>POLG_KUNJM (P14335) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3433

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 135 AWV*EASIGALLAWVGIGRRD 73
           +W+ +  +GALL W+GI  RD
Sbjct: 748 SWITQGLLGALLLWMGINARD 768

>POLG_WNV (P06935) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit; F
          Length = 3430

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 135 AWV*EASIGALLAWVGIGRRD 73
           +W+ +  +GALL W+GI  RD
Sbjct: 744 SWITQGLLGALLLWMGINARD 764

>POLG_JAEVN (P14403) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 1440

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 135 AWV*EASIGALLAWVGIGRRD 73
           +W+ +  +GALL W+G+  RD
Sbjct: 679 SWITQGLMGALLLWMGVNARD 699

>CNC_DROME (P20482) Segmentation protein cap'n'collar|
          Length = 1383

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 76  SPSNSNPSKQGTYTRLSNPSKASLKPPP 159
           SPSN  P   G + +  + + A+L+PPP
Sbjct: 720 SPSNGAPGTPGQHGQYGSGANATLQPPP 747

>POLG_JAEVJ (P32886) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3432

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 135 AWV*EASIGALLAWVGIGRRD 73
           +W+ +  +GALL W+G+  RD
Sbjct: 751 SWITQGLMGALLLWMGVNARD 771

>POLG_JAEV5 (P19110) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3432

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 135 AWV*EASIGALLAWVGIGRRD 73
           +W+ +  +GALL W+G+  RD
Sbjct: 751 SWITQGLMGALLLWMGVNARD 771

>POLG_JAEV1 (P27395) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3432

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 135 AWV*EASIGALLAWVGIGRRD 73
           +W+ +  +GALL W+G+  RD
Sbjct: 751 SWITQGLMGALLLWMGVNARD 771

>AP3D_ASHGO (Q755A1) AP-3 complex subunit delta (Adapter-related protein|
           complex 3 delta subunit) (Delta-adaptin 3) (AP-3 complex
           delta subunit) (Delta-adaptin)
          Length = 899

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 82  SNSNPSKQGTYTRLSNPSKASLK 150
           SNS PS  G+  RLS+ SKA  K
Sbjct: 743 SNSKPSSSGSLVRLSSESKAKEK 765

>NAS29_CAEEL (Q20958) Zinc metalloproteinase nas-29 precursor (EC 3.4.24.21)|
           (Nematode astacin 29)
          Length = 532

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 42  CINLILILVDCLSFQFQPKQARHLYSPLKP 131
           C  LIL+L  C+S QF   ++  L+  LKP
Sbjct: 9   CGFLILVLATCMSAQFVSNESIKLHDILKP 38

>SYV_PARUW (Q6MAM1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 949

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 91  WNWKERQSTRI--RIRLMHDSKDWTGL 17
           W WKE+   RI  +++ + +S DWT L
Sbjct: 118 WTWKEKSENRIIEQLKRLGNSCDWTRL 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,401,405
Number of Sequences: 219361
Number of extensions: 475150
Number of successful extensions: 1562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)