ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast28d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479811.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1596 Score = 93.7 bits (47), Expect = 1e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtggaggcgctcgtggcgcacatccaggccctctccggga 147 ||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||| Sbjct: 104 cggcggcggcgatggagacggtggagacgctggtggcgcacatccagggcctctccggga 163 Query: 148 gcg 150 ||| Sbjct: 164 gcg 166
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 93.7 bits (47), Expect = 1e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtggaggcgctcgtggcgcacatccaggccctctccggga 147 ||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||| Sbjct: 1044395 cggcggcggcgatggagacggtggagacgctggtggcgcacatccagggcctctccggga 1044454 Query: 148 gcg 150 ||| Sbjct: 1044455 gcg 1044457 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cgcggcggcggcgatggagt 105 |||||||||||||||||||| Sbjct: 23377717 cgcggcggcggcgatggagt 23377736 Score = 40.1 bits (20), Expect = 1.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 89 ggcggcggcgatggagtcggtggaggcg 116 |||||||||||||| |||||||||||| Sbjct: 19401872 ggcggcggcgatgggctcggtggaggcg 19401899
>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_B05 Length = 144799 Score = 93.7 bits (47), Expect = 1e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtggaggcgctcgtggcgcacatccaggccctctccggga 147 ||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||| Sbjct: 72922 cggcggcggcgatggagacggtggagacgctggtggcgcacatccagggcctctccggga 72981 Query: 148 gcg 150 ||| Sbjct: 72982 gcg 72984
>dbj|AK099289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023126C02, full insert sequence Length = 1542 Score = 93.7 bits (47), Expect = 1e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtggaggcgctcgtggcgcacatccaggccctctccggga 147 ||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||| Sbjct: 50 cggcggcggcgatggagacggtggagacgctggtggcgcacatccagggcctctccggga 109 Query: 148 gcg 150 ||| Sbjct: 110 gcg 112
>dbj|AK058565.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E02, full insert sequence Length = 1596 Score = 93.7 bits (47), Expect = 1e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtggaggcgctcgtggcgcacatccaggccctctccggga 147 ||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||| Sbjct: 104 cggcggcggcgatggagacggtggagacgctggtggcgcacatccagggcctctccggga 163 Query: 148 gcg 150 ||| Sbjct: 164 gcg 166
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Plus Query: 86 cgcggcggcggcgatggagtcggtg 110 ||||||||||||||||||||||||| Sbjct: 98674 cgcggcggcggcgatggagtcggtg 98698
>ref|XM_478106.1| Oryza sativa (japonica cultivar-group), mRNA Length = 873 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 ggcggcggcgatggagtcggtggag 113 |||||||||||||||| |||||||| Sbjct: 197 ggcggcggcgatggaggcggtggag 221
>gb|AC008517.7| Homo sapiens chromosome 5 clone CTC-458G6, complete sequence Length = 198942 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 aaggagcaagaccaaacccccaaac 79 ||||||||||| ||||||||||||| Sbjct: 42763 aaggagcaagaacaaacccccaaac 42787
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 ggcggcggcgatggagtcggtggag 113 |||||||||||||||| |||||||| Sbjct: 17630668 ggcggcggcgatggaggcggtggag 17630692 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 7932798 ccgcggcggcggcgatgga 7932816
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_F08 Length = 134988 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 ggcggcggcgatggagtcggtggag 113 |||||||||||||||| |||||||| Sbjct: 34701 ggcggcggcgatggaggcggtggag 34725
>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0045A07 Length = 174165 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 ggcggcggcgatggagtcggtggag 113 |||||||||||||||| |||||||| Sbjct: 158617 ggcggcggcgatggaggcggtggag 158641
>dbj|AK108064.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B06, full insert sequence Length = 873 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 ggcggcggcgatggagtcggtggag 113 |||||||||||||||| |||||||| Sbjct: 197 ggcggcggcgatggaggcggtggag 221
>gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GROEL2) gene, complete cds Length = 1814 Score = 42.1 bits (21), Expect = 0.49 Identities = 27/29 (93%) Strand = Plus / Minus Query: 88 cggcggcggcgatggagtcggtggaggcg 116 ||||||||| ||||||| ||||||||||| Sbjct: 557 cggcggcggagatggaggcggtggaggcg 529
>ref|XM_482314.1| Oryza sativa (japonica cultivar-group), mRNA Length = 270 Score = 40.1 bits (20), Expect = 1.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 89 ggcggcggcgatggagtcggtggaggcg 116 |||||||||||||| |||||||||||| Sbjct: 168 ggcggcggcgatgggctcggtggaggcg 195
>ref|XM_482922.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1004 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgcggcggcggcgatggagt 105 |||||||||||||||||||| Sbjct: 753 cgcggcggcggcgatggagt 734
>ref|XM_463528.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 1408 ccgcggcggcggcgatggag 1389
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 tccgcggcggcggcgatggagtcg 107 |||||||||||||||| ||||||| Sbjct: 63703 tccgcggcggcggcgagggagtcg 63726
>gb|AE009368.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 138 of 187 of the complete sequence Length = 12456 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gcgaaaagccgcatcgcgaa 23 |||||||||||||||||||| Sbjct: 2170 gcgaaaagccgcatcgcgaa 2151
>gb|AE009258.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 28 of 187 of the complete sequence Length = 11953 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 accccatccgcggcggcggcgatg 101 |||||||||||| ||||||||||| Sbjct: 10921 accccatccgcgccggcggcgatg 10898
>gb|AE008354.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 158 of 187 of the complete sequence Length = 12433 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 accccatccgcggcggcggcgatg 101 |||||||||||| ||||||||||| Sbjct: 5045 accccatccgcgccggcggcgatg 5068
>gb|AE008246.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 50 of 187 of the complete sequence Length = 10300 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gcgaaaagccgcatcgcgaa 23 |||||||||||||||||||| Sbjct: 4230 gcgaaaagccgcatcgcgaa 4249
>emb|CR731987.2|CNS0GRQW Tetraodon nigroviridis full-length cDNA Length = 1780 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 392 ccgcggcggcggcgatggag 411
>emb|CR726631.2|CNS0GNM5 Tetraodon nigroviridis full-length cDNA Length = 1768 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 382 ccgcggcggcggcgatggag 401
>emb|CR724289.2|CNS0GLT3 Tetraodon nigroviridis full-length cDNA Length = 1770 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 383 ccgcggcggcggcgatggag 402
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gtcggtggaggcgctcgtgg 123 |||||||||||||||||||| Sbjct: 288645 gtcggtggaggcgctcgtgg 288664
>emb|AJ496191.1|SLI496191 Streptomyces lividans spB gene for serine protease Length = 1377 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gtcggtggaggcgctcgtgg 123 |||||||||||||||||||| Sbjct: 894 gtcggtggaggcgctcgtgg 913
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 1.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 88 cggcggcggcgatggagtcggtggaggcgctc 119 ||||||||||| ||||| ||||||||| |||| Sbjct: 2209161 cggcggcggcggtggaggcggtggaggggctc 2209130
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 4143977 ccgcggcggcggcgatggag 4143996 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggagtcg 107 |||||||||||||| |||||||| Sbjct: 21348447 ccgcggcggcggcggtggagtcg 21348469
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 cggcggcggcgatggagtcggtgg 111 ||||||||||||||||| |||||| Sbjct: 17415562 cggcggcggcgatggagacggtgg 17415539 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggagtcg 107 |||||||||||||||||| |||| Sbjct: 25773063 ccgcggcggcggcgatggcgtcg 25773041 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 cggcggcggcgatggagtcggtg 110 ||||||||||||||| ||||||| Sbjct: 2040291 cggcggcggcgatggggtcggtg 2040269 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gatggagtcggtggaggcg 116 ||||||||||||||||||| Sbjct: 1144878 gatggagtcggtggaggcg 1144896 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gatggagtcggtggaggcg 116 ||||||||||||||||||| Sbjct: 1131558 gatggagtcggtggaggcg 1131576
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 tccgcggcggcggcgatggagtcg 107 |||||||||||||||| ||||||| Sbjct: 27983538 tccgcggcggcggcgagggagtcg 27983561
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 38304136 ccgcggcggcggcgatggag 38304155 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 28266364 ccgcggcggcggcgatggag 28266383 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 ccccatccgcggcggcggc 97 ||||||||||||||||||| Sbjct: 19976915 ccccatccgcggcggcggc 19976933 Score = 38.2 bits (19), Expect = 7.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 86 cgcggcggcggcgatggagtcggtggaggcgctcg 120 ||||||||||||| ||| | ||| ||||||||||| Sbjct: 19844412 cgcggcggcggcggtggcggcggcggaggcgctcg 19844446
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 100871 ccgcggcggcggcgatggag 100890
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 64961 ccgcggcggcggcgatggag 64980
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451G12 Length = 142182 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cgcggcggcggcgatggagt 105 |||||||||||||||||||| Sbjct: 59554 cgcggcggcggcgatggagt 59573
>dbj|AP004684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012H03 Length = 163377 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 cggcggcggcgatggagtcggtgg 111 ||||||||||||||||| |||||| Sbjct: 46603 cggcggcggcgatggagacggtgg 46580
>gb|AE005034.1| Halobacterium sp. NRC-1 section 65 of 170 of the complete genome Length = 11258 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggagtcgg 108 |||||||||| ||||||||||||| Sbjct: 3554 ccgcggcggccgcgatggagtcgg 3577
>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0685B10 Length = 148544 Score = 40.1 bits (20), Expect = 1.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 89 ggcggcggcgatggagtcggtggaggcg 116 |||||||||||||| |||||||||||| Sbjct: 131315 ggcggcggcgatgggctcggtggaggcg 131342
>dbj|AK111147.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E09, full insert sequence Length = 1004 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgcggcggcggcgatggagt 105 |||||||||||||||||||| Sbjct: 753 cgcggcggcggcgatggagt 734
>dbj|AK105784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G09, full insert sequence Length = 1773 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 1445 ccgcggcggcggcgatggag 1426
>dbj|AK104093.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F02, full insert sequence Length = 1968 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 tccgcggcggcggcgatggagtcg 107 |||||||||||||||| ||||||| Sbjct: 326 tccgcggcggcggcgagggagtcg 303
>dbj|AK099052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145A19, full insert sequence Length = 2073 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 tccgcggcggcggcgatggagtcg 107 |||||||||||||||| ||||||| Sbjct: 337 tccgcggcggcggcgagggagtcg 314
>dbj|AK073468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046G07, full insert sequence Length = 2002 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 tccgcggcggcggcgatggagtcg 107 |||||||||||||||| ||||||| Sbjct: 365 tccgcggcggcggcgagggagtcg 342
>dbj|AK061470.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D07, full insert sequence Length = 1797 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 1447 ccgcggcggcggcgatggag 1428
>dbj|AK061444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C11, full insert sequence Length = 1662 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 1445 ccgcggcggcggcgatggag 1426
>dbj|AK059325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A01, full insert sequence Length = 1858 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 1568 ccgcggcggcggcgatggag 1549
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 4143964 ccgcggcggcggcgatggag 4143983 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggagtcg 107 |||||||||||||| |||||||| Sbjct: 21274666 ccgcggcggcggcggtggagtcg 21274688
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatggag 104 |||||||||||||||||||| Sbjct: 86373 ccgcggcggcggcgatggag 86392
>dbj|D86327.1| Triticum aestivum mRNA for catalase, complete cds Length = 1573 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggcggcgatggagtcggtg 110 |||||||||||||||||||| Sbjct: 806 cggcggcgatggagtcggtg 787
>gb|AF348492.1| Homo sapiens p600 mRNA, complete cds Length = 15552 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tggagtcggtggaggcgct 118 ||||||||||||||||||| Sbjct: 1699 tggagtcggtggaggcgct 1681
>ref|NM_197381.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0018B10.3), mRNA Length = 1599 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 tccgcggcggcggcgatgg 102 ||||||||||||||||||| Sbjct: 908 tccgcggcggcggcgatgg 926
>ref|XM_477222.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1618 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 70 ccgcggcggcggcgatgga 88
>ref|XM_513158.1| PREDICTED: Pan troglodytes similar to retinoblastoma-associated factor 600 (LOC456576), mRNA Length = 16560 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tggagtcggtggaggcgct 118 ||||||||||||||||||| Sbjct: 2527 tggagtcggtggaggcgct 2509
>ref|XM_676248.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8071.2), mRNA Length = 2289 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 gcggcggcggcgatggagt 105 ||||||||||||||||||| Sbjct: 2249 gcggcggcggcgatggagt 2267
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 38.2 bits (19), Expect = 7.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 13 cgcatcgcgaacggcgccagaccaaac 39 |||| ||||||| |||||||||||||| Sbjct: 2421766 cgcagcgcgaactgcgccagaccaaac 2421740
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 gcggcggcggcgatggagt 105 ||||||||||||||||||| Sbjct: 9967117 gcggcggcggcgatggagt 9967135
>ref|XM_980597.1| PREDICTED: Mus musculus zinc finger, UBR1 type 1 (Zubr1), mRNA Length = 15384 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tggagtcggtggaggcgct 118 ||||||||||||||||||| Sbjct: 1804 tggagtcggtggaggcgct 1786
>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone OSJNBb0027B12, from chromosome 3, complete sequence Length = 127426 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 gcggcggcggcgatggagt 105 ||||||||||||||||||| Sbjct: 17033 gcggcggcggcgatggagt 17051
>gb|AC115752.8| Mus musculus chromosome 19, clone RP23-18M16, complete sequence Length = 214925 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 accaaacccccaaacccca 83 ||||||||||||||||||| Sbjct: 146905 accaaacccccaaacccca 146923
>gb|AY957398.1| Sorghum bicolor RAMOSA1 C2H2 zinc-finger transcription factor (ramosa1) gene, complete cds Length = 6017 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 cgcggcggcggcgatggag 104 ||||||||||||||||||| Sbjct: 3648 cgcggcggcggcgatggag 3666
>emb|AL357564.17| Human DNA sequence from clone RP1-43E13 on chromosome 1 Contains the 5' end of the gene for retinoblastoma-associated factor. 600 (RBAF600) and the 3' end of a novel gene, complete sequence Length = 63684 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggagtcggtggaggcgct 118 ||||||||||||||||||| Sbjct: 32128 tggagtcggtggaggcgct 32146
>emb|AL117376.28|HSDJ971B4 Human DNA sequence from clone RP5-971B4 on chromosome 20 Contains the 3' end of the C20orf23 gene for a novel protein similar to KIF1 type and other kinesin-like proteins, complete sequence Length = 162213 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 accaaacccccaaacccca 83 ||||||||||||||||||| Sbjct: 44232 accaaacccccaaacccca 44250
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 cgcggcggcggcgatggag 104 ||||||||||||||||||| Sbjct: 64790 cgcggcggcggcgatggag 64808
>gb|AE008881.1| Salmonella typhimurium LT2, section 185 of 220 of the complete genome Length = 21570 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 gaacggcgccagaccaaac 39 ||||||||||||||||||| Sbjct: 1835 gaacggcgccagaccaaac 1817
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 cccatccgcggcggcggcg 98 ||||||||||||||||||| Sbjct: 15607 cccatccgcggcggcggcg 15589
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 cccatccgcggcggcggcg 98 ||||||||||||||||||| Sbjct: 115134 cccatccgcggcggcggcg 115116
>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 16/20 Length = 245050 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 gaacggcgccagaccaaac 39 ||||||||||||||||||| Sbjct: 35436 gaacggcgccagaccaaac 35454
>emb|CR619441.1| full-length cDNA clone CS0DG003YA13 of B cells (Ramos cell line) of Homo sapiens (human) Length = 479 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tggagtcggtggaggcgct 118 ||||||||||||||||||| Sbjct: 343 tggagtcggtggaggcgct 325
>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete sequence Length = 135789 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tccgcggcggcggcgatgg 102 ||||||||||||||||||| Sbjct: 20768 tccgcggcggcggcgatgg 20750
>ref|NM_020765.2| Homo sapiens zinc finger, UBR1 type 1 (ZUBR1), mRNA Length = 15882 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tggagtcggtggaggcgct 118 ||||||||||||||||||| Sbjct: 1703 tggagtcggtggaggcgct 1685
>gb|AC124316.32| Mus musculus chromosome 17, clone RP24-222O13, complete sequence Length = 223552 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 cggcgccagaccaaacccc 42 ||||||||||||||||||| Sbjct: 103810 cggcgccagaccaaacccc 103792
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 cccatccgcggcggcggcg 98 ||||||||||||||||||| Sbjct: 25233467 cccatccgcggcggcggcg 25233449
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tccgcggcggcggcgatgg 102 ||||||||||||||||||| Sbjct: 19563577 tccgcggcggcggcgatgg 19563559
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 gcggcggcggcgatggagt 105 ||||||||||||||||||| Sbjct: 9965238 gcggcggcggcgatggagt 9965256
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 34200695 ccgcggcggcggcgatgga 34200677 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 agccaaggagcaagaccaa 69 ||||||||||||||||||| Sbjct: 27549739 agccaaggagcaagaccaa 27549721 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 accaaacccccaaacccca 83 ||||||||||||||||||| Sbjct: 107847 accaaacccccaaacccca 107829
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 ccccatccgcggcggcggc 97 ||||||||||||||||||| Sbjct: 79824 ccccatccgcggcggcggc 79842
>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0047D12 Length = 145981 Score = 38.2 bits (19), Expect = 7.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 86 cgcggcggcggcgatggagtcggtggaggcgctcg 120 ||||||||||||| ||| | ||| ||||||||||| Sbjct: 67370 cgcggcggcggcggtggcggcggcggaggcgctcg 67404
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 gaacggcgccagaccaaac 39 ||||||||||||||||||| Sbjct: 3860806 gaacggcgccagaccaaac 3860788
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 agccaaggagcaagaccaa 69 ||||||||||||||||||| Sbjct: 29408 agccaaggagcaagaccaa 29390
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 agccaaggagcaagaccaa 69 ||||||||||||||||||| Sbjct: 141461 agccaaggagcaagaccaa 141443
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gatggagtcggtggaggcg 116 ||||||||||||||||||| Sbjct: 121101 gatggagtcggtggaggcg 121119 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gatggagtcggtggaggcg 116 ||||||||||||||||||| Sbjct: 107781 gatggagtcggtggaggcg 107799
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 cggcggcggcgatggagtcggtg 110 ||||||||||||||| ||||||| Sbjct: 61153 cggcggcggcgatggggtcggtg 61131
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggagtcg 107 |||||||||||||||||| |||| Sbjct: 55267 ccgcggcggcggcgatggcgtcg 55245
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0032L17 Length = 165808 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 128209 ccgcggcggcggcgatgga 128191
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 35968 ccgcggcggcggcgatgga 35950
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 accaaacccccaaacccca 83 ||||||||||||||||||| Sbjct: 102456 accaaacccccaaacccca 102438
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 accaaacccccaaacccca 83 ||||||||||||||||||| Sbjct: 56874 accaaacccccaaacccca 56856
>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0418E08 Length = 141040 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 49157 ccgcggcggcggcgatgga 49175
>dbj|AK109498.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H03, full insert sequence Length = 1431 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 37 ccgcggcggcggcgatgga 19
>dbj|AK109488.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G01, full insert sequence Length = 1255 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 96 ccgcggcggcggcgatgga 78
>dbj|AK107239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F03, full insert sequence Length = 1618 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 ccgcggcggcggcgatgga 103 ||||||||||||||||||| Sbjct: 70 ccgcggcggcggcgatgga 88
>emb|AJ341416.1|HSA341416 Homo sapiens genomic sequence surrounding NotI site, clone HSJ-BF1RS Length = 867 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtg 110 ||||||||||| ||||||||||| Sbjct: 213 cggcggcggcggtggagtcggtg 235
>emb|AJ342052.1|HSA342052 Homo sapiens genomic sequence surrounding NotI site, clone HSJ-CM8RS Length = 799 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtg 110 ||||||||||| ||||||||||| Sbjct: 213 cggcggcggcggtggagtcggtg 235
>emb|AJ325473.1|HSA325473 Homo sapiens genomic sequence surrounding NotI site, clone HSJ41-822 Length = 578 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtg 110 ||||||||||| ||||||||||| Sbjct: 213 cggcggcggcggtggagtcggtg 235
>dbj|AK072700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135G07, full insert sequence Length = 2409 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 gcggcggcggcgatggagt 105 ||||||||||||||||||| Sbjct: 216 gcggcggcggcgatggagt 234
>dbj|AK072307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020N11, full insert sequence Length = 2010 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggagtcg 107 |||||||||||||||||| |||| Sbjct: 816 ccgcggcggcggcgatggcgtcg 794
>dbj|AK069536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022B22, full insert sequence Length = 1296 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtg 110 ||||||||||||||| ||||||| Sbjct: 37 cggcggcggcgatggggtcggtg 59
>dbj|AK067059.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090O06, full insert sequence Length = 2127 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggagtcg 107 |||||||||||||||||| |||| Sbjct: 795 ccgcggcggcggcgatggcgtcg 773
>dbj|AK066485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068J24, full insert sequence Length = 1693 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 cggcggcggcgatggagtcggtg 110 ||||||||||||||| ||||||| Sbjct: 130 cggcggcggcgatggggtcggtg 152
>dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P05, full insert sequence Length = 2289 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 agccaaggagcaagaccaa 69 ||||||||||||||||||| Sbjct: 2059 agccaaggagcaagaccaa 2077
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 gaacggcgccagaccaaac 39 ||||||||||||||||||| Sbjct: 3748927 gaacggcgccagaccaaac 3748945
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 gaacggcgccagaccaaac 39 ||||||||||||||||||| Sbjct: 4020842 gaacggcgccagaccaaac 4020824
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tccgcggcggcggcgatgg 102 ||||||||||||||||||| Sbjct: 3105553 tccgcggcggcggcgatgg 3105535 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 cggcggcggcgatggagtcggtg 110 ||||||||||| ||||||||||| Sbjct: 594794 cggcggcggcggtggagtcggtg 594772
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tccgcggcggcggcgatgg 102 ||||||||||||||||||| Sbjct: 19574853 tccgcggcggcggcgatgg 19574835
>emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103_B10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 95132 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 85 ccgcggcggcggcgatggagtcg 107 |||||||||||||| |||||||| Sbjct: 12831 ccgcggcggcggcggtggagtcg 12809
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccaaacccccaaaccccat 84 ||||||||||||||||||| Sbjct: 2144238 ccaaacccccaaaccccat 2144256
>emb|AL807833.5| Mouse DNA sequence from clone RP23-371E13 on chromosome 4, complete sequence Length = 188795 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tggagtcggtggaggcgct 118 ||||||||||||||||||| Sbjct: 27792 tggagtcggtggaggcgct 27774 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,441,311 Number of Sequences: 3902068 Number of extensions: 1441311 Number of successful extensions: 134605 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128170 Number of HSP's gapped (non-prelim): 6435 length of query: 158 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 136 effective length of database: 17,147,199,772 effective search space: 2332019168992 effective search space used: 2332019168992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
