ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast28c12 |
|---|---|
| Clone Library Name | barley_pub |
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 74.3 bits (181), Expect = 2e-13 Identities = 34/72 (47%), Positives = 48/72 (66%) Frame = +2 Query: 263 VPGVMIFGDSVVDAGNNNRLATLVRADFPPYGRDFPATHAPTGRFCNGKLATDYTVESLG 442 +P V FGDS+ D GNNN L T ++ ++ PYG DFP A TGRF NG++A+DY + LG Sbjct: 123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVA-TGRFSNGRVASDYISKYLG 181 Query: 443 LSSYPPAYLSEE 478 + PAY+ ++ Sbjct: 182 VKEIVPAYVDKK 193
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 72.4 bits (176), Expect = 6e-13 Identities = 34/69 (49%), Positives = 45/69 (65%) Frame = +2 Query: 263 VPGVMIFGDSVVDAGNNNRLATLVRADFPPYGRDFPATHAPTGRFCNGKLATDYTVESLG 442 +P V FGDSV D GNNN L T +++++ PYG DF A TGRF NG +A+DY + +G Sbjct: 202 IPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVA-TGRFSNGMVASDYLAKYMG 260 Query: 443 LSSYPPAYL 469 + PAYL Sbjct: 261 VKEIVPAYL 269
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/74 (39%), Positives = 38/74 (51%) Frame = +2 Query: 248 AGQALVPGVMIFGDSVVDAGNNNRLATLVRADFPPYGRDFPATHAPTGRFCNGKLATDYT 427 A Q P + FGDS D G L+ PP+G F + P GR+C+G+L D+ Sbjct: 23 AHQCHFPAIFNFGDSNSDTGG---LSAAFGQAGPPHGSSFFGS--PAGRYCDGRLVIDFI 77 Query: 428 VESLGLSSYPPAYL 469 ESLGL Y A+L Sbjct: 78 AESLGL-PYLSAFL 90
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 40.0 bits (92), Expect = 0.003 Identities = 27/69 (39%), Positives = 32/69 (46%) Frame = +2 Query: 266 PGVMIFGDSVVDAGNNNRLATLVRADFPPYGRDFPATHAPTGRFCNGKLATDYTVESLGL 445 P + FGDS D G A PPYG F H TGR+ +G+L D+ ES L Sbjct: 33 PAIFNFGDSNSDTGGK---AAAFYPLNPPYGETF--FHRSTGRYSDGRLIIDFIAESFNL 87 Query: 446 SSYPPAYLS 472 P YLS Sbjct: 88 PYLSP-YLS 95
>NEP1_DROME (Q9W4J5) Probable ribosome biogenesis protein NEP1| Length = 252 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = +2 Query: 341 DFPPYGRDFPATHAPT-----GRFCNGKLATDYTVESLGLSSYP 457 D P+G + A++ G F +G L TDYT E +S+YP Sbjct: 188 DLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYTEELFSISNYP 231
>VE2_HPV25 (P36787) Regulatory protein E2| Length = 502 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 9/66 (13%) Frame = +2 Query: 2 THTTGRARLSTESSRAPHAPSTSTTRRLAGSPPKPRAYTS---------AGAGRSARVRE 154 + + R + S R P +P+T+T+ R A SP + TS AG+ R R R Sbjct: 302 SRSRSRRKTSATRGRGPGSPTTTTSDRAARSPSTTSSATSQRSQRSRSRAGSSRGGRGRG 361 Query: 155 TSSMHR 172 HR Sbjct: 362 GRRRHR 367
>PANK2_HUMAN (Q9BZ23) Pantothenate kinase 2, mitochondrial precursor (EC| 2.7.1.33) (Pantothenic acid kinase 2) (hPANK2) Length = 570 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -2 Query: 476 PRSGTPAGTSSAPGSPRCSRWRACRYRSGRWGR 378 PR P G + SP S W R+R+GR GR Sbjct: 58 PRVREPTGREAFGPSPASSDWLPARWRNGRGGR 90
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 30.0 bits (66), Expect = 3.3 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 11/84 (13%) Frame = +2 Query: 248 AGQALVPGVMIFGDSVVDAGNNNRLATLVR-------ADFPPYGRDFPATHAP----TGR 394 AGQ+LV V V+ GN T+ R +D YG D P P T Sbjct: 13 AGQSLVKPVNELSRKVL--GNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPS 70 Query: 395 FCNGKLATDYTVESLGLSSYPPAY 466 + NG+ A DY ++ GLSS P + Sbjct: 71 YLNGEFAGDYGWDTAGLSSDPETF 94
>CD97_MOUSE (Q9Z0M6) CD97 antigen precursor| Length = 818 Score = 30.0 bits (66), Expect = 3.3 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +1 Query: 19 RASVNRKQQSAPRSIYIYYPAPGRFSSETTRLHQCRCRSKRART 150 +ASVN P I+ APG +TT +HQ + RT Sbjct: 119 QASVNTGTTPVPSRIHTVTTAPGNLPEQTTTVHQTQMGDSEERT 162
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +2 Query: 35 ESSRAPHAPS-TSTTRRLAGSPPKPRAYTSAGAGRSAR 145 E++ AP APS STTR GS +P A AGRS + Sbjct: 814 EATAAPAAPSGASTTRMQIGSSTEPPTTRLAAAGRSVQ 851
>ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing protein 3| Length = 948 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Frame = -2 Query: 455 GTSSAPGSPRCSRWRACRYRSGR-WGRVWPXXXXXXXXXXRAPAW 324 G + APG+P S W+ Y SGR + +P P+W Sbjct: 26 GNAPAPGTPAASGWQPPTYHSGRAFSARYPRPSRRGYSSHHGPSW 70
>PCL_DROME (Q24459) Polycomb protein Pcl (Polycomblike protein)| Length = 1043 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 4 PHHRPRASVNRKQQSAPRSIYIYYPAPGRFSSETTRLHQCRCRS 135 P+H + S + K + IY Y PG+F + L C+CR+ Sbjct: 494 PYHADKLSWDEKHRVNEEQIYCYCGKPGKF--DHNMLQCCKCRN 535
>JHD2A_CHICK (Q5ZIX8) JmjC domain-containing histone demethylation protein 2A (EC| 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1325 Score = 29.6 bits (65), Expect = 4.4 Identities = 10/18 (55%), Positives = 17/18 (94%) Frame = -3 Query: 331 QRGQPVVVAGVHHRVSED 278 ++GQPV+V+GVHH+++ D Sbjct: 974 KQGQPVMVSGVHHKLNAD 991
>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 730 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +3 Query: 3 PTPPAARVCQPKAAERPTLHLHLLPGAWPVLLRNHAPTPVPVP 131 P PPA +P+ PT+ + P A+P + PT P P Sbjct: 451 PRPPATTTTEPQPTAPPTMCPTIPPTAYPTVGPTVGPTGAPSP 493
>WIS1_SCHPO (P33886) Protein kinase wis1 (EC 2.7.12.2) (Protein kinase sty2)| Length = 605 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +2 Query: 14 GRARLSTESSRAPHAPSTST-TRRLAGSPPKPRAYTSAGAGRSARVRETSSMHRQM 178 G L++ SS + + S+ +R + PP PRA + GRS R +S++ M Sbjct: 52 GSLSLNSNSSGSDNDSKVSSPSREIPSDPPLPRAVPTVRLGRSTSSRSRNSLNLDM 107
>ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase| type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase 9) (xlAC) Length = 1305 Score = 28.9 bits (63), Expect = 7.5 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = -3 Query: 133 TGTGTGVGAWFRRRTGQAPGSRCRWSVGRSAAFG*Q-TRAAGGVG 2 +G G+ V R+ QAP RC++S+ S + G + GG G Sbjct: 20 SGDGSSVTVRINRQHHQAPSRRCKYSISSSCSSGESGVKKTGGSG 64
>AREA_PENCH (Q01582) Nitrogen regulatory protein areA (Nitrogen regulator nre)| Length = 725 Score = 28.9 bits (63), Expect = 7.5 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +2 Query: 2 THTTGRARLSTESSRA---PHAPSTSTTRRLAGSPPKPRAYTSAGAGR 136 T T G +R S +SSR HAPSTS + R+ S P S+ G+ Sbjct: 579 TLTVGTSRSSKKSSRKNSIQHAPSTSISSRMNTSESPPSINGSSTLGK 626
>PHXR5_MOUSE (P08399) Per-hexamer repeat protein 5| Length = 672 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -3 Query: 151 TYARASTGTGTGVGAWFRRRTGQAPGSRCRWSVGRSAAFG*QTRAAGGVG 2 T + + TGTGTG G+ + TG A G+ G G T G G Sbjct: 341 TGSGSGTGTGTGSGSGTAKVTGTATGTGTGTDTGTGTGTGTGTGTGSGSG 390
>GSCL_MOUSE (P56916) Homeobox protein goosecoid-like (GSC-2)| Length = 198 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 27 CQPKAAERPTLHLHLLPGAWPVLLRNHAPTPVPVP 131 C P+AA R T L AWP+ L P+P+ P Sbjct: 67 CNPRAATRGTPETAGLRLAWPLRLAPATPSPLTAP 101
>RW1_HUMAN (Q92545) RW1 protein (Fragment)| Length = 1805 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +2 Query: 26 LSTESSRAPHAPSTSTTRRLAGSPPKPRAYTSAGAGR 136 + TE+S APHAPSTS+ G P S GR Sbjct: 1754 MGTENSPAPHAPSTSSPADDLGQTYNPWRIWSPTIGR 1790
>JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylation protein 2A (EC| 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1321 Score = 28.5 bits (62), Expect = 9.7 Identities = 9/18 (50%), Positives = 17/18 (94%) Frame = -3 Query: 331 QRGQPVVVAGVHHRVSED 278 ++GQPV+V+GVHH+++ + Sbjct: 971 KQGQPVMVSGVHHKLNSE 988
>ACPS_BACHK (Q6HPE3) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 119 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -3 Query: 406 AVTEAAGGGVCGREVAAVGREVGAHQRGQPVVVAGVHHRV 287 A ++A G G+ G+EV+ + EV RG+P+++ H V Sbjct: 59 AYSKAVGTGI-GKEVSFLDIEVRNDDRGKPILITSTEHIV 97
>ACPS_BACCZ (Q63GX2) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 119 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -3 Query: 406 AVTEAAGGGVCGREVAAVGREVGAHQRGQPVVVAGVHHRV 287 A ++A G G+ G+EV+ + EV RG+P+++ H V Sbjct: 59 AYSKAVGTGI-GKEVSFLDIEVRNDDRGKPILITSTEHIV 97
>ACPS_BACC1 (Q73ET8) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 119 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -3 Query: 406 AVTEAAGGGVCGREVAAVGREVGAHQRGQPVVVAGVHHRV 287 A ++A G G+ G+EV+ + EV RG+P+++ H V Sbjct: 59 AYSKAVGTGI-GKEVSFLDIEVRNDDRGKPILITSTEHIV 97
>ACPS_BACAN (Q81JG3) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 119 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -3 Query: 406 AVTEAAGGGVCGREVAAVGREVGAHQRGQPVVVAGVHHRV 287 A ++A G G+ G+EV+ + EV RG+P+++ H V Sbjct: 59 AYSKAVGTGI-GKEVSFLDIEVRNDDRGKPILITSTEHIV 97
>MMP9_RAT (P50282) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 708 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +3 Query: 3 PTPPAARVCQPKAAERPTLHLHLLPGAWPVLLRNHAPTPVPVP 131 P PPA +P+ PT+ P A+P APT P P Sbjct: 452 PRPPATTAAEPQPTAPPTMCSTAPPMAYPTGGPTVAPTGAPSP 494
>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)| Length = 860 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +2 Query: 2 THTTGRARLSTESSRA---PHAPSTSTTRRLAGSPPKPRAYTSAGAGRSARV 148 T G +R S +SSR HAPSTS + R+ S P S+ G++ V Sbjct: 714 TLAVGTSRSSKKSSRKNSIQHAPSTSISSRMNTSESPPSMNGSSSLGKTGVV 765 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,264,665 Number of Sequences: 219361 Number of extensions: 1132083 Number of successful extensions: 6208 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4577 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5994 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
