ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast28a03 |
|---|---|
| Clone Library Name | barley_pub |
>FRIGI_ARATH (Q9FDW0) FRIGIDA protein| Length = 609 Score = 42.4 bits (98), Expect = 6e-04 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 2/141 (1%) Frame = +2 Query: 38 KNHSVQGQRRSCIVLMEAIAHSLGMKEPG-GKHLWSSEIMEQAKAIAEEWKSKI-AEVDL 211 K + R+ ++++E+ L M + G GK S I ++A+ A W+ ++ E L Sbjct: 206 KESPMSSARQVSLLILESF---LLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGL 262 Query: 212 DASDGYSLEAQAFLQLLATFNIDLVLDEDELCKIVVAVSRRKQAAELCRSLGFAERIPGV 391 A++ ++A+ L L+A F + +L ++ + A L RS + G+ Sbjct: 263 AAAE--KMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQFLVPMVSGI 320 Query: 392 IEELIKKHRQIDAVQFIQAFG 454 +E IK+ I+A++ + FG Sbjct: 321 VESSIKRGMHIEALEMVYTFG 341
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 30.8 bits (68), Expect = 1.7 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Frame = -1 Query: 374 QQNQESDIAQQPACDERRQLQSCIVHLRQAPNQY*KLQEAAGMPVLPM---SSHQKHQGQ 204 Q+ +S QP+ R+L + + L+Q P QY L A + + S+HQK Q Q Sbjct: 1522 QRMLQSTSVLQPS----RELDAFLQQLQQNPQQYANLSAAEKLALQQYQIHSAHQKSQQQ 1577 Query: 203 PQLSYSSTLRQ 171 QL + L+Q Sbjct: 1578 AQLQAAQQLQQ 1588
>NHR28_CAEEL (Q17905) Nuclear hormone receptor family member nhr-28| Length = 437 Score = 30.8 bits (68), Expect = 1.7 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 212 DASDGYSLEAQAFLQLLATFNIDLVLDEDELCKIVVAVSRRKQAAELCRSLGFAERIP-G 388 +A DG A+A A F + L++ +C+ + +K +CR+ F + I G Sbjct: 13 EAGDGAHFGAEACRACAAFFRRSVALNKAYVCRAMGTCVIQKNVRCMCRACRFTKCIAVG 72 Query: 389 VIEELIKKHRQIDAVQ 436 + + +++HR++ A Q Sbjct: 73 MRKSAVQRHRELFASQ 88
>GPMI_CAMJR (Q5HW32) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 492 Score = 30.8 bits (68), Expect = 1.7 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 4/142 (2%) Frame = +2 Query: 35 DKNHSVQGQRRSCIVLMEAIAHSLGMKEPGGKHLWSSEIMEQAKAIAEEWKSKIAEVDLD 214 +KN ++Q C H +G+ GG H + + A+ A D Sbjct: 91 EKNENLQKLLAKC-----KRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITD 145 Query: 215 ASDGYSLEAQAFLQLLATFNIDLVLDEDELCKIVVAVSRRKQAAELCRS----LGFAERI 382 D F++ L F +L + LC A+ R K+ + LG A ++ Sbjct: 146 GRDVSPKSGLNFIKDLKGFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKV 205 Query: 383 PGVIEELIKKHRQIDAVQFIQA 448 P ++E L K + + +FI+A Sbjct: 206 PNLLEYLQKSYDENVTDEFIKA 227
>GPMI_CAMJE (Q9PI71) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 492 Score = 30.4 bits (67), Expect = 2.2 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 4/121 (3%) Frame = +2 Query: 98 HSLGMKEPGGKHLWSSEIMEQAKAIAEEWKSKIAEVDLDASDGYSLEAQAFLQLLATFNI 277 H +G+ GG H + + A+ A D D F++ L F Sbjct: 107 HIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKDLKEFCE 166 Query: 278 DLVLDEDELCKIVVAVSRRKQAAELCRS----LGFAERIPGVIEELIKKHRQIDAVQFIQ 445 +L + LC A+ R K+ + LG A ++P ++E L K + + +FI+ Sbjct: 167 NLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDENVTDEFIK 226 Query: 446 A 448 A Sbjct: 227 A 227
>GCP_HELPJ (Q9ZJ27) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)| (Glycoprotease) Length = 340 Score = 30.0 bits (66), Expect = 2.9 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Frame = +2 Query: 14 FPDQLPGDKN--HSVQGQRRSCIVLMEAIAHSLG--MKEPGGKHLWSSEI---MEQAKAI 172 FP L N S G + + + +E AH+L +K+ G H S+ I ++Q K Sbjct: 199 FPIPLKNSPNLAFSFSGLKNAVRLEVEKNAHNLNDEVKQKIGYHFQSAAIEHLIQQTKRY 258 Query: 173 AEEWKSKIAEVDLDASDGYSLEAQAFLQLLATFNIDLVLDEDELC 307 + + KI + AS +L +AF L A F+ +LVL E C Sbjct: 259 FKIKRPKIFGIVGGASQNLALR-KAFEDLCAEFDCELVLAPLEFC 302
>TYRO3_HUMAN (Q06418) Tyrosine-protein kinase receptor TYRO3 precursor (EC| 2.7.10.1) (Tyrosine-protein kinase RSE) (Tyrosine-protein kinase SKY) (Tyrosine-protein kinase DTK) (Protein-tyrosine kinase byk) Length = 890 Score = 29.6 bits (65), Expect = 3.8 Identities = 23/72 (31%), Positives = 33/72 (45%) Frame = -1 Query: 368 NQESDIAQQPACDERRQLQSCIVHLRQAPNQY*KLQEAAGMPVLPMSSHQKHQGQPQLSY 189 + + +A P D R LQSC V + QAP + L A +PV P + + P +Y Sbjct: 238 SSNASVAWMPGADGRALLQSCTVQVTQAPGGWEVL--AVVVPVPPFTCLLRDL-VPATNY 294 Query: 188 SSTLRQLPWLAP 153 S +R L P Sbjct: 295 SLRVRCANALGP 306
>PRP5_DEBHA (Q6BML1) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 913 Score = 29.6 bits (65), Expect = 3.8 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Frame = +2 Query: 122 GGKHLWSSEIMEQAKAIAEEWKSKIAEVDLDASDGYSLEAQAFLQLLATFNIDLVLDEDE 301 GG + +SEI ++ + E D SLE F +LL+T N D+D Sbjct: 529 GGISVVASEITQKVELFENE-------------DDKSLEEAKFSKLLSTLND--YGDKDA 573 Query: 302 LCKIVVAVSRRKQAAELCRSLGFAERIP-----GVIEELIKKH 415 CKI++ V ++ A EL L E+ P G +++ +KH Sbjct: 574 ECKILIFVEKQIAADELLVKL-LTEKYPCLAIHGGKDQIDRKH 615
>CAPZA_KLULA (O74232) F-actin capping protein alpha subunit| Length = 262 Score = 28.9 bits (63), Expect = 6.4 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Frame = +2 Query: 116 EPGGKHLWSSEIMEQAKAIAEEWKSKIA-EVDLDASDGYSLEAQAFLQLLATFNIDLVLD 292 +P K L++ + + + + EE+ S+ A +V D D S F A FN+ + + Sbjct: 75 DPVNKVLFAVDHITREASDIEEYTSEDATQVQSDLYDELSKYVSNFFPDTAVFNVFKIPE 134 Query: 293 EDELCKIVVAVSRRKQAAELCRSLGFAERIPGVIEELIKKHRQIDAVQF 439 D+ ++ VS +K + +E + V + I +DA F Sbjct: 135 SDQYA--IIVVSNKKSLGDFWTGYWLSEYVYDVDGDTISGEVSVDAHYF 181
>RUVA_BACHK (Q6HDA5) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 205 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +2 Query: 275 IDLVLDEDELCKIVVAVSRRKQAAELCRSLGFAER-IPGVIEELIKKHRQID 427 +DL DE+ + + + +A E R+LG+AER + V+ EL+K+ D Sbjct: 139 VDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKESLTTD 190
>RUVA_BACCZ (Q634C3) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 205 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +2 Query: 275 IDLVLDEDELCKIVVAVSRRKQAAELCRSLGFAER-IPGVIEELIKKHRQID 427 +DL DE+ + + + +A E R+LG+AER + V+ EL+K+ D Sbjct: 139 VDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKESLTTD 190
>RUVA_BACC1 (Q730B1) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 205 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +2 Query: 275 IDLVLDEDELCKIVVAVSRRKQAAELCRSLGFAER-IPGVIEELIKKHRQID 427 +DL DE+ + + + +A E R+LG+AER + V+ EL+K+ D Sbjct: 139 VDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKESLTTD 190
>RUVA_BACAN (Q81LG8) Holliday junction DNA ATP-dependent helicase ruvA (EC| 3.6.1.-) Length = 205 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +2 Query: 275 IDLVLDEDELCKIVVAVSRRKQAAELCRSLGFAER-IPGVIEELIKKHRQID 427 +DL DE+ + + + +A E R+LG+AER + V+ EL+K+ D Sbjct: 139 VDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKESLTTD 190
>VG50_BPMB2 (Q857H2) Putative adenosylcobalamin-dependent| ribonucleoside-triphosphate reductase (EC 1.17.4.2) (Gp50) Length = 672 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/60 (31%), Positives = 29/60 (48%) Frame = +2 Query: 35 DKNHSVQGQRRSCIVLMEAIAHSLGMKEPGGKHLWSSEIMEQAKAIAEEWKSKIAEVDLD 214 D+ + + G+R I LME PGG+HLW+S + + A+ + W S E D Sbjct: 44 DERYHLPGERADLIRLMEEFKIL-----PGGRHLWASGV-KNAQHLFNCWVSGWTEKPSD 97
>GPMI_PSEAE (Q9HU53) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 515 Score = 28.5 bits (62), Expect = 8.4 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Frame = +2 Query: 77 VLMEAIAHSLGMKEPGGKHLWSSEIMEQAKAIAEEWKSKI-AEVDLDASDGYSLEAQAFL 253 V + H LG+ PGG H ++ A+ A KI LD D AQ L Sbjct: 107 VAADKAVHILGLLSPGGVHSHEDHLVAMAQMAARRGAGKIYLHAFLDGRDTPPKSAQPSL 166 Query: 254 QLL-ATF 271 + L ATF Sbjct: 167 ERLDATF 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,568,535 Number of Sequences: 219361 Number of extensions: 1206661 Number of successful extensions: 3254 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3180 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3254 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
