ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast27b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1341 Score = 73.8 bits (37), Expect = 4e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 357 gccggggcgcaggagacgtgctcgggtgcggtgccggcgccgcccaagcgcggggcctgg 416 ||||||||||||||||||||||||| |||||||||| |||| ||||||||| ||| Sbjct: 64 gccggggcgcaggagacgtgctcggacatggtgccggcggcgccgcggcgcggggcgtgg 123 Query: 417 atgtccattgccagcttcggcggcg 441 ||||| | |||||||||||||||| Sbjct: 124 atgtcgctggccagcttcggcggcg 148
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 4e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 357 gccggggcgcaggagacgtgctcgggtgcggtgccggcgccgcccaagcgcggggcctgg 416 ||||||||||||||||||||||||| |||||||||| |||| ||||||||| ||| Sbjct: 24625769 gccggggcgcaggagacgtgctcggacatggtgccggcggcgccgcggcgcggggcgtgg 24625828 Query: 417 atgtccattgccagcttcggcggcg 441 ||||| | |||||||||||||||| Sbjct: 24625829 atgtcgctggccagcttcggcggcg 24625853 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 317 ggccgcggccatcgccgcggtgc 339 ||||||||||||||||||||||| Sbjct: 32026524 ggccgcggccatcgccgcggtgc 32026546
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1040D09 Length = 148102 Score = 73.8 bits (37), Expect = 4e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 357 gccggggcgcaggagacgtgctcgggtgcggtgccggcgccgcccaagcgcggggcctgg 416 ||||||||||||||||||||||||| |||||||||| |||| ||||||||| ||| Sbjct: 51732 gccggggcgcaggagacgtgctcggacatggtgccggcggcgccgcggcgcggggcgtgg 51791 Query: 417 atgtccattgccagcttcggcggcg 441 ||||| | |||||||||||||||| Sbjct: 51792 atgtcgctggccagcttcggcggcg 51816
>gb|AY105341.1| Zea mays PCO131841 mRNA sequence Length = 1109 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Plus Query: 362 ggcgcaggagacgtgctcgggtgcggtgccggcgccgcccaagcgcggggcctggatgtc 421 ||||||||||||||||||||| | || || |||||||| |||||||| || |||| Sbjct: 65 ggcgcaggagacgtgctcggggaccgtccccgcgccgccgcgccgcggggcgcgggtgtc 124 Query: 422 cattgccagcttcggcggcgc 442 | | ||||||||||||||||| Sbjct: 125 cgtggccagcttcggcggcgc 145
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 328 tcgccgcggtgctgtcggcggcgggcggc 356 ||||||||||||||| ||||||||||||| Sbjct: 6428802 tcgccgcggtgctgttggcggcgggcggc 6428774
>ref|XM_463443.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1725 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 317 ggccgcggccatcgccgcggtgc 339 ||||||||||||||||||||||| Sbjct: 1287 ggccgcggccatcgccgcggtgc 1265
>gb|AC104945.4| Homo sapiens chromosome 8, clone RP11-384L9, complete sequence Length = 181328 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 228 tagtctagatacaatattattct 250 ||||||||||||||||||||||| Sbjct: 59709 tagtctagatacaatattattct 59731
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512C01 Length = 176261 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 317 ggccgcggccatcgccgcggtgc 339 ||||||||||||||||||||||| Sbjct: 68338 ggccgcggccatcgccgcggtgc 68360
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 327 atcgccgcggtgctgtcggcggcgggc 353 |||||||||||||||||| |||||||| Sbjct: 3855364 atcgccgcggtgctgtcgtcggcgggc 3855338 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 ccgcggtgctgtcggcggcgggcg 354 ||||||||||||||| |||||||| Sbjct: 5614820 ccgcggtgctgtcgggggcgggcg 5614843 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 gtggccgcggccatcgccgcggtg 338 ||||||||||||| |||||||||| Sbjct: 2147848 gtggccgcggccagcgccgcggtg 2147871
>dbj|AK109619.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A03, full insert sequence Length = 2768 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 317 ggccgcggccatcgccgcggtgc 339 ||||||||||||||||||||||| Sbjct: 1025 ggccgcggccatcgccgcggtgc 1047
>dbj|AK105550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A10, full insert sequence Length = 1834 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 317 ggccgcggccatcgccgcggtgc 339 ||||||||||||||||||||||| Sbjct: 1295 ggccgcggccatcgccgcggtgc 1273
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 322 cggccatcgccgcggtgctgtcggcgg 348 |||||||||||||||||||| |||||| Sbjct: 3214293 cggccatcgccgcggtgctggcggcgg 3214267
>dbj|AP004388.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1239C7 Length = 165732 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 228 tagtctagatacaatattattct 250 ||||||||||||||||||||||| Sbjct: 8646 tagtctagatacaatattattct 8624
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 317 ggccgcggccatcgccgcggtgc 339 ||||||||||||||||||||||| Sbjct: 123251 ggccgcggccatcgccgcggtgc 123273
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 308 gctggtcgtggccgcggccatcgccgcggt 337 ||||||||||||| ||||||||||| |||| Sbjct: 2953435 gctggtcgtggcctcggccatcgcctcggt 2953406
>ref|NM_185793.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 870 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 gtcggcggcgggcggcgccggg 362 |||||||||||||||||||||| Sbjct: 780 gtcggcggcgggcggcgccggg 759
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 gtcggcggcgggcggcgccggg 362 |||||||||||||||||||||| Sbjct: 9334145 gtcggcggcgggcggcgccggg 9334124 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 ggtgctgtcggcggcgggcggcgc 358 |||||| ||||||||||||||||| Sbjct: 25479678 ggtgctctcggcggcgggcggcgc 25479655
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 301 ggtgcctgctggtcgtggccgcggcc 326 |||||||||| ||||||||||||||| Sbjct: 9470481 ggtgcctgctcgtcgtggccgcggcc 9470456 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 306 ctgctggtcgtggccgcggccatcgccgc 334 ||||| ||||||||||||||||| ||||| Sbjct: 12194808 ctgctcgtcgtggccgcggccatagccgc 12194836
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 301 ggtgcctgctggtcgtggccgcggcc 326 |||||||||| ||||||||||||||| Sbjct: 84042 ggtgcctgctcgtcgtggccgcggcc 84017
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0676F10 Length = 142510 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 gtcggcggcgggcggcgccggg 362 |||||||||||||||||||||| Sbjct: 101486 gtcggcggcgggcggcgccggg 101465
>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0038C05 Length = 152941 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 gtcggcggcgggcggcgccggg 362 |||||||||||||||||||||| Sbjct: 62555 gtcggcggcgggcggcgccggg 62534
>gb|AE005121.1| Halobacterium sp. NRC-1 section 152 of 170 of the complete genome Length = 10208 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 333 gcggtgctgtcggcggcgggcg 354 |||||||||||||||||||||| Sbjct: 1250 gcggtgctgtcggcggcgggcg 1271
>dbj|AK066417.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067F20, full insert sequence Length = 2500 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 gtcggcggcgggcggcgccggg 362 |||||||||||||||||||||| Sbjct: 2002 gtcggcggcgggcggcgccggg 1981
>ref|XM_465190.1| Oryza sativa (japonica cultivar-group), mRNA Length = 702 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 306 ctgctggtcgtggccgcggccatcgccgc 334 ||||| ||||||||||||||||| ||||| Sbjct: 536 ctgctcgtcgtggccgcggccatagccgc 564
>ref|NM_196016.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0076H04.9), mRNA Length = 1137 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggtcgtggccgcggccatcgccgcg 335 |||||| |||||||||||||||||| Sbjct: 711 ggtcgtcgccgcggccatcgccgcg 735
>gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0061D06, complete sequence Length = 172126 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gtcggcggcgggcggcgccgg 361 ||||||||||||||||||||| Sbjct: 82244 gtcggcggcgggcggcgccgg 82224
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gctgtcggcggcgggcggcgc 358 ||||||||||||||||||||| Sbjct: 674181 gctgtcggcggcgggcggcgc 674161
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 cggcggcgggcggcgccgggg 363 ||||||||||||||||||||| Sbjct: 1094344 cggcggcgggcggcgccgggg 1094364
>gb|AC092727.2| Bos taurus clone RP42-351K5, complete sequence Length = 163604 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 tccctttctgccttggcatcc 191 ||||||||||||||||||||| Sbjct: 74049 tccctttctgccttggcatcc 74029
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gctgtcggcggcgggcggcgc 358 ||||||||||||||||||||| Sbjct: 1993269 gctgtcggcggcgggcggcgc 1993249
>gb|AC093093.5| Oryza sativa chromosome 10 BAC OSJNBb0076H04 genomic sequence, complete sequence Length = 141050 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 ggtcgtggccgcggccatcgccgcg 335 |||||| |||||||||||||||||| Sbjct: 46993 ggtcgtcgccgcggccatcgccgcg 46969
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 atcgccgcggtgctgtcggcg 347 ||||||||||||||||||||| Sbjct: 3814544 atcgccgcggtgctgtcggcg 3814524
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 gctgtcggcggcgggcggcgc 358 ||||||||||||||||||||| Sbjct: 808470 gctgtcggcggcgggcggcgc 808490
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 gtcggcggcgggcggcgccgg 361 ||||||||||||||||||||| Sbjct: 9667433 gtcggcggcgggcggcgccgg 9667453
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggtcgtggccgcggccatcgccgcg 335 |||||| |||||||||||||||||| Sbjct: 10511968 ggtcgtcgccgcggccatcgccgcg 10511992
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 309 ctggtcgtggccgcggccatcgccg 333 ||||||||||||||| ||||||||| Sbjct: 2366966 ctggtcgtggccgcgcccatcgccg 2366942 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 cgggtgcggtgccggcgccg 398 |||||||||||||||||||| Sbjct: 4708433 cgggtgcggtgccggcgccg 4708414
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 tggccgcggccatcgccgcgg 336 ||||||||||||||||||||| Sbjct: 1179685 tggccgcggccatcgccgcgg 1179705
>gb|AE005124.1| Halobacterium sp. NRC-1 section 155 of 170 of the complete genome Length = 12016 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 320 cgcggccatcgccgcggtgctgtcggcggcggg 352 ||||| |||||| |||||| ||||||||||||| Sbjct: 9735 cgcggacatcgcggcggtggtgtcggcggcggg 9703
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_D08 Length = 88854 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 306 ctgctggtcgtggccgcggccatcgccgc 334 ||||| ||||||||||||||||| ||||| Sbjct: 18269 ctgctcgtcgtggccgcggccatagccgc 18297
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 gccgcggccatcgccgcggtg 338 ||||||||||||||||||||| Sbjct: 126073 gccgcggccatcgccgcggtg 126053
>gb|U48457.1|HUMRYR09 Human skeletal muscle ryanodine receptor gene (RYR1), exons 17 and 18 Length = 1474 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 tctgccttggcatccactcct 197 ||||||||||||||||||||| Sbjct: 614 tctgccttggcatccactcct 634
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 ggtcgtggccgcggccatcgccgcg 335 |||||| |||||||||||||||||| Sbjct: 10518007 ggtcgtcgccgcggccatcgccgcg 10518031
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 gtcggcggcgggcggcgccgg 361 ||||||||||||||||||||| Sbjct: 9739130 gtcggcggcgggcggcgccgg 9739150
>gb|M91455.1|HUMRYR1 Human ryanodine receptor (RYR1) gene, exons 17 and 18 Length = 995 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 tctgccttggcatccactcct 197 ||||||||||||||||||||| Sbjct: 481 tctgccttggcatccactcct 501
>ref|XM_470579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 582 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tcggcggcgggcggcgccgg 361 |||||||||||||||||||| Sbjct: 413 tcggcggcgggcggcgccgg 394
>gb|AY022063.1| Oryza sativa microsatellite MRG4388 containing (TC)X14, closest to marker R2778, genomic sequence Length = 228 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 309 ctggtcgtggccgcggccatcgccgcgg 336 ||||||||||||| |||| ||||||||| Sbjct: 68 ctggtcgtggccgtggccctcgccgcgg 41
>gb|AY022056.1| Oryza sativa microsatellite MRG4381 containing (TC)X14, closest to marker C875, genomic sequence Length = 228 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 309 ctggtcgtggccgcggccatcgccgcgg 336 ||||||||||||| |||| ||||||||| Sbjct: 68 ctggtcgtggccgtggccctcgccgcgg 41
>ref|XM_368651.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00593.4) partial mRNA Length = 2160 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 cattgccagcttcggcggcg 441 |||||||||||||||||||| Sbjct: 1002 cattgccagcttcggcggcg 1021
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcgccgcggtgctgtcggcggcgg 351 |||||||||||| ||||||||||| Sbjct: 2813846 tcgccgcggtgccgtcggcggcgg 2813823
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 309 ctggtcgtggccgcggccatcgccgcgg 336 ||||||||||||| |||| ||||||||| Sbjct: 7096582 ctggtcgtggccgtggccctcgccgcgg 7096555 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tcggcggcgggcggcgccgg 361 |||||||||||||||||||| Sbjct: 4882061 tcggcggcgggcggcgccgg 4882042
>gb|AC104129.4| Homo sapiens BAC clone RP13-596B14 from 7, complete sequence Length = 65189 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tggcatccactccttgctgg 203 |||||||||||||||||||| Sbjct: 17187 tggcatccactccttgctgg 17168
>gb|AC117656.13| Mus musculus chromosome 14, clone RP23-298L3, complete sequence Length = 228361 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cctttctgccttggcatcca 192 |||||||||||||||||||| Sbjct: 163856 cctttctgccttggcatcca 163837
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tcggcggcgggcggcgccgg 361 |||||||||||||||||||| Sbjct: 113486 tcggcggcgggcggcgccgg 113505
>ref|XM_859056.1| PREDICTED: Canis familiaris hypothetical protein LOC609325 (LOC609325), mRNA Length = 1437 Score = 40.1 bits (20), Expect = 6.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 307 tgctggtcgtggccgcggccatcgccgcggtgctgt 342 ||||||| | ||| ||||||| |||||||||||||| Sbjct: 686 tgctggtggcggcggcggccaacgccgcggtgctgt 721
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 tggccgcggccatcgccgcg 335 |||||||||||||||||||| Sbjct: 4617321 tggccgcggccatcgccgcg 4617302 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgtcggcggcgggcggcgcc 359 |||||||||||||||||||| Sbjct: 948664 tgtcggcggcgggcggcgcc 948683
>emb|AL034425.9|HS542H21 Human DNA sequence from clone RP4-542H21 on chromosome 20p11.21-12.1 Contains part of the SLC24A3 gene for solute carrier family 24 (sodium/potassium/calcium exchanger) member 3, complete sequence Length = 116732 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gtttccctttctgccttggc 187 |||||||||||||||||||| Sbjct: 5096 gtttccctttctgccttggc 5115
>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome Length = 154746 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 390 ccggcgccgcccaagcgcggggcctgga 417 |||||||| ||||||||||| ||||||| Sbjct: 110662 ccggcgccccccaagcgcggagcctgga 110635
>emb|Z68205.1|NGFOLIC N.gonorrhoeae folI, folC and tpc genes Length = 3140 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 cggcaacttttccggcggatttggtttc 172 ||||||||||| |||||| ||||||||| Sbjct: 2583 cggcaactttttcggcggttttggtttc 2556
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gtggccgcggccatcgccgcggtg 338 |||||||||||||| ||||||||| Sbjct: 318823 gtggccgcggccatggccgcggtg 318800 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tcgccgcggtgctgtcggcg 347 |||||||||||||||||||| Sbjct: 317119 tcgccgcggtgctgtcggcg 317138
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gtggccgcggccatcgccgcggtg 338 |||||||||||||| ||||||||| Sbjct: 256507 gtggccgcggccatggccgcggtg 256484 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tcgccgcggtgctgtcggcg 347 |||||||||||||||||||| Sbjct: 254803 tcgccgcggtgctgtcggcg 254822
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gtggccgcggccatcgccgcggtg 338 |||||||||||||| ||||||||| Sbjct: 180157 gtggccgcggccatggccgcggtg 180134 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tcgccgcggtgctgtcggcg 347 |||||||||||||||||||| Sbjct: 178528 tcgccgcggtgctgtcggcg 178547
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cgtggccgcggccatcgccg 333 |||||||||||||||||||| Sbjct: 333928 cgtggccgcggccatcgccg 333909
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 ggcggcgggcggcgccgggg 363 |||||||||||||||||||| Sbjct: 266531 ggcggcgggcggcgccgggg 266550
>emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 3/7 Length = 311321 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 cggcaacttttccggcggatttggtttc 172 ||||||||||| |||||| ||||||||| Sbjct: 177758 cggcaactttttcggcggttttggtttc 177785
>emb|AJ495769.1|HVU495769 Hordeum vulgare mRNA for putative immunophilin Length = 835 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 tgcctgctggtcgtggccgc 322 |||||||||||||||||||| Sbjct: 113 tgcctgctggtcgtggccgc 132
>gb|AC090163.10| Homo sapiens chromosome 11, clone RP11-706A13, complete sequence Length = 194642 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtttccctttctgccttggc 187 |||||||||||||||||||| Sbjct: 143245 gtttccctttctgccttggc 143226
>emb|AJ719890.1| Gallus gallus mRNA for hypothetical protein, clone 7o7 Length = 2411 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 gctcgggtgcggtgccggcgccgc 399 ||||||| |||||||||||||||| Sbjct: 10 gctcgggggcggtgccggcgccgc 33
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtggccgcggccatcgccgc 334 |||||||||||||||||||| Sbjct: 3516139 gtggccgcggccatcgccgc 3516158
>gb|AC103854.2| Homo sapiens chromosome 11, clone RP11-104M24, complete sequence Length = 152529 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtttccctttctgccttggc 187 |||||||||||||||||||| Sbjct: 64575 gtttccctttctgccttggc 64556
>gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, complete sequence Length = 194619 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atacaatattattctacaaa 255 |||||||||||||||||||| Sbjct: 173481 atacaatattattctacaaa 173500
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 tcgccgcggtgctgtcggcggcgg 351 |||||||||||||||| ||||||| Sbjct: 2244554 tcgccgcggtgctgtccgcggcgg 2244577
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 cggcaacttttccggcggatttggtttc 172 ||||||||||| |||||| ||||||||| Sbjct: 718904 cggcaactttttcggcggttttggtttc 718931
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 309 ctggtcgtggccgcggccatcgccgcgg 336 ||||||||||||| |||| ||||||||| Sbjct: 7094477 ctggtcgtggccgtggccctcgccgcgg 7094450 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tcggcggcgggcggcgccgg 361 |||||||||||||||||||| Sbjct: 4881276 tcggcggcgggcggcgccgg 4881257
>gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, complete sequence Length = 158746 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 tgtcggcggcgggcggcgccgggg 363 ||||||||| |||||||||||||| Sbjct: 9828 tgtcggcggtgggcggcgccgggg 9851
>gb|AC026714.5|AC026714 Homo sapiens chromosome 5 clone CTD-2132P24, complete sequence Length = 89153 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atacaatattattctacaaa 255 |||||||||||||||||||| Sbjct: 15310 atacaatattattctacaaa 15329
>gb|AE004719.1| Pseudomonas aeruginosa PAO1, section 280 of 529 of the complete genome Length = 10145 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ggcggcgggcggcgccgggg 363 |||||||||||||||||||| Sbjct: 3529 ggcggcgggcggcgccgggg 3510
>gb|AF545580.1|AF545580S1 Micromonospora megalomicea subsp. nigra UnbL (unbL), PksE (pksE), and TebC (tebC) genes, complete cds Length = 7297 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 gcgggcggcgccggggcgcaggag 371 |||||||| ||||||||||||||| Sbjct: 679 gcgggcggtgccggggcgcaggag 702
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence Length = 136098 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 309 ctggtcgtggccgcggccatcgccgcgg 336 ||||||||||||| |||| ||||||||| Sbjct: 97756 ctggtcgtggccgtggccctcgccgcgg 97783
>dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19 Length = 164483 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 ggtgctgtcggcggcgggcggcgc 358 |||||| ||||||||||||||||| Sbjct: 153687 ggtgctctcggcggcgggcggcgc 153664
>dbj|AK104936.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G10, full insert sequence Length = 1202 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 309 ctggtcgtggccgcggccatcgccgcgg 336 ||||||||||||| |||| ||||||||| Sbjct: 145 ctggtcgtggccgtggccctcgccgcgg 172
>dbj|AK068353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142D12, full insert sequence Length = 1201 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 309 ctggtcgtggccgcggccatcgccgcgg 336 ||||||||||||| |||| ||||||||| Sbjct: 146 ctggtcgtggccgtggccctcgccgcgg 173
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ggtgctgtcggcggcgggcg 354 |||||||||||||||||||| Sbjct: 1622481 ggtgctgtcggcggcgggcg 1622500
>dbj|AK062839.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H03, full insert sequence Length = 750 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tcggcggcgggcggcgccgg 361 |||||||||||||||||||| Sbjct: 465 tcggcggcgggcggcgccgg 446
>tpe|BN000568.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx39 gene for class III peroxidase 39 precursor, exons 1-4 Length = 2005 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 309 ctggtcgtggccgcggccatcgccgcgg 336 ||||||||||||| |||| ||||||||| Sbjct: 34 ctggtcgtggccgtggccctcgccgcgg 61
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 cggcaacttttccggcggatttggtttc 172 ||||||||||| |||||| ||||||||| Sbjct: 264527 cggcaactttttcggcggttttggtttc 264554
>dbj|AP000721.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-91L24, complete sequence Length = 124636 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tccctttctgccttggcatc 190 |||||||||||||||||||| Sbjct: 48138 tccctttctgccttggcatc 48119
>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence Length = 53591 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 tgctgtcggcggcgggcggcgccg 360 |||||| ||||||||||||||||| Sbjct: 46300 tgctgtgggcggcgggcggcgccg 46277
>gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis gene cluster, complete sequence Length = 36905 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 335 ggtgctgtcggcggcgggcggcgccggg 362 ||||| ||||||||||| |||||||||| Sbjct: 21389 ggtgccgtcggcggcggccggcgccggg 21362
>gb|M77374.1|BPEVRG6A Bordetella pertussis Vrg-6 (vrg-6) gene, complete cds Length = 829 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gtggccgcggccatcgccgcggtg 338 |||||||||||||| ||||||||| Sbjct: 610 gtggccgcggccatggccgcggtg 587 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,812,373 Number of Sequences: 3902068 Number of extensions: 2812373 Number of successful extensions: 72418 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69112 Number of HSP's gapped (non-prelim): 3302 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
