ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast28h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
2dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
3dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
4dbj|AK111086.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 9e-17
5gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 54 3e-04
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.075
7dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.075
8dbj|AK069852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.075
9ref|NM_188578.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
10ref|XM_748398.1| Aspergillus fumigatus Af293 cyclin dependent ki... 42 1.2
11gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.2
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
13dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
14dbj|AK120914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
15ref|XM_594042.2| PREDICTED: Bos taurus similar to Myosin-18B (My... 40 4.6
16gb|AC106040.3| Homo sapiens BAC clone RP13-546K1 from 7, complet... 40 4.6
17emb|CR450806.9| Zebrafish DNA sequence from clone DKEY-110O13 in... 40 4.6
18ref|XM_801914.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 4.6
19emb|CR380958.1| Candida glabrata strain CBS138 chromosome L comp... 40 4.6
20emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; ... 40 4.6
21emb|BX276115.11| Zebrafish DNA sequence from clone DKEY-274M17 i... 40 4.6
22emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 4.6
23gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosy... 40 4.6
24gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 4.6 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  117 bits (59), Expect = 2e-23
 Identities = 139/166 (83%), Gaps = 6/166 (3%)
 Strand = Plus / Plus

                                                                            
Query: 82       gaggtcagggagtacaagagtgacgtcaggaagctcgaggagctgttcaagaagctgaac 141
                ||||| |||||||||||||| ||||  |||||||| ||||||||||||||||||||||||
Sbjct: 20026335 gaggtgagggagtacaagagcgacgcgaggaagctggaggagctgttcaagaagctgaac 20026394

                                                                            
Query: 142      ccctccgcggaggagttcgtgccgctctcccgccgcc------agggggacggtgcccgc 195
                || || || |||||||||||||||||  | |||||||        |||||||| || |||
Sbjct: 20026395 ccgtcggccgaggagttcgtgccgctggcgcgccgccgcggcggcggggacggcgcgcgc 20026454

                                                              
Query: 196      cgcctgtcggccgacgcgcccgtctttgtctcgcccgcgatcgact 241
                || |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 20026455 cggctgtcggcggacgcgcccgtgttcgtgtcccccgcgatcgact 20026500
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>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1068H08
          Length = 152794

 Score =  117 bits (59), Expect = 2e-23
 Identities = 139/166 (83%), Gaps = 6/166 (3%)
 Strand = Plus / Plus

                                                                         
Query: 82    gaggtcagggagtacaagagtgacgtcaggaagctcgaggagctgttcaagaagctgaac 141
             ||||| |||||||||||||| ||||  |||||||| ||||||||||||||||||||||||
Sbjct: 14609 gaggtgagggagtacaagagcgacgcgaggaagctggaggagctgttcaagaagctgaac 14668

                                                                         
Query: 142   ccctccgcggaggagttcgtgccgctctcccgccgcc------agggggacggtgcccgc 195
             || || || |||||||||||||||||  | |||||||        |||||||| || |||
Sbjct: 14669 ccgtcggccgaggagttcgtgccgctggcgcgccgccgcggcggcggggacggcgcgcgc 14728

                                                           
Query: 196   cgcctgtcggccgacgcgcccgtctttgtctcgcccgcgatcgact 241
             || |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 14729 cggctgtcggcggacgcgcccgtgttcgtgtcccccgcgatcgact 14774
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>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1018E06
          Length = 178499

 Score =  117 bits (59), Expect = 2e-23
 Identities = 139/166 (83%), Gaps = 6/166 (3%)
 Strand = Plus / Plus

                                                                          
Query: 82     gaggtcagggagtacaagagtgacgtcaggaagctcgaggagctgttcaagaagctgaac 141
              ||||| |||||||||||||| ||||  |||||||| ||||||||||||||||||||||||
Sbjct: 164675 gaggtgagggagtacaagagcgacgcgaggaagctggaggagctgttcaagaagctgaac 164734

                                                                          
Query: 142    ccctccgcggaggagttcgtgccgctctcccgccgcc------agggggacggtgcccgc 195
              || || || |||||||||||||||||  | |||||||        |||||||| || |||
Sbjct: 164735 ccgtcggccgaggagttcgtgccgctggcgcgccgccgcggcggcggggacggcgcgcgc 164794

                                                            
Query: 196    cgcctgtcggccgacgcgcccgtctttgtctcgcccgcgatcgact 241
              || |||||||| ||||||||||| || || || |||||||||||||
Sbjct: 164795 cggctgtcggcggacgcgcccgtgttcgtgtcccccgcgatcgact 164840
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>dbj|AK111086.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-F09, full
           insert sequence
          Length = 549

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 116/139 (83%), Gaps = 6/139 (4%)
 Strand = Plus / Plus

                                                                       
Query: 109 aggaagctcgaggagctgttcaagaagctgaacccctccgcggaggagttcgtgccgctc 168
           |||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| 
Sbjct: 8   aggaagctggaggagctgttcaagaagctgaacccgtcggccgaggagttcgtgccgctg 67

                                                                       
Query: 169 tcccgccgcc------agggggacggtgcccgccgcctgtcggccgacgcgcccgtcttt 222
            | |||||||        |||||||| || ||||| |||||||| ||||||||||| || 
Sbjct: 68  gcgcgccgccgcggcggcggggacggcgcgcgccggctgtcggcggacgcgcccgtgttc 127

                              
Query: 223 gtctcgcccgcgatcgact 241
           || || |||||||||||||
Sbjct: 128 gtgtcccccgcgatcgact 146
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 266     agcatcagcagatgcacgtgctgcaggtggt 296
               |||||||||||||||||||| ||||||||||
Sbjct: 1320547 agcatcagcagatgcacgtgatgcaggtggt 1320577
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 75      ggaggacgaggtcagggagtacaagagtgacgtcaggaagctcgaggagct 125
               |||||| ||||  |||||||||||||| ||| | |||||||| ||||||||
Sbjct: 8164071 ggaggaggaggagagggagtacaagagcgacatgaggaagctggaggagct 8164121



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 319     agggactctagcagcgacggatcc 342
               |||||||| |||||||||||||||
Sbjct: 8164306 agggactccagcagcgacggatcc 8164329
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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0503B05
          Length = 156814

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                 
Query: 75     ggaggacgaggtcagggagtacaagagtgacgtcaggaagctcgaggagct 125
              |||||| ||||  |||||||||||||| ||| | |||||||| ||||||||
Sbjct: 152264 ggaggaggaggagagggagtacaagagcgacatgaggaagctggaggagct 152314



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 319    agggactctagcagcgacggatcc 342
              |||||||| |||||||||||||||
Sbjct: 152499 agggactccagcagcgacggatcc 152522
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>dbj|AK069852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036I06, full
           insert sequence
          Length = 1660

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 75  ggaggacgaggtcagggagtacaagagtgacgtcaggaagctcgaggagct 125
           |||||| ||||  |||||||||||||| ||| | |||||||| ||||||||
Sbjct: 314 ggaggaggaggagagggagtacaagagcgacatgaggaagctggaggagct 364



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 319 agggactctagcagcgacggatcc 342
           |||||||| |||||||||||||||
Sbjct: 549 agggactccagcagcgacggatcc 572
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>ref|NM_188578.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1737

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 145  tccgcggaggagttcgtgccg 165
            |||||||||||||||||||||
Sbjct: 1411 tccgcggaggagttcgtgccg 1431
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>ref|XM_748398.1| Aspergillus fumigatus Af293 cyclin dependent kinase Pho85
            (Afu5g11590) partial mRNA
          Length = 3600

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  gaggagctgttcaagaagctg 138
            |||||||||||||||||||||
Sbjct: 2908 gaggagctgttcaagaagctg 2928
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 291    ggtggtcggtggcgggggcgg 311
              |||||||||||||||||||||
Sbjct: 794388 ggtggtcggtggcgggggcgg 794408
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 145     tccgcggaggagttcgtgccg 165
               |||||||||||||||||||||
Sbjct: 7054863 tccgcggaggagttcgtgccg 7054883
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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   tccgcggaggagttcgtgccg 165
             |||||||||||||||||||||
Sbjct: 42443 tccgcggaggagttcgtgccg 42463
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>dbj|AK120914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034H03, full
            insert sequence
          Length = 1890

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 145  tccgcggaggagttcgtgccg 165
            |||||||||||||||||||||
Sbjct: 1380 tccgcggaggagttcgtgccg 1400
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>ref|XM_594042.2| PREDICTED: Bos taurus similar to Myosin-18B (Myosin XVIIIb)
            (LOC540437), mRNA
          Length = 5381

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  ccgctctcccgccgccaggg 182
            ||||||||||||||||||||
Sbjct: 4141 ccgctctcccgccgccaggg 4160
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>gb|AC106040.3| Homo sapiens BAC clone RP13-546K1 from 7, complete sequence
          Length = 43674

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    gggaggacgaggtcagggag 93
             ||||||||||||||||||||
Sbjct: 11542 gggaggacgaggtcagggag 11523
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>emb|CR450806.9| Zebrafish DNA sequence from clone DKEY-110O13 in linkage group 24,
              complete sequence
          Length = 217292

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     caaggccagggaggacgagg 85
              ||||||||||||||||||||
Sbjct: 141002 caaggccagggaggacgagg 140983
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>ref|XM_801914.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503643.30) partial mRNA
          Length = 585

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 cgaggagctgttcaagaagc 136
           ||||||||||||||||||||
Sbjct: 474 cgaggagctgttcaagaagc 493
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>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence
          Length = 1440588

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 117     cgaggagctgttcaagaagctgaa 140
               ||||||| ||||||||||||||||
Sbjct: 1029511 cgaggagatgttcaagaagctgaa 1029488
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>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5
          Length = 316900

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 67     aaggccagggaggacgaggtcagggagt 94
              |||||||||||||||| | |||||||||
Sbjct: 154419 aaggccagggaggacgggatcagggagt 154392
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>emb|BX276115.11| Zebrafish DNA sequence from clone DKEY-274M17 in linkage group 11,
              complete sequence
          Length = 175216

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     caaggccagggaggacgagg 85
              ||||||||||||||||||||
Sbjct: 105218 caaggccagggaggacgagg 105199
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   aggagctgttcaagaagctg 138
             ||||||||||||||||||||
Sbjct: 51543 aggagctgttcaagaagctg 51562
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>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene
           cluster, complete sequence
          Length = 59816

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  caaggccagggaggacgagg 85
           ||||||||||||||||||||
Sbjct: 297 caaggccagggaggacgagg 316
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     ccgccgcctgtcggccgacg 211
               ||||||||||||||||||||
Sbjct: 3228860 ccgccgcctgtcggccgacg 3228841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,899,819
Number of Sequences: 3902068
Number of extensions: 1899819
Number of successful extensions: 40988
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40708
Number of HSP's gapped (non-prelim): 280
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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