ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast27c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HTPG_NITWN (Q3SNS6) Chaperone protein htpG (Heat shock protein h... 32 0.63
2CBK1_CANGA (Q6FP74) Serine/threonine-protein kinase CBK1 (EC 2.7... 32 0.82
3LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 30 4.1
4PRMA_CHLTE (Q8KG70) Ribosomal protein L11 methyltransferase (EC ... 29 5.3
5PGRC2_HUMAN (O15173) Membrane-associated progesterone receptor c... 29 5.3
6SCG2_HUMAN (P13521) Secretogranin-2 precursor (Secretogranin II)... 29 5.3
7RECX_PASMU (Q9CK20) Regulatory protein recX 28 9.1

>HTPG_NITWN (Q3SNS6) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 637

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 200 YLRFTDCRKSGSRRRTRTEKVGDPASGTDGSTPRFTISVDSSSRAMA 60
           +LR      + +  R R E + DPA  TD + PR +I++D+  R +A
Sbjct: 38  FLRELISNAADACERLRYEAISDPALLTDETRPRISITIDAERRQLA 84



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>CBK1_CANGA (Q6FP74) Serine/threonine-protein kinase CBK1 (EC 2.7.11.1)|
          Length = 773

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 149 TEKVGDPASGTDGSTPRFTISVDSSSRAMAGRSWVAAWR 33
           T K G P    DGS  R T+ VDS +  M+ R  +  WR
Sbjct: 537 TTKNGAPNDAGDGSNNRQTMIVDSINLTMSNRQQIQTWR 575



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>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 206 RTYLRFTDCRKSGSRRRTRTEKVGDPASGTDGSTPRFTISVDSSSRAM 63
           RT++     RK G+ RRT   KVG  ++ T  +T   T+S DS+  A+
Sbjct: 23  RTFVVPEARRKPGNGRRTSVSKVGSTSTSTT-TTTTTTLSADSNGAAV 69



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>PRMA_CHLTE (Q8KG70) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -2

Query: 119 TDGSTPRFTISVDSSSRAMAGRSWVAAWRARL 24
           T GS PRFT S       MA R+W A W A L
Sbjct: 67  TFGSVPRFTASF------MADRNWNAEWEAHL 92



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>PGRC2_HUMAN (O15173) Membrane-associated progesterone receptor component 2|
           (Progesterone membrane-binding protein) (Steroid
           receptor protein DG6)
          Length = 223

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 143 KVGDPASGTDGSTPRFTISVDSSSRAMAGRSWVAAWRARLVGGGD 9
           K+G   SG++ S    + S   +  A  G  W AA  A L GGG+
Sbjct: 9   KLGTLGSGSESSNDGGSESPGDAGAAAEGGGWAAAALALLTGGGE 53



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>SCG2_HUMAN (P13521) Secretogranin-2 precursor (Secretogranin II) (SgII)|
           (Chromogranin C) [Contains: Secretoneurin (SN)]
          Length = 617

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 235 GVYLATIPVIVLVCGAEVGSLSRDELWRK 321
           G  L+ IP+I L+ GAE  S  R++L +K
Sbjct: 10  GAALSLIPLIFLISGAEAASFQRNQLLQK 38



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>RECX_PASMU (Q9CK20) Regulatory protein recX|
          Length = 164

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +1

Query: 79  LSTEIVNRGVEPSVPDAGSPTFSVRVRRRLPDFLQSVNLKYVRLGYHYLLSHG 237
           +S+ +++   +   PD      +V +R++ P + +  +LK  +  + Y+LSHG
Sbjct: 96  ISSALISEAEQTLAPDWQHHALTV-LRKKFPQYAEITDLKLKQKVWRYMLSHG 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,081,168
Number of Sequences: 219361
Number of extensions: 600752
Number of successful extensions: 2398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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