ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast27g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYV_SCHPO (O75005) Probable valyl-tRNA synthetase, mitochondrial... 29 3.1
2MTPC4_ARATH (Q8H1G3) Metal tolerance protein C4 (AtMTPc4) 28 6.8
3MRAY_CHLAB (Q5L520) Phospho-N-acetylmuramoyl-pentapeptide-transf... 28 8.9
4CCKN2_XENLA (P50145) Cholecystokinin type 2 precursor [Contains:... 28 8.9

>SYV_SCHPO (O75005) Probable valyl-tRNA synthetase, mitochondrial precursor|
           (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
          Length = 980

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 145 QEESRGRTCLWTTGRTSSTASLMSRSAFPPGSF 47
           Q+ S GR   W TGRT   A   +++AFP  SF
Sbjct: 538 QDRSEGR--YWVTGRTLEQAEEKAKAAFPGKSF 568



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>MTPC4_ARATH (Q8H1G3) Metal tolerance protein C4 (AtMTPc4)|
          Length = 457

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 13  QSKLVSSIQSKRKIQEE-RPIGTSKKPCCWSGLSSIGMSCLCS 138
           Q+ L   + S R+  +   P G SK+   WS +S++G+ CL S
Sbjct: 157 QALLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGS 199



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>MRAY_CHLAB (Q5L520) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 347

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 86  FFDVPIG-LSSWIFLLLWIEETSLDW 12
           FF +P+G LS+W+F  L I  +SL W
Sbjct: 81  FFWLPLGKLSTWLFAFLIISWSSLGW 106



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>CCKN2_XENLA (P50145) Cholecystokinin type 2 precursor [Contains:|
           Cholecystokinin (CCK)]
          Length = 128

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = -3

Query: 147 GKKRAEAGHAY------GRQAGPAARLL*CPDRPFLLDLSFALD*RDELG 16
           G +R+  G+A        R+AGP+ R +  P+RP + D S  ++ RD +G
Sbjct: 64  GDQRSNIGNALVKYLQQSRKAGPSGRYVVLPNRP-IFDQSHRINDRDYMG 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,980,822
Number of Sequences: 219361
Number of extensions: 292665
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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