>LNK_MOUSE (O09039) Lymphocyte-specific adapter protein Lnk (Signal|
           transduction protein Lnk) (Lymphocyte adapter protein)
          Length = 548

 Score = 35.0 bits (79), Expect = 0.095
 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 224 AWLAEFKLLRLAAGQGPLHPSLPLPAFVAVASGPVRLRGDGPDKARQGTSSS--LDP 388
           +WLAE   LR + G G  HP   LP  +A   GP R      D   QG S    LDP
Sbjct: 269 SWLAE---LRASTGLGLEHPDTELPLSLAAEPGPARSPRGSTDSLDQGASPGVLLDP 322

>IAA16_ORYSA (P0C127) Auxin-responsive protein IAA16 (Indoleacetic acid-induced|
           protein 16)
          Length = 228

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
 Frame = -1

Query: 342 SPRSLTGPEATATKAGSGRDGWRGP--------WPAAR--RRSLNSASQARKNPEMARGW 193
           S   L G  +TA     G DG++          WP  R  RR+L S+S + K P   R  
Sbjct: 28  SSSGLQGNTSTAADGAKGNDGFKASRPAAPVVGWPPVRSFRRNLASSSSSSKPPRGGRDA 87

Query: 192 TARKAKGRNGR 160
            A    G+  R
Sbjct: 88  AAAATGGKVAR 98

>FLHB_ECOLI (P76299) Flagellar biosynthetic protein flhB|
          Length = 382

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 221 LAWLAEFKLLRLAAGQGPLHPS-LPLP 298
           LAW+ + K  RLA GQ P+ P+ LP+P
Sbjct: 343 LAWVWQLKRWRLAGGQRPVQPTHLPVP 369

>MAGI1_HUMAN (Q96QZ7) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 1 (BAI1-associated protein 1)
            (BAP-1) (Membrane-associated guanylate kinase inverted 1)
            (MAGI-1) (Atrophin-1-interacting protein 3) (AIP3) (WW
            domain-containi
          Length = 1491

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 264  PAARRRSLNSASQARKNPEMARGWT-ARKAKGRNGRTA 154
            P+ RRRSL    + R++PE  RG +  R+AK  + R A
Sbjct: 1396 PSRRRRSLERLLEQRRSPERRRGGSPERRAKSTDRRRA 1433

>Y004_MYCSM (Q50434) UPF0232 protein in recF-gyrB intergenic region|
          Length = 194

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -1

Query: 336 RSLTGPEATATKAGSGRDGWRGPWPAARRRSLNSASQARKNPEMARGWTARKAKG 172
           R  +GP A        R  W GP P AR   L  A    ++   +RGW+AR A+G
Sbjct: 52  RGRSGP-ARRVGGNRRRRTWSGPGPDARDPQLLGA--VTQDLAKSRGWSARVAEG 103

>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor|
          Length = 920

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 366 PCRALSG-PSPRSLTGPEATATKAGSGRDGWRGP 268
           P R + G P PR L G     +    GRDG RGP
Sbjct: 844 PGRGVKGLPGPRGLPGEPGKPSYGREGRDGVRGP 877

>UNC5B_HUMAN (Q8IZJ1) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5|
           homolog 2) (p53-regulated receptor for death and life
           protein 1)
          Length = 945

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 275 LHPSLP--LPAFVAVASGPVRLRGDGPDKARQGTSSSLDP 388
           LHPS+P  L A   +  GPV    D  DK     S  LDP
Sbjct: 437 LHPSVPPDLTASAGIYRGPVYALQDSTDKIPMTNSPLLDP 476

>MAGI1_MOUSE (Q6RHR9) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 1 (BAI1-associated protein 1)
            (BAP-1) (Membrane-associated guanylate kinase inverted 1)
            (MAGI-1)
          Length = 1471

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 264  PAARRRSLNSASQARKNPEMARGWT-ARKAKGRNGRTA 154
            P+ RRRSL      R++PE  RG +  R+AK  + R A
Sbjct: 1376 PSRRRRSLERLLDQRRSPERRRGGSPERRAKSTDRRRA 1413

>HEMA_CDVA4 (Q66001) Hemagglutinin glycoprotein|
          Length = 607

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 272 PLHPSLPLPAFVAVASGPVRLRGDGPD 352
           PL PS+ L   ++   GPV L GDG D
Sbjct: 412 PLDPSIDLQLNISFTYGPVILNGDGMD 438

>SOMA_SEBSC (P87391) Somatotropin precursor (Growth hormone)|
          Length = 204

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 372 DVPCRALSGPS-PRSLTGPEATATKAG 295
           ++P R+LSG S PR+L  P+ T  KAG
Sbjct: 103 EIPSRSLSGGSAPRNLISPKLTQLKAG 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,260,820
Number of Sequences: 219361
Number of extensions: 366942
Number of successful extensions: 1297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)