ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast27a12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 293 bits (148), Expect = 2e-76 Identities = 334/396 (84%) Strand = Plus / Minus Query: 26 gcgatggagtccctgggcgtgctgctgctgcaccccatgaacgcctacctggagcaggag 85 |||||||| |||||||||||||||||| || || |||||||||||||||||||||||| Sbjct: 7102013 gcgatggattccctgggcgtgctgctggtggcgccgatgaacgcctacctggagcaggag 7101954 Query: 86 ctcgaccgccgcttccgcctcttccgcttgtgggactcccctcccgacggccgcgccgag 145 || ||||| || | ||||||||||||| | ||||| ||||| ||||| |||||| ||| Sbjct: 7101953 ctggaccggcggtgccgcctcttccgcctctgggagtcccccgccgaccgccgcgacgac 7101894 Query: 146 ttcctccgcgccaacgcctccgccatccgcgccgtcgtcggcaacgccggctacaacgac 205 | |||||||||| |||||||| ||||||||||||||||| | ||||| | | || | Sbjct: 7101893 tacctccgcgcccacgcctcctccatccgcgccgtcgtcccctacgccctccagggcgtc 7101834 Query: 206 gacgccgcgctcatcgacgcgctgccgtcgctcgagatcgtcgcgtccttctccgtgggg 265 |||||||| | |||||||| || || || |||||||||||| | ||||||||||| || Sbjct: 7101833 gacgccgccatgatcgacgccctcccctccctcgagatcgtctcctccttctccgtcggc 7101774 Query: 266 atcgaccgcgtcgacctccccaagtgccgcgagcgcgggatccgcgtcaccaacacccac 325 |||||||||||||||||| | ||||| | |||||| |||||||||||||||||| | Sbjct: 7101773 atcgaccgcgtcgacctcgacgcgtgcctccgccgcggggtccgcgtcaccaacaccccc 7101714 Query: 326 gacgtcctcaccgacgacgtcgccgacctcgccgtcggcctcaccatcgccgcgcatagg 385 ||||||||||||||||||||||||||||||||||| || ||| |||||||||||| | Sbjct: 7101713 gacgtcctcaccgacgacgtcgccgacctcgccgtggggctcgccatcgccgcgctccgc 7101654 Query: 386 aagatcccgcagaccgaccgctacgtgcgcgccggc 421 |||||||| ||| ||||||||||||| ||||||||| Sbjct: 7101653 aagatcccccaggccgaccgctacgtccgcgccggc 7101618
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 293 bits (148), Expect = 2e-76 Identities = 334/396 (84%) Strand = Plus / Minus Query: 26 gcgatggagtccctgggcgtgctgctgctgcaccccatgaacgcctacctggagcaggag 85 |||||||| |||||||||||||||||| || || |||||||||||||||||||||||| Sbjct: 89593 gcgatggattccctgggcgtgctgctggtggcgccgatgaacgcctacctggagcaggag 89534 Query: 86 ctcgaccgccgcttccgcctcttccgcttgtgggactcccctcccgacggccgcgccgag 145 || ||||| || | ||||||||||||| | ||||| ||||| ||||| |||||| ||| Sbjct: 89533 ctggaccggcggtgccgcctcttccgcctctgggagtcccccgccgaccgccgcgacgac 89474 Query: 146 ttcctccgcgccaacgcctccgccatccgcgccgtcgtcggcaacgccggctacaacgac 205 | |||||||||| |||||||| ||||||||||||||||| | ||||| | | || | Sbjct: 89473 tacctccgcgcccacgcctcctccatccgcgccgtcgtcccctacgccctccagggcgtc 89414 Query: 206 gacgccgcgctcatcgacgcgctgccgtcgctcgagatcgtcgcgtccttctccgtgggg 265 |||||||| | |||||||| || || || |||||||||||| | ||||||||||| || Sbjct: 89413 gacgccgccatgatcgacgccctcccctccctcgagatcgtctcctccttctccgtcggc 89354 Query: 266 atcgaccgcgtcgacctccccaagtgccgcgagcgcgggatccgcgtcaccaacacccac 325 |||||||||||||||||| | ||||| | |||||| |||||||||||||||||| | Sbjct: 89353 atcgaccgcgtcgacctcgacgcgtgcctccgccgcggggtccgcgtcaccaacaccccc 89294 Query: 326 gacgtcctcaccgacgacgtcgccgacctcgccgtcggcctcaccatcgccgcgcatagg 385 ||||||||||||||||||||||||||||||||||| || ||| |||||||||||| | Sbjct: 89293 gacgtcctcaccgacgacgtcgccgacctcgccgtggggctcgccatcgccgcgctccgc 89234 Query: 386 aagatcccgcagaccgaccgctacgtgcgcgccggc 421 |||||||| ||| ||||||||||||| ||||||||| Sbjct: 89233 aagatcccccaggccgaccgctacgtccgcgccggc 89198
>dbj|AK101390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036K01, full insert sequence Length = 1332 Score = 293 bits (148), Expect = 2e-76 Identities = 334/396 (84%) Strand = Plus / Plus Query: 26 gcgatggagtccctgggcgtgctgctgctgcaccccatgaacgcctacctggagcaggag 85 |||||||| |||||||||||||||||| || || |||||||||||||||||||||||| Sbjct: 175 gcgatggattccctgggcgtgctgctggtggcgccgatgaacgcctacctggagcaggag 234 Query: 86 ctcgaccgccgcttccgcctcttccgcttgtgggactcccctcccgacggccgcgccgag 145 || ||||| || | ||||||||||||| | ||||| ||||| ||||| |||||| ||| Sbjct: 235 ctggaccggcggtgccgcctcttccgcctctgggagtcccccgccgaccgccgcgacgac 294 Query: 146 ttcctccgcgccaacgcctccgccatccgcgccgtcgtcggcaacgccggctacaacgac 205 | |||||||||| |||||||| ||||||||||||||||| | ||||| | | || | Sbjct: 295 tacctccgcgcccacgcctcctccatccgcgccgtcgtcccctacgccctccagggcgtc 354 Query: 206 gacgccgcgctcatcgacgcgctgccgtcgctcgagatcgtcgcgtccttctccgtgggg 265 |||||||| | |||||||| || || || |||||||||||| | ||||||||||| || Sbjct: 355 gacgccgccatgatcgacgccctcccctccctcgagatcgtctcctccttctccgtcggc 414 Query: 266 atcgaccgcgtcgacctccccaagtgccgcgagcgcgggatccgcgtcaccaacacccac 325 |||||||||||||||||| | ||||| | |||||| |||||||||||||||||| | Sbjct: 415 atcgaccgcgtcgacctcgacgcgtgcctccgccgcggggtccgcgtcaccaacaccccc 474 Query: 326 gacgtcctcaccgacgacgtcgccgacctcgccgtcggcctcaccatcgccgcgcatagg 385 ||||||||||||||||||||||||||||||||||| || ||| |||||||||||| | Sbjct: 475 gacgtcctcaccgacgacgtcgccgacctcgccgtggggctcgccatcgccgcgctccgc 534 Query: 386 aagatcccgcagaccgaccgctacgtgcgcgccggc 421 |||||||| ||| ||||||||||||| ||||||||| Sbjct: 535 aagatcccccaggccgaccgctacgtccgcgccggc 570
>dbj|AK069655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031I17, full insert sequence Length = 1397 Score = 293 bits (148), Expect = 2e-76 Identities = 334/396 (84%) Strand = Plus / Plus Query: 26 gcgatggagtccctgggcgtgctgctgctgcaccccatgaacgcctacctggagcaggag 85 |||||||| |||||||||||||||||| || || |||||||||||||||||||||||| Sbjct: 256 gcgatggattccctgggcgtgctgctggtggcgccgatgaacgcctacctggagcaggag 315 Query: 86 ctcgaccgccgcttccgcctcttccgcttgtgggactcccctcccgacggccgcgccgag 145 || ||||| || | ||||||||||||| | ||||| ||||| ||||| |||||| ||| Sbjct: 316 ctggaccggcggtgccgcctcttccgcctctgggagtcccccgccgaccgccgcgacgac 375 Query: 146 ttcctccgcgccaacgcctccgccatccgcgccgtcgtcggcaacgccggctacaacgac 205 | |||||||||| |||||||| ||||||||||||||||| | ||||| | | || | Sbjct: 376 tacctccgcgcccacgcctcctccatccgcgccgtcgtcccctacgccctccagggcgtc 435 Query: 206 gacgccgcgctcatcgacgcgctgccgtcgctcgagatcgtcgcgtccttctccgtgggg 265 |||||||| | |||||||| || || || |||||||||||| | ||||||||||| || Sbjct: 436 gacgccgccatgatcgacgccctcccctccctcgagatcgtctcctccttctccgtcggc 495 Query: 266 atcgaccgcgtcgacctccccaagtgccgcgagcgcgggatccgcgtcaccaacacccac 325 |||||||||||||||||| | ||||| | |||||| |||||||||||||||||| | Sbjct: 496 atcgaccgcgtcgacctcgacgcgtgcctccgccgcggggtccgcgtcaccaacaccccc 555 Query: 326 gacgtcctcaccgacgacgtcgccgacctcgccgtcggcctcaccatcgccgcgcatagg 385 ||||||||||||||||||||||||||||||||||| || ||| |||||||||||| | Sbjct: 556 gacgtcctcaccgacgacgtcgccgacctcgccgtggggctcgccatcgccgcgctccgc 615 Query: 386 aagatcccgcagaccgaccgctacgtgcgcgccggc 421 |||||||| ||| ||||||||||||| ||||||||| Sbjct: 616 aagatcccccaggccgaccgctacgtccgcgccggc 651
>dbj|AK059778.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B03, full insert sequence Length = 1275 Score = 293 bits (148), Expect = 2e-76 Identities = 334/396 (84%) Strand = Plus / Plus Query: 26 gcgatggagtccctgggcgtgctgctgctgcaccccatgaacgcctacctggagcaggag 85 |||||||| |||||||||||||||||| || || |||||||||||||||||||||||| Sbjct: 132 gcgatggattccctgggcgtgctgctggtggcgccgatgaacgcctacctggagcaggag 191 Query: 86 ctcgaccgccgcttccgcctcttccgcttgtgggactcccctcccgacggccgcgccgag 145 || ||||| || | ||||||||||||| | ||||| ||||| ||||| |||||| ||| Sbjct: 192 ctggaccggcggtgccgcctcttccgcctctgggagtcccccgccgaccgccgcgacgac 251 Query: 146 ttcctccgcgccaacgcctccgccatccgcgccgtcgtcggcaacgccggctacaacgac 205 | |||||||||| |||||||| ||||||||||||||||| | ||||| | | || | Sbjct: 252 tacctccgcgcccacgcctcctccatccgcgccgtcgtcccctacgccctccagggcgtc 311 Query: 206 gacgccgcgctcatcgacgcgctgccgtcgctcgagatcgtcgcgtccttctccgtgggg 265 |||||||| | |||||||| || || || |||||||||||| | ||||||||||| || Sbjct: 312 gacgccgccatgatcgacgccctcccctccctcgagatcgtctcctccttctccgtcggc 371 Query: 266 atcgaccgcgtcgacctccccaagtgccgcgagcgcgggatccgcgtcaccaacacccac 325 |||||||||||||||||| | ||||| | |||||| |||||||||||||||||| | Sbjct: 372 atcgaccgcgtcgacctcgacgcgtgcctccgccgcggggtccgcgtcaccaacaccccc 431 Query: 326 gacgtcctcaccgacgacgtcgccgacctcgccgtcggcctcaccatcgccgcgcatagg 385 ||||||||||||||||||||||||||||||||||| || ||| |||||||||||| | Sbjct: 432 gacgtcctcaccgacgacgtcgccgacctcgccgtggggctcgccatcgccgcgctccgc 491 Query: 386 aagatcccgcagaccgaccgctacgtgcgcgccggc 421 |||||||| ||| ||||||||||||| ||||||||| Sbjct: 492 aagatcccccaggccgaccgctacgtccgcgccggc 527
>ref|NM_188589.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 951 Score = 287 bits (145), Expect = 1e-74 Identities = 331/393 (84%) Strand = Plus / Plus Query: 29 atggagtccctgggcgtgctgctgctgcaccccatgaacgcctacctggagcaggagctc 88 ||||| |||||||||||||||||| || || |||||||||||||||||||||||||| Sbjct: 1 atggattccctgggcgtgctgctggtggcgccgatgaacgcctacctggagcaggagctg 60 Query: 89 gaccgccgcttccgcctcttccgcttgtgggactcccctcccgacggccgcgccgagttc 148 ||||| || | ||||||||||||| | ||||| ||||| ||||| |||||| ||| | | Sbjct: 61 gaccggcggtgccgcctcttccgcctctgggagtcccccgccgaccgccgcgacgactac 120 Query: 149 ctccgcgccaacgcctccgccatccgcgccgtcgtcggcaacgccggctacaacgacgac 208 ||||||||| |||||||| ||||||||||||||||| | ||||| | | || |||| Sbjct: 121 ctccgcgcccacgcctcctccatccgcgccgtcgtcccctacgccctccagggcgtcgac 180 Query: 209 gccgcgctcatcgacgcgctgccgtcgctcgagatcgtcgcgtccttctccgtggggatc 268 ||||| | |||||||| || || || |||||||||||| | ||||||||||| || ||| Sbjct: 181 gccgccatgatcgacgccctcccctccctcgagatcgtctcctccttctccgtcggcatc 240 Query: 269 gaccgcgtcgacctccccaagtgccgcgagcgcgggatccgcgtcaccaacacccacgac 328 ||||||||||||||| | ||||| | |||||| |||||||||||||||||| |||| Sbjct: 241 gaccgcgtcgacctcgacgcgtgcctccgccgcggggtccgcgtcaccaacacccccgac 300 Query: 329 gtcctcaccgacgacgtcgccgacctcgccgtcggcctcaccatcgccgcgcataggaag 388 |||||||||||||||||||||||||||||||| || ||| |||||||||||| | ||| Sbjct: 301 gtcctcaccgacgacgtcgccgacctcgccgtggggctcgccatcgccgcgctccgcaag 360 Query: 389 atcccgcagaccgaccgctacgtgcgcgccggc 421 ||||| ||| ||||||||||||| ||||||||| Sbjct: 361 atcccccaggccgaccgctacgtccgcgccggc 393
>ref|NM_106636.2| Arabidopsis thaliana oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor AT1G79870 mRNA, complete cds Length = 1166 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 302 gggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtc 361 |||||||||||||||||||||| |||||| |||||||| |||||||| || |||||| || Sbjct: 316 gggatccgcgtcaccaacacccccgacgttctcaccgaagacgtcgcagatctcgccatc 375 Query: 362 gg 363 || Sbjct: 376 gg 377
>gb|AY113022.1| Arabidopsis thaliana At1g79870/F19K16_17 mRNA, complete cds Length = 942 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 302 gggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtc 361 |||||||||||||||||||||| |||||| |||||||| |||||||| || |||||| || Sbjct: 268 gggatccgcgtcaccaacacccccgacgttctcaccgaagacgtcgcagatctcgccatc 327 Query: 362 gg 363 || Sbjct: 328 gg 329
>gb|AY069901.1| Arabidopsis thaliana At1g79870/F19K16_17 mRNA, complete cds Length = 1117 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 302 gggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtc 361 |||||||||||||||||||||| |||||| |||||||| |||||||| || |||||| || Sbjct: 312 gggatccgcgtcaccaacacccccgacgttctcaccgaagacgtcgcagatctcgccatc 371 Query: 362 gg 363 || Sbjct: 372 gg 373
>emb|BX814352.1|CNS0AC12 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB69ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 998 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 302 gggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtc 361 |||||||||||||||||||||| |||||| |||||||| |||||||| || |||||| || Sbjct: 303 gggatccgcgtcaccaacacccccgacgttctcaccgaagacgtcgcagaactcgccatc 362 Query: 362 gg 363 || Sbjct: 363 gg 364
>emb|BX818677.1|CNS0AAYO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL91ZC07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 980 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 302 gggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtc 361 |||||||||||||||||||||| |||||| |||||||| |||||||| || |||||| || Sbjct: 291 gggatccgcgtcaccaacacccccgacgttctcaccgaagacgtcgcagatctcgccatc 350 Query: 362 gg 363 || Sbjct: 351 gg 352
>emb|BX841863.1|CNS09Y43 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZC10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1149 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 302 gggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtc 361 |||||||||||||||||||||| |||||| |||||||| |||||||| || |||||| || Sbjct: 305 gggatccgcgtcaccaacacccccgacgttctcaccgaagacgtcgcagatctcgccatc 364 Query: 362 gg 363 || Sbjct: 365 gg 366
>gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence Length = 111301 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 302 gggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtc 361 |||||||||||||||||||||| |||||| |||||||| |||||||| || |||||| || Sbjct: 59119 gggatccgcgtcaccaacacccccgacgttctcaccgaagacgtcgcagatctcgccatc 59060 Query: 362 gg 363 || Sbjct: 59059 gg 59058
>gb|AY088166.1| Arabidopsis thaliana clone 42333 mRNA, complete sequence Length = 1076 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 302 gggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtc 361 |||||||||||||||||||||| |||||| |||||||| |||||||| || |||||| || Sbjct: 316 gggatccgcgtcaccaacacccccgacgttctcaccgaagacgtcgcagatctcgccatc 375 Query: 362 gg 363 || Sbjct: 376 gg 377
>gb|AE007220.1| Sinorhizobium meliloti 1021 plasmid pSymA section 26 of 121 of the complete plasmid sequence Length = 11119 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 296 gagcgcgggatccgcgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctc 355 ||||| || |||||||||||||| || | ||||||| | ||| | ||||||||||||||| Sbjct: 328 gagcgtggcatccgcgtcaccaatacgcccgacgtcttgaccaaggacgtcgccgacctc 387 Query: 356 gccgtcg 362 | ||||| Sbjct: 388 ggcgtcg 394
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 cgcgccgtcgtcggcaacgccgg 195 ||||||||||||||||||||||| Sbjct: 656677 cgcgccgtcgtcggcaacgccgg 656699
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 202 cgacgacgccgcgctcatcgacgcgct 228 |||||||| |||||||||||||||||| Sbjct: 1762770 cgacgacgacgcgctcatcgacgcgct 1762796 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ccgcgccgtcgtcggcaacg 191 |||||||||||||||||||| Sbjct: 1834421 ccgcgccgtcgtcggcaacg 1834402
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Minus Query: 78 agcaggagctcgaccgccgcttccgcc 104 |||||||| |||||||||||||||||| Sbjct: 3481695 agcaggaggtcgaccgccgcttccgcc 3481669
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 337 cgacgacgtcgccgacctcgccgtcg 362 ||||| |||||||||||||||||||| Sbjct: 438577 cgacgccgtcgccgacctcgccgtcg 438552
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 13 cccggccgccatggcgatggag 34 |||||||||||||||||||||| Sbjct: 4373821 cccggccgccatggcgatggag 4373800 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cggcctcaccatcgccgcgc 380 |||||||||||||||||||| Sbjct: 3742206 cggcctcaccatcgccgcgc 3742225
>gb|AF331073.1|AF331073 Amycolatopsis mediterranei U32 nitrate assimilatory gene cluster, complete sequence Length = 14815 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 gacgtcgccgacctcgccgtcg 362 |||||||||||||||||||||| Sbjct: 14289 gacgtcgccgacctcgccgtcg 14268
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 138 gcgccgagttcctccgcgccaacgcc 163 ||||||||||| |||||||||||||| Sbjct: 6433061 gcgccgagttcgtccgcgccaacgcc 6433036 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 tcgccgacctcgccgtcggcc 365 ||||||||||||||||||||| Sbjct: 1190065 tcgccgacctcgccgtcggcc 1190045 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 ctggagcaggagctcgaccgccgc 97 |||||||||||||||||| ||||| Sbjct: 4401989 ctggagcaggagctcgacagccgc 4401966 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cgacgacgtcgccgacctcg 356 |||||||||||||||||||| Sbjct: 739046 cgacgacgtcgccgacctcg 739065 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Minus Query: 310 cgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgc 357 |||||||||||| | |||||| || ||||| || ||||||||| |||| Sbjct: 81839 cgtcaccaacacgcccgacgtgctgaccgaggaggtcgccgacgtcgc 81792
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 356 gccgtcggcctcaccatcgccgcgca 381 ||||||||||||||||| |||||||| Sbjct: 4500651 gccgtcggcctcaccatggccgcgca 4500676 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 155 gccaacgcctccgccatccgcgccg 179 ||||||||| ||||||||||||||| Sbjct: 1342018 gccaacgcccccgccatccgcgccg 1342042
>gb|AF079762.1|AF079762 Streptomyces venezuelae desosamine biosynthetic gene cluster, complete sequence Length = 12441 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 cgacggccgcgccgagttcctc 151 |||||||||||||||||||||| Sbjct: 3211 cgacggccgcgccgagttcctc 3190
>dbj|AB081073.1| Streptomyces kasugaensis pyrD, pyrF, mihF, gmk, rpoZ, dfp, genes for probable dihydroorotate dehydrogenase, probable orotidine 5'-phosphate decarboxylase, probable mIHF protein, probable guanylate kinase, RNA polymerase omega subunit, propable flavoprotein, partial and complete cds Length = 3911 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 337 cgacgacgtcgccgacctcgccgtcg 362 ||||| |||||||||||||||||||| Sbjct: 623 cgacgccgtcgccgacctcgccgtcg 648
>ref|XM_474146.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1890 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctcaccatcgcc 376 ||||||||| || |||||||||||||||| Sbjct: 206 ccgacctcgtcgccggcctcaccatcgcc 234
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 cgcagaccgaccgctacgtgc 413 ||||||||||||||||||||| Sbjct: 1431707 cgcagaccgaccgctacgtgc 1431687 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 325 cgacgtcctcaccgacgacgtcgccgac 352 |||||| || |||||||||||||||||| Sbjct: 1484275 cgacgtgctgaccgacgacgtcgccgac 1484248
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 ccgaccgctacgtgcgcgccg 419 ||||||||||||||||||||| Sbjct: 148756 ccgaccgctacgtgcgcgccg 148776
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Plus Query: 310 cgtcaccaacacccacgacgtcctcaccgacgacgtcgccgacctcgccgtcggcct 366 |||||||||||| | ||||||||| ||||| || ||||| ||| |||| ||||||| Sbjct: 472423 cgtcaccaacacacccgacgtcctgaccgaggaggtcgcggacgtcgcaatcggcct 472479
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 tcgacgcgctgccgtcgctcg 239 ||||||||||||||||||||| Sbjct: 3550977 tcgacgcgctgccgtcgctcg 3550957
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 ctcaccgacgacgtcgccgac 352 ||||||||||||||||||||| Sbjct: 250554 ctcaccgacgacgtcgccgac 250534
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 286 caagtgccgcgagcgcgggat 306 ||||||||||||||||||||| Sbjct: 296436 caagtgccgcgagcgcgggat 296416
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 348 ccgacctcgccgtcggcctcaccatcgcc 376 ||||||||| || |||||||||||||||| Sbjct: 26361 ccgacctcgtcgccggcctcaccatcgcc 26333
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 65 aacgcctacctggagcaggagctcgaccgccgc 97 |||||||||||| ||||||| ||||||| |||| Sbjct: 2612847 aacgcctacctgcagcaggacctcgacccccgc 2612879
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 348 ccgacctcgccgtcggcctcaccatcgcc 376 ||||||||| || |||||||||||||||| Sbjct: 33254100 ccgacctcgtcgccggcctcaccatcgcc 33254072 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 163 ctccgccatccgcgccgtcgtcggcaacgccg 194 ||||||||||||||||| || |||| |||||| Sbjct: 4485633 ctccgccatccgcgccgccggcggctacgccg 4485602
>dbj|AK107225.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D09, full insert sequence Length = 1297 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctcaccatcgcc 376 ||||||||| || |||||||||||||||| Sbjct: 379 ccgacctcgtcgccggcctcaccatcgcc 407
>dbj|AK104831.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A04, full insert sequence Length = 2181 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctcaccatcgcc 376 ||||||||| || |||||||||||||||| Sbjct: 376 ccgacctcgtcgccggcctcaccatcgcc 404
>dbj|AK072809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141I19, full insert sequence Length = 2338 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctcaccatcgcc 376 ||||||||| || |||||||||||||||| Sbjct: 382 ccgacctcgtcgccggcctcaccatcgcc 410
>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence Length = 165745 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 348 ccgacctcgccgtcggcctcaccatcgcc 376 ||||||||| || |||||||||||||||| Sbjct: 136749 ccgacctcgtcgccggcctcaccatcgcc 136721
>dbj|AP006863.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08G16, TM0934, complete sequence Length = 104894 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 302 gggatccgcgtcaccaacacccacgacgt 330 ||||| |||||||||||||||| |||||| Sbjct: 61646 gggattcgcgtcaccaacacccccgacgt 61674
>ref|XM_480311.1| Oryza sativa (japonica cultivar-group), mRNA Length = 507 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 cgtcgccgacctcgccgtcg 362 |||||||||||||||||||| Sbjct: 5 cgtcgccgacctcgccgtcg 24
>ref|XM_467764.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1642 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgccaacgcctccgccatcc 173 |||||||||||||||||||| Sbjct: 601 cgccaacgcctccgccatcc 620
>ref|XM_506970.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_G04.19 mRNA Length = 1758 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgccaacgcctccgccatcc 173 |||||||||||||||||||| Sbjct: 625 cgccaacgcctccgccatcc 644
>ref|NM_197212.1| Oryza sativa (japonica cultivar-group) putative peroxidase (OSJNBa0078O01.12), mRNA Length = 1828 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctc 367 |||||||||||||||||||| Sbjct: 362 ccgacctcgccgtcggcctc 381
>ref|XM_470368.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tggagcaggagctcgaccgc 94 |||||||||||||||||||| Sbjct: 524 tggagcaggagctcgaccgc 543
>ref|XM_476394.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2400 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 gtcgccgacctcgccgtcggcctc 367 ||||||||||||||| |||||||| Sbjct: 175 gtcgccgacctcgccctcggcctc 198
>ref|XM_474588.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1617 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 163 ctccgccatccgcgccgtcgtcggcaacgccg 194 ||||||||||||||||| || |||| |||||| Sbjct: 225 ctccgccatccgcgccgccggcggctacgccg 256
>ref|XM_473086.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1002 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 cgacgacgtcgccgacctcgccgt 360 ||||||||||| |||||||||||| Sbjct: 34 cgacgacgtcgacgacctcgccgt 11
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 cgacgccgcgctcatcgacgcgct 228 |||||||||||| ||||||||||| Sbjct: 3217944 cgacgccgcgctgatcgacgcgct 3217967
>gb|AY658863.1| Synthetic construct Peudomonas aeruginosa clone FLH042260.01F PA3896 gene, partial cds Length = 978 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 312 tcaccaacacccacgacgtcctcaccga 339 |||||||||| | ||||||||||||||| Sbjct: 275 tcaccaacacgcccgacgtcctcaccga 302
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 cgacgccgcgctcatcgacgcgct 228 |||||||||||| ||||||||||| Sbjct: 763212 cgacgccgcgctgatcgacgcgct 763189
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tggagcaggagctcgaccgc 94 |||||||||||||||||||| Sbjct: 34988311 tggagcaggagctcgaccgc 34988330
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctc 367 |||||||||||||||||||| Sbjct: 134054 ccgacctcgccgtcggcctc 134073
>gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence Length = 120464 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctgctgctgcaccccatg 64 |||||||||||||||||||| Sbjct: 56826 tgctgctgctgcaccccatg 56807
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 cgccatccgcgccgtcgtcggcaa 189 ||||||||||||| |||||||||| Sbjct: 3880582 cgccatccgcgccttcgtcggcaa 3880559
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ccgcgccgagttcctccgcg 155 |||||||||||||||||||| Sbjct: 3642536 ccgcgccgagttcctccgcg 3642517
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cgccgacctcgccgtcggcc 365 |||||||||||||||||||| Sbjct: 110021 cgccgacctcgccgtcggcc 110002
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cgccgacctcgccgtcggcc 365 |||||||||||||||||||| Sbjct: 20921 cgccgacctcgccgtcggcc 20902
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cgccgacctcgccgtcggcc 365 |||||||||||||||||||| Sbjct: 305854 cgccgacctcgccgtcggcc 305835
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 cgacgccgcgctcatcgacgcgct 228 |||||||||||| ||||||||||| Sbjct: 571858 cgacgccgcgctgatcgacgcgct 571835
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tcaccgacgacgtcgccgac 352 |||||||||||||||||||| Sbjct: 142814 tcaccgacgacgtcgccgac 142795
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cgccgtcggcctcaccatcg 374 |||||||||||||||||||| Sbjct: 242965 cgccgtcggcctcaccatcg 242946
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 cgacgtcctcaccgacgacg 344 |||||||||||||||||||| Sbjct: 77353 cgacgtcctcaccgacgacg 77334
>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence Length = 150305 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 163 ctccgccatccgcgccgtcgtcggcaacgccg 194 ||||||||||||||||| || |||| |||||| Sbjct: 113365 ctccgccatccgcgccgccggcggctacgccg 113334
>gb|AC078828.12| Homo sapiens 3 BAC RP11-779P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172043 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 ccgcgtcgacctccccaagtgccg 294 |||| ||||||||||||||||||| Sbjct: 99345 ccgcctcgacctccccaagtgccg 99368
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 cgacgtcgccgacctcgccg 359 |||||||||||||||||||| Sbjct: 1310019 cgacgtcgccgacctcgccg 1310000
>gb|AF348918.1|AF348918 Pycnococcus provasolii enolase 2 (eno) gene, partial cds Length = 1045 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 gccgacctcgccgtcggcct 366 |||||||||||||||||||| Sbjct: 1010 gccgacctcgccgtcggcct 1029
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 catcgacgcgctgccgtcgctcga 240 |||||||||||| ||||||||||| Sbjct: 26189950 catcgacgcgctcccgtcgctcga 26189973 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cgccgacctcgccgtcggcc 365 |||||||||||||||||||| Sbjct: 25997513 cgccgacctcgccgtcggcc 25997532
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctc 367 |||||||||||||||||||| Sbjct: 18630243 ccgacctcgccgtcggcctc 18630262
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 cgtcgccgacctcgccgtcg 362 |||||||||||||||||||| Sbjct: 4277486 cgtcgccgacctcgccgtcg 4277505
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 gtcgccgacctcgccgtcggcctc 367 ||||||||||||||| |||||||| Sbjct: 497807 gtcgccgacctcgccctcggcctc 497784
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tggagcaggagctcgaccgc 94 |||||||||||||||||||| Sbjct: 35078383 tggagcaggagctcgaccgc 35078402
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgccaacgcctccgccatcc 173 |||||||||||||||||||| Sbjct: 31303837 cgccaacgcctccgccatcc 31303856
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ccctgggcgtgctgctgctg 55 |||||||||||||||||||| Sbjct: 1309357 ccctgggcgtgctgctgctg 1309338
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 310 cgtcaccaacacccacgacgtcctcaccgacg 341 |||||||||||| | ||||||||| ||||||| Sbjct: 590762 cgtcaccaacacgcccgacgtcctgaccgacg 590731
>gb|AE004807.1| Pseudomonas aeruginosa PAO1, section 368 of 529 of the complete genome Length = 10698 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 312 tcaccaacacccacgacgtcctcaccga 339 |||||||||| | ||||||||||||||| Sbjct: 1476 tcaccaacacgcccgacgtcctcaccga 1503
>gb|AE004607.1| Pseudomonas aeruginosa PAO1, section 168 of 529 of the complete genome Length = 10160 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ccgcgccgagttcctccgcg 155 |||||||||||||||||||| Sbjct: 2865 ccgcgccgagttcctccgcg 2846
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tggagcaggagctcgaccgc 94 |||||||||||||||||||| Sbjct: 27169 tggagcaggagctcgaccgc 27150
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03 Length = 183623 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 cgtcgccgacctcgccgtcg 362 |||||||||||||||||||| Sbjct: 40280 cgtcgccgacctcgccgtcg 40299
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgccaacgcctccgccatcc 173 |||||||||||||||||||| Sbjct: 73705 cgccaacgcctccgccatcc 73724
>dbj|AB178052.1| Endosymbiont Suiyo-Bathy-1 of Myrina sp. HEE-2004 sopT gene for ATP sulfurylase, partial cds, clone:Suiyo-Bathy(ATPs)-1 Length = 503 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 catggcgatggagtccctgg 41 |||||||||||||||||||| Sbjct: 51 catggcgatggagtccctgg 70
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 gtcgccgacctcgccgtcggcctc 367 ||||||||||||||| |||||||| Sbjct: 99971 gtcgccgacctcgccctcggcctc 99948
>dbj|AK120900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M03, full insert sequence Length = 1516 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctc 367 |||||||||||||||||||| Sbjct: 504 ccgacctcgccgtcggcctc 523
>dbj|AK108072.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-C08, full insert sequence Length = 1642 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgccaacgcctccgccatcc 173 |||||||||||||||||||| Sbjct: 601 cgccaacgcctccgccatcc 620
>dbj|AK107659.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-G08, full insert sequence Length = 1440 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 cgacgtcgccgacctcgccgtcggcctc 367 ||||||||||||| | |||||||||||| Sbjct: 195 cgacgtcgccgacatggccgtcggcctc 222
>dbj|AK072229.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169N10, full insert sequence Length = 1756 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgccaacgcctccgccatcc 173 |||||||||||||||||||| Sbjct: 623 cgccaacgcctccgccatcc 642
>dbj|AK064765.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H12, full insert sequence Length = 2274 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 163 ctccgccatccgcgccgtcgtcggcaacgccg 194 ||||||||||||||||| || |||| |||||| Sbjct: 288 ctccgccatccgcgccgccggcggctacgccg 319
>dbj|AK064159.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F07, full insert sequence Length = 1647 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 163 ctccgccatccgcgccgtcgtcggcaacgccg 194 ||||||||||||||||| || |||| |||||| Sbjct: 302 ctccgccatccgcgccgccggcggctacgccg 333
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1567_G09 Length = 121388 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 gtcgccgacctcgccgtcggcctc 367 ||||||||||||||| |||||||| Sbjct: 51719 gtcgccgacctcgccctcggcctc 51696
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 cgacgccgcgctcatcgacgcgct 228 ||||||||||||| |||||||||| Sbjct: 1037521 cgacgccgcgctcttcgacgcgct 1037498
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 cgacgtcgccgacctcgccg 359 |||||||||||||||||||| Sbjct: 2782679 cgacgtcgccgacctcgccg 2782698
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ccgacctcgccgtcggcctc 367 |||||||||||||||||||| Sbjct: 18641096 ccgacctcgccgtcggcctc 18641115
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 catcgacgcgctgccgtcgctcga 240 |||||||||||| ||||||||||| Sbjct: 26118126 catcgacgcgctcccgtcgctcga 26118149 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cgccgacctcgccgtcggcc 365 |||||||||||||||||||| Sbjct: 25925689 cgccgacctcgccgtcggcc 25925708
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cgccgacctcgccgtcggcc 365 |||||||||||||||||||| Sbjct: 114158 cgccgacctcgccgtcggcc 114139
>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144241 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 catcgacgcgctgccgtcgctcga 240 |||||||||||| ||||||||||| Sbjct: 80188 catcgacgcgctcccgtcgctcga 80211
>dbj|AB071808.1| Oryza sativa (japonica cultivar-group) mRNA for transcription factor PCF8, partial cds Length = 1403 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 catcgacgcgctgccgtcgctcga 240 |||||||||||| ||||||||||| Sbjct: 456 catcgacgcgctcccgtcgctcga 479 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,868,053 Number of Sequences: 3902068 Number of extensions: 2868053 Number of successful extensions: 76558 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70626 Number of HSP's gapped (non-prelim): 5932 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
