcgccgtggaggagggtgacgc 250
>dbj|AK104238.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H12, full insert sequence Length = 1260 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 277 ggtcgccgtggaggagggtgacgc 254
>dbj|AK104189.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C06, full insert sequence Length = 1259 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 277 ggtcgccgtggaggagggtgacgc 254
>dbj|AK102701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103L17, full insert sequence Length = 1207 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 258 ggtcgccgtggaggagggtgacgc 235
>dbj|AK098946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045H04, full insert sequence Length = 1256 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 289 ggtcgccgtggaggagggtgacgc 266
>dbj|AK061325.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G05, full insert sequence Length = 1265 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggtcgccgtgaaggagggtgacgc 362 |||||||||| ||||||||||||| Sbjct: 277 ggtcgccgtggaggagggtgacgc 254
>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence Length = 176325 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ttgtgctgcctgaggccacc 327 |||||||||||||||||||| Sbjct: 116608 ttgtgctgcctgaggccacc 116589
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 135 cggcggcgagggcggcgcctactacgag 162 ||||| ||||| |||||||||||||||| Sbjct: 18682178 cggcgtcgaggtcggcgcctactacgag 18682151
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cgctcgccgccggcggcatg 240 |||||||||||||||||||| Sbjct: 180696 cgctcgccgccggcggcatg 180715
>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete sequence Length = 209053 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tgcctgaggccaccaaggag 333 |||||||||||||||||||| Sbjct: 142069 tgcctgaggccaccaaggag 142050
>dbj|AB005222.1| Acidiphilium organovorum genes for L and M subunits of photosynthetic reaction center complex, partial cds Length = 1578 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gctcggcgtcgcctccatcg 205 |||||||||||||||||||| Sbjct: 987 gctcggcgtcgcctccatcg 1006
>dbj|AB005221.1| Acidiphilium multivorum genes for L and M subunits of photosynthetic reaction center complex, partial cds Length = 1584 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gctcggcgtcgcctccatcg 205 |||||||||||||||||||| Sbjct: 988 gctcggcgtcgcctccatcg 1007
>dbj|AB005220.1| Acidiphilium cryptum genes for L and M subunits of photosynthetic reaction center complex, partial cds Length = 1647 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gctcggcgtcgcctccatcg 205 |||||||||||||||||||| Sbjct: 979 gctcggcgtcgcctccatcg 998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,497,681 Number of Sequences: 3902068 Number of extensions: 3497681 Number of successful extensions: 75411 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 73532 Number of HSP's gapped (non-prelim): 1875 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
