>NDUB7_HUMAN (P17568) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit|
           7 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone
           oxidoreductase B18 subunit) (Complex I-B18) (CI-B18)
           (Cell adhesion protein SQM1)
          Length = 136

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
 Frame = +3

Query: 147 KPQIATQAEMAEARLPIPYRDQCAHLLIPLNKCRVSEFYLPWKCEPERHSYEKCQY-ELV 323
           +  +ATQ EM +A+L +  RD CAH LI L KC+   F     C+ ERH ++ C++ + V
Sbjct: 36  REMVATQQEMMDAQLRLQLRDYCAHHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYV 95

Query: 324 M--------ERMLQMQKIREAQGGAKVKG 386
           M         R+LQ +K RE +     KG
Sbjct: 96  MRMKEFERERRLLQRKKRREKKAAELAKG 124

>NDUB7_MOUSE (Q9CR61) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit|
           7 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone
           oxidoreductase B18 subunit) (Complex I-B18) (CI-B18)
          Length = 136

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 25/67 (37%), Positives = 41/67 (61%)
 Frame = +3

Query: 156 IATQAEMAEARLPIPYRDQCAHLLIPLNKCRVSEFYLPWKCEPERHSYEKCQYELVMERM 335
           +ATQ EM +A+L +  RD CAH LI L KC+   F     C+ E+H ++ C++   ++RM
Sbjct: 39  VATQQEMMDAQLTLQQRDYCAHYLIRLLKCKRDSFPNFLACKHEQHDWDYCEHLDYVKRM 98

Query: 336 LQMQKIR 356
            + ++ R
Sbjct: 99  KEFERER 105

>NDUB7_BOVIN (Q02368) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit|
           7 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone
           oxidoreductase B18 subunit) (Complex I-B18) (CI-B18)
          Length = 136

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
 Frame = +3

Query: 147 KPQIATQAEMAEARLPIPYRDQCAHLLIPLNKCRVSEFYLPWKCEPERHSYEKCQYELVM 326
           +  +ATQ EM +A+L +  RD CAH LI   KC+   F     C+ ERH ++ C++   +
Sbjct: 36  REMVATQQEMNDAQLVLQQRDYCAHYLIRFLKCKRDSFPNFLACKHERHDWDYCEHLDYV 95

Query: 327 ERM---------LQMQKIREAQGGAKVKG 386
           +RM         LQ +K RE +     KG
Sbjct: 96  KRMKEFERERRLLQRKKRREQREADMAKG 124

>NDUB7_CAEEL (P90789) Probable NADH dehydrogenase [ubiquinone] 1 beta subcomplex|
           subunit 7 (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 123

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +3

Query: 159 ATQAEMAEARLPIPYRDQCAHLLIPLNKCRVSEF-YLPWKCEPERHSYEKCQYELVMERM 335
           AT  EM + +L    RD CAH LI L KC+     +    C+ ER +++KC+Y+  + R+
Sbjct: 44  ATWEEMEQWKLKPAQRDYCAHHLISLMKCQTQNAPFAGHACDGERGAWDKCEYDDHIMRI 103

Query: 336 LQMQKIR 356
            + ++ R
Sbjct: 104 KEFERER 110

>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor|
           (MAdCAM-1) (hMAdCAM-1)
          Length = 406

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   PEPTTTLSPGPRAAPNPHSPSATSPE 81
           PEP  T SP P    +P SP  TSPE
Sbjct: 230 PEPPDTTSPEPPNTTSPESPDTTSPE 255

>POMT1_DROME (Q9VTK2) Protein O-mannosyltransferase 1 (EC 2.4.1.109)|
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           1) (dPOMT1) (Protein rotated abdomen)
          Length = 886

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 4   PEPTTTLSPGPRAAPNPHSPSATSPEKR 87
           P PT T +P P A P   SPS TS   R
Sbjct: 97  PTPTPTATPTPVATPKQASPSPTSDRSR 124

>ADA2B_BRARE (Q90WY5) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Alpha(2B)AR)
          Length = 510

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 10  PTTTLSPG-PRAAPNPHSPSATSPEKREEGERWK 108
           P+TTL+P  P  +P+P + S  +P K +EG++ K
Sbjct: 301 PSTTLTPTTPCPSPSPSNSSEVAPSKSKEGKKEK 334

>HXD1_MOUSE (Q01822) Homeobox protein Hox-D1 (Hox-4.9)|
          Length = 327

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 4   PEPTTTLSPGPRAAPNPHSPSATSP 78
           P P  T+SP P A P P SP+++ P
Sbjct: 174 PGPFQTVSPAPGACPKPASPTSSLP 198

>GUNA_CALSA (P22534) Endoglucanase A precursor (EC 3.2.1.4)|
            (Endo-1,4-beta-glucanase A) (Cellulase A)
          Length = 1742

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 4    PEPTTTLSPGPRAAPNPHSPSATSPEKREEGERW 105
            P PT T++P P  AP P +PS+T     + G+R+
Sbjct: 1089 PTPTPTVTPTPTVAPTP-TPSSTPSGLGKYGQRF 1121

>PI3K4_DICDI (P54676) Phosphatidylinositol 3-kinase VPS34-like (EC 2.7.1.137)|
           (PI3-kinase) (PtdIns-3-kinase) (PI3K)
          Length = 816

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 144 SKPQIATQAEMAEARLPIPYRDQCAHLLIPLNKCRVSEFYLPWKCEPERHSYEKCQYEL 320
           +K QI    E+ E  LPI ++ Q   L IPL++ +     L    E + H  E+  + L
Sbjct: 213 NKNQIYLTIELPEFELPILFKQQNCPLYIPLSQTQKKSLVLINDIEMDEHPSEQKYHRL 271

>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   PEPTTTLSPGPRAAPNPHSPSATSPEKREEGE 99
           PEP T  +P P  AP+P + S  +P   E  E
Sbjct: 344 PEPVTAPTPSPADAPSPTAASPPAPPTDESPE 375

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 4    PEPTTTLSPGPRAAPNPHSPSATSP 78
            P PTTT +P P   P+P + +  SP
Sbjct: 1643 PPPTTTTTPPPTTTPSPPTTTTPSP 1667



 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 4    PEPTTTLSPGPRAAPNPHSPSATSP 78
            P PTTT +P P   P+P + +  SP
Sbjct: 1564 PPPTTTTTPPPTTTPSPPTTTTPSP 1588

>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
           stimulating factor) (Superficial zone proteoglycan)
           [Contains: Proteoglycan-4 C-terminal part]
          Length = 1054

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 4   PEPTTTLSPGPRAAPNPHSPSATSPE 81
           PEPTTT  P P     P S +   PE
Sbjct: 429 PEPTTTKEPEPTTTKEPESTTRKEPE 454



 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 1   RPEPTTTLSPGPRAAPNPHSPSATSPE 81
           +PEPTT   PGP     P   +   PE
Sbjct: 412 KPEPTTPKEPGPTTPKEPEPTTTKEPE 438

>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 730

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 4   PEPTTTLSPGPRAAPNP---HSPSATSPEKREE 93
           P PT++ SPGP  AP+P    +P+A S E   E
Sbjct: 493 PGPTSSPSPGPTGAPSPGPTAAPTAGSSEASTE 525

>FA38A_HUMAN (Q92508) Protein FAM38A|
          Length = 2035

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   RPEPTTTLSP-GPRAAPNPHSPSATSPEKREEGERW 105
           R  P  TL P  P   P P SP  +SP +R+    W
Sbjct: 885 RSRPQDTLGPKDPGLEPGPDSPGGSSPPRRQWWRPW 920


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.302    0.124    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,787,373
Number of Sequences: 219361
Number of extensions: 689909
Number of successful extensions: 2981
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)