Clone Information

BLAST Search Result

Clone Name	bast26h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22	37	0.025
2	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	36	0.043
3	VGLZ_EHV1K (P32515) Glycoprotein precursor	34	0.13
4	PAKM_DROME (Q9VXE5) Serine/threonine-protein kinase PAK mbt (EC ...	34	0.13
5	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	33	0.21
6	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	33	0.37
7	RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/in...	32	0.48
8	CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CR...	32	0.48
9	YHL1_EBV (P03181) Hypothetical protein BHLF1	32	0.62
10	VGLX_EHV1B (P28968) Glycoprotein X precursor	32	0.81
11	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	32	0.81
12	VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor	32	0.81
13	CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CR...	32	0.81
14	NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 prec...	31	1.1
15	INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)	31	1.1
16	PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor	31	1.4
17	IF2_DESDG (Q30WJ0) Translation initiation factor IF-2	31	1.4
18	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	31	1.4
19	LRP2_HHV1F (P17589) Latency-related protein 2	31	1.4
20	GA2L3_HUMAN (Q86XJ1) GAS2-like protein 3 (Growth arrest-specific...	30	1.8
21	ATG13_ASPFU (Q4WHN5) Autophagy-related protein 13	30	1.8
22	MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)	30	1.8
23	BRAC_CANFA (Q9GL27) Brachyury protein (T protein)	30	2.4
24	ZO2_CANFA (Q95168) Tight junction protein ZO-2 (Zonula occludens...	30	3.1
25	SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-li...	30	3.1
26	CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2	30	3.1
27	BSN_MOUSE (O88737) Bassoon protein	30	3.1
28	YBV8_YEAST (P38266) Protein YBR108W	29	4.0
29	PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)	29	4.0
30	NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr...	29	4.0
31	ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	29	4.0
32	VGLL2_HUMAN (Q8N8G2) Transcription cofactor vestigial-like prote...	29	4.0
33	PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein ...	29	4.0
34	SMPX_RAT (Q925F0) Small muscular protein (Stretch-responsive ske...	29	4.0
35	GST1_DROME (P41043) Glutathione S-transferase S1 (EC 2.5.1.18) (...	29	5.3
36	DCBD1_HUMAN (Q8N8Z6) Discoidin, CUB and LCCL domain-containing p...	29	5.3
37	SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouc...	29	5.3
38	DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)	29	5.3
39	R4RL1_HUMAN (Q86UN2) Reticulon-4 receptor-like 1 precursor (Nogo...	29	5.3
40	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	28	6.9
41	BGAL_PSEHA (P81650) Beta-galactosidase (EC 3.2.1.23) (Lactase) (...	28	6.9
42	H15_DROME (Q94890) T-box protein H15	28	6.9
43	VNUA_PRVKA (P33485) Probable nuclear antigen	28	6.9
44	UBAX1_ARATH (Q7Y175) UBA and UBX domain-containing protein At4g1...	28	9.0
45	DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphat...	28	9.0
46	RL27A_TETTH (Q00454) 60S ribosomal protein L27a (L29)	28	9.0
47	RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)	28	9.0
48	HXA2_MOUSE (P31245) Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11)	28	9.0
49	CSH3_SCHPO (O43125) Protein csh3	28	9.0
50	BARH1_DROME (Q24255) Homeobox protein B-H1 (Homeobox protein BarH1)	28	9.0
51	PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1	28	9.0
52	IRX3_HUMAN (P78415) Iroquois-class homeodomain protein IRX-3 (Ir...	28	9.0
53	TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Ta...	28	9.0
54	IF2_CORDI (Q6NGN2) Translation initiation factor IF-2	28	9.0
55	YPE2_RHORU (P23139) Hypothetical 25.8 kDa protein in petC 3'region	28	9.0
56	PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46	28	9.0
57	PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46	28	9.0
58	MEIS2_HUMAN (O14770) Homeobox protein Meis2 (Meis1-related prote...	28	9.0

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
 Frame = +3

Query: 18  SPSPSRHLHLHPSASKQSHPNHGPP---------RAGQHPAGRRGGPAAQEGRQAAPHSA 170
           SPSP R   L P     SHP    P         R+ + P+ R+G PA +  R ++P + 
Sbjct: 62  SPSPRRDRSLSPRDQPHSHPRSRSPTPRSQSPSRRSVRSPSPRQGSPARRVDRSSSPRAR 121

Query: 171 RPLP 182
            P P
Sbjct: 122 SPPP 125

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 35.8 bits (81), Expect = 0.043
 Identities = 22/57 (38%), Positives = 26/57 (45%)
 Frame = +3

Query: 12  QTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           Q  PSPS H H  PS        H PPR    P+ RR  P ++ G    P  A+P P
Sbjct: 139 QRPPSPS-HGHAPPSGG------HTPPRGQHPPSHRRPSPPSRHGHPPPPTYAQPPP 188

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>VGLZ_EHV1K (P32515) Glycoprotein precursor|
          Length = 383

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 22/56 (39%), Positives = 25/56 (44%)
 Frame = +3

Query: 15  TSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           +SP  S H     +A+ Q H  H   RAG    GRRG P  Q G    PH  R  P
Sbjct: 62  SSPPTSTHTSSPSTANAQKHAGHHRGRAG----GRRGSP--QGGSHTTPHPDRLTP 111

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>PAKM_DROME (Q9VXE5) Serine/threonine-protein kinase PAK mbt (EC 2.7.11.1)|
           (p21-activated kinase-related protein) (Protein mushroom
           bodies tiny)
          Length = 639

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 21  PSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQ 140
           P P  H HL  SAS+ S  + G   A Q  +G  GG A Q
Sbjct: 300 PHPHHHQHLAKSASRASSSSGGASSAAQQASGASGGAAGQ 339

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 15  TSPSPSRHLHLHPSASKQSHPNHGP--PRAGQHPAGRRGGPAAQEGRQAAPHSARPL 179
           +SP  S      P  +K+  P+  P  P+    P  RRG  A+ +GRQ+   S RP+
Sbjct: 683 SSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPI 739

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLH----PSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSAR 173
           PLQ  P P    HL     P+ S        P  A Q PA +   P   +GRQ+ P +  
Sbjct: 480 PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGG 539

Query: 174 P 176
           P
Sbjct: 540 P 540

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>RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/interference|
           protein 3)
          Length = 984

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +3

Query: 15  TSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHS 167
           T P+P  +  L   A     P  GPPR GQ PA + G        QA  HS
Sbjct: 473 TLPAPLENAELCTQAMALETPTPGPPREGQSPASQAG--TQHPPAQATAHS 521

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>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)|
           (Fragment)
          Length = 353

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  SPSRHLHLHPSASKQSHPNHGPPRAGQHPA 113
           +P  HLH HP   +   P+H  P   QHPA
Sbjct: 114 TPHHHLHSHPHQHQTLPPHHPYPHQHQHPA 143

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>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 54  SASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           S +++ HP   PP AGQ P+G  GG  A  G    P +  P
Sbjct: 538 SGAQRGHP---PPGAGQRPSGPTGGRPAAPGAPGTPAAPGP 575



 Score = 32.0 bits (71), Expect = 0.62
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 54  SASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           S +++ HP   PP AGQ P+G  GG  A  G    P +  P
Sbjct: 413 SGAQRGHP---PPGAGQRPSGPTGGRPAAPGAPGTPAAPGP 450



 Score = 32.0 bits (71), Expect = 0.62
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 54  SASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           S +++ HP   PP AGQ P+G  GG  A  G    P +  P
Sbjct: 288 SGAQRGHP---PPGAGQRPSGPTGGRPAAPGAPGTPAAPGP 325



 Score = 32.0 bits (71), Expect = 0.62
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 54  SASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           S +++ HP   PP AGQ P+G  GG  A  G    P +  P
Sbjct: 163 SGAQRGHP---PPGAGQRPSGPTGGRPAAPGAPGTPAAPGP 200

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>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +3

Query: 48  HPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           H +A+ Q H  H   RAG    GRRG P  Q G    PH  R  P
Sbjct: 487 HTTANAQKHAGHHRGRAG----GRRGSP--QGGSHTTPHPDRLTP 525

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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
 Frame = +3

Query: 15  TSPSPSRHLHLHPSASKQSHPN-HGPPRAGQHP-----AGRRGGPAAQEGRQAAPHSARP 176
           T+P P  H+   P+   Q  P+ H PP    HP      G  G P+A    Q   H   P
Sbjct: 792 TAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 851

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>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +3

Query: 48  HPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           H +A+ Q H  H   RAG    GRRG P  Q G    PH  R  P
Sbjct: 556 HTTANAQKHAGHHRGRAG----GRRGSP--QGGSHTTPHPDRLTP 594

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>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)|
          Length = 508

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  SPSRHLHLHPSASKQSHPNHGPPRAGQHPA 113
           +P  H+H HP   +   P+H  P   QHPA
Sbjct: 269 TPHHHMHSHPHQHQTLPPHHPYPHQHQHPA 298

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>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            [Contains: Notch 2 extracellular truncation; Notch 2
            intracellular domain]
          Length = 2471

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 27   PSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSA 170
            PS+H +   +A++++ PNHG    G+HP       +  +   ++PHSA
Sbjct: 2387 PSQHSYASSNAAERT-PNHGGHLQGEHPYLTPSPESPDQWSSSSPHSA 2433

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>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1612

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +3

Query: 15  TSP-SPSRHLHLHPSASKQSHPNHGPPRAGQ-HPAGRRGGPA---AQEGRQAAPHSARP 176
           TSP  PS   H HPS+   SH +  P +  + H A   G PA    +E + + P  A+P
Sbjct: 117 TSPYGPSTPSHAHPSSRPDSHAHVSPKKEPESHFAVNHGAPAYSVMREPQASPPKEAKP 175

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>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/57 (29%), Positives = 19/57 (33%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           P    P P       P A  Q  P  GPP  G  P   +G P     +Q  P    P
Sbjct: 151 PPPAGPQPRPPQGPPPPAGPQPRPPQGPPTTGPQPRPTQGPPPTGGPQQQPPQGPPP 207



 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/57 (29%), Positives = 19/57 (33%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           P  T P P       P+   Q  P  GPP  G        GP    G Q +P    P
Sbjct: 178 PPTTGPQPRPTQGPPPTGGPQQQPPQGPPPPGGPQPRPPQGPPPPGGPQPSPTQGPP 234

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>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2|
          Length = 984

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +3

Query: 63  KQSHPNHGPPRAGQHPAG-RRGGPAAQEGR----QAAPHSARPLP 182
           +   P+ GP  AG  PAG R GGP   + R    + AP S  P P
Sbjct: 275 RAERPDRGPRPAGARPAGPRPGGPRQGDSRPGDGRPAPRSGAPRP 319

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 15  TSPSPSRHLHLHPSASKQSHPNHGP--PRAGQHPAGRRGGPAAQEGRQAAPHSARPL 179
           +SPS S      P  +K+  P+  P  P+    P  RRG  ++ + RQ+   S RP+
Sbjct: 678 SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASSSPQRRQSPSPSTRPI 734

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>LRP2_HHV1F (P17589) Latency-related protein 2|
          Length = 107

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLH----PSASKQSHPN-HGPPRAGQHPAGR 119
           PL  +P+P+ H H H    P     +HP+ H PPR+ QH  G+
Sbjct: 20  PLPRTPTPA-HPHSHAPPLPRTPTPTHPHSHAPPRSIQHRQGK 61

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>GA2L3_HUMAN (Q86XJ1) GAS2-like protein 3 (Growth arrest-specific 2-like 3)|
          Length = 694

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 3   TPLQTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAA 137
           T  QT+P  ++      + +K  H   GPPR+G+ PA  R  P++
Sbjct: 623 TKTQTAPKSAQ------TVAKSQHSTKGPPRSGKTPASIRKPPSS 661

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>ATG13_ASPFU (Q4WHN5) Autophagy-related protein 13|
          Length = 958

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 24/59 (40%), Positives = 30/59 (50%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           PL  SP  SR +   PS    S P H PP +    +GR+ G AA E   A+ +SA P P
Sbjct: 433 PLGASPR-SRPIVSAPS----SEPKHMPPPSVA-ASGRKTGQAASENAIASSNSASPRP 485

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>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 403

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +3

Query: 12  QTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEG 146
           Q+   P  H H H +A    HP  G P A    A   GG     G
Sbjct: 174 QSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGG 218

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>BRAC_CANFA (Q9GL27) Brachyury protein (T protein)|
          Length = 435

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +3

Query: 3   TPLQTSPSPSRHLHLHPSASKQSHPN-----HGPPRAGQHPAGRRGGPAAQEGRQAAPHS 167
           TP  TS  P  H    P+ S Q +P+     +G    G  PAG   G  AQ  R ++ H 
Sbjct: 325 TPAHTSMLPMSHSAGPPTGSSQ-YPSLWSVSNGTITPGAQPAGMSNGLGAQFFRGSSAHG 383

Query: 168 ARPLPH 185
           A PL H
Sbjct: 384 A-PLGH 388

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>ZO2_CANFA (Q95168) Tight junction protein ZO-2 (Zonula occludens 2 protein)|
            (Zona occludens 2 protein) (Tight junction protein 2)
          Length = 1174

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 6    PLQT-SPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQE--GRQAAPHSAR 173
            P++T  P P    H   ++S+   P  GP R  Q P G  G  A +E   +Q + HS R
Sbjct: 1105 PIKTHKPDPGLSQH---TSSRPPEPQKGPSRLYQDPRGSYGSDAEEEEYRQQLSEHSKR 1160

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>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +3

Query: 15  TSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           + P P       P    Q  P++G P+ G  P  R G PA        P  ++P
Sbjct: 53  SGPRPPPPFGQSPQPFPQQSPSYGAPQRGPSPMSRPGPPAGMARPGGPPPVSQP 106

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>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2|
          Length = 1484

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
 Frame = +3

Query: 21   PSPSRHLHLHPSA----------SKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSA 170
            P+ + H H+ P            S  SHP H PPR  Q      GG       Q   +S 
Sbjct: 1147 PNSAAHYHISPGLQGVGPVMGGKSPASHPQHFPPRGFQSNHPHSGGFPRYRPPQGMRYSY 1206

Query: 171  RPLP 182
             P P
Sbjct: 1207 HPPP 1210

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>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = +3

Query: 27   PSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
            P RH           H  H    AG+ P  R   P A   R    H ARP P
Sbjct: 3643 PGRHTSAKEHRHHSDHGRHSGRHAGEEPGRRAAKPHA---RDMGRHEARPHP 3691

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>YBV8_YEAST (P38266) Protein YBR108W|
          Length = 947

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 18  SPSPSRHLHLHPSASKQSHPNHGPPRAGQH--PAGRRGGPAAQEGRQAAPHSARP 176
           SPS    L  H    +  + +HG    GQ   P+G++  P  Q G+Q  P  A+P
Sbjct: 231 SPSFQNGLQCH---QQPQYVSHGSTNLGQSQFPSGQQQQPTTQFGQQVLPSPAQP 282

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>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
 Frame = +3

Query: 3   TPLQTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAG----------RRGGPAAQEGRQ 152
           T  +TS  P++ L   P ++K S     P +     +G          R+GGP     +Q
Sbjct: 206 TSAKTSAGPTKPLPQQPDSAKTSSQAPPPTKPSLQQSGSVKQPSQQPARQGGPVKPSAQQ 265

Query: 153 AAPHSARP 176
           A P   +P
Sbjct: 266 AGPPKQQP 273

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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (Motch B) [Contains: Notch 2 extracellular truncation;
            Notch 2 intracellular domain]
          Length = 2470

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 27   PSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSA 170
            PS+H +   +A++++ P+HG    G+HP       +  +   ++PHSA
Sbjct: 2386 PSQHSYASSNAAERT-PSHGGHLQGEHPYLTPSPESPDQWSSSSPHSA 2432

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>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
 Frame = +3

Query: 21  PSPSRHLHLHPSASKQSHPNHGPPRAGQH------PAGRRGGPAAQEGRQAAPHSARPLP 182
           PSP       P +  QS PN  PPRA  H      P  R   P +      +P     +P
Sbjct: 522 PSPCPSHSSRPPSRYQSGPNSLPPRAATHTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMP 581

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>VGLL2_HUMAN (Q8N8G2) Transcription cofactor vestigial-like protein 2 (Vgl-2)|
           (VITO1 protein)
          Length = 317

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +3

Query: 36  HLHLHPSASK---QSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPH 164
           H HLH  A++    +HP+H  P       G  G  AA   R AA H
Sbjct: 183 HGHLHQGATEPWHHAHPHHAHPHHPYALGGALGAQAAPYPRPAAVH 228

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>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor|
           (PRP-1/PRP-2) (Parotid proline-rich protein 1/2)
           (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa)
           (Parotid isoelectric focusing variant protein) (PIF-S)
           (Parotid double-band
          Length = 166

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRG---GPAAQEGRQAAPHSARP 176
           P Q  P        HP    Q  P  GPP+ G HP   RG   GP  Q G Q  P    P
Sbjct: 86  PPQGKPQGPPQQGGHPPPP-QGRPQ-GPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPP 143

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>SMPX_RAT (Q925F0) Small muscular protein (Stretch-responsive skeletal muscle|
           protein)
          Length = 85

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 90  PRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           P AGQ P  +   P   EG  A P   +P+P
Sbjct: 25  PGAGQPPRRKESTPGTAEGAPATPEEKKPVP 55

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>GST1_DROME (P41043) Glutathione S-transferase S1 (EC 2.5.1.18) (GST|
           class-sigma 1) (Glutathione S-transferase 2)
          Length = 249

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +3

Query: 66  QSHPNHG-PPRAGQHPAGRRGGPAAQEGRQAAP--HSARPLPH 185
           Q+ P  G PP  G+ P    G   A EG +AAP    A P+ H
Sbjct: 6   QAPPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKH 48

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>DCBD1_HUMAN (Q8N8Z6) Discoidin, CUB and LCCL domain-containing protein 1|
           precursor
          Length = 715

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +3

Query: 6   PLQTSPSPSRH-LHLHPSASKQSHPNHGPPRAGQHPAGRRG-----GPAAQEGRQAAPHS 167
           P   +P   RH L  H  +++  +   GP    +H     G     G  AQ+G    PHS
Sbjct: 598 PEYATPIVERHVLRAHTFSAQSGYRVPGPQPGHKHSLSSGGFSPVAGVGAQDGDYQRPHS 657

Query: 168 ARP 176
           A+P
Sbjct: 658 AQP 660

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>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox|
           protein NK-1)
          Length = 659

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
 Frame = +3

Query: 21  PSPSRHLHLHPSA----SKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           P P  H H HPSA       S  +  PP     P      PA    +Q +P  A P
Sbjct: 224 PHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPPTSPAMHSDQQMSPPIAPP 279

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>DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)|
          Length = 830

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +3

Query: 12  QTSPSPSRHLHLHPSA-SKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           Q  P P      HPS  S    P   PP   Q P   RGGP A       P   RP P
Sbjct: 747 QPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGA-----PPPPGMRPPP 799

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>R4RL1_HUMAN (Q86UN2) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor|
           homolog 2) (Nogo-66 receptor-related protein 3) (NgR3)
           (Nogo receptor-like 2)
          Length = 441

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 54  SASKQSHPNHGPPRAGQHPAGRRGG 128
           +A K+ H  HGP R+  HP G R G
Sbjct: 324 AARKEHHSPHGPTRSKGHPHGPRPG 348

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 15  TSPSPSRHLHLHPSASKQSHPN---HGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPL 179
           +SPS S      P  +K+  P+     P  +   P  RRG  ++ + RQ+   S RP+
Sbjct: 664 SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPI 721

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>BGAL_PSEHA (P81650) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
           (Beta-D-galactoside galactohydrolase)
          Length = 1038

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 16  PPRPHLGISTSIRQQASNPIQTMALRALDN 105
           PP P +G+ST+I +Q+   +  + L   +N
Sbjct: 888 PPMPRIGLSTTINKQSDTKVNWLGLGPFEN 917

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>H15_DROME (Q94890) T-box protein H15|
          Length = 660

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +3

Query: 15  TSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           T+    R  H H S++  +  N G        + +RG  AA  G  A P    P P
Sbjct: 186 TTGKQQRQHHNHHSSNTNNSSNSGNSNTNSKSSSQRGRSAAAVGAAATPSPPPPPP 241

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLHPSA----SKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSAR 173
           P +  PS   H H  P      S  SH +H  P  G  P+       +       P S R
Sbjct: 145 PTRDPPSAKTHHHQDPPGGGPPSTSSHHHHQDPPGGGPPSPPPRPSTSSSSSHQGPPSTR 204

Query: 174 PLP 182
           P P
Sbjct: 205 PPP 207

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>UBAX1_ARATH (Q7Y175) UBA and UBX domain-containing protein At4g15410|
          Length = 421

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +3

Query: 3   TPLQTSPSPSRHLHLHPSA-----SKQSHPNHGPPRAGQHPAGRRGGPAAQ 140
           TP +TSPSPSR     PS+       +S    G  +  ++P+G R   + Q
Sbjct: 80  TPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQ 130

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>DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 956

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 21  PSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAA 137
           P P    H    +   S   HGPP  G  P G  GGP++
Sbjct: 654 PPPPPPGHKRTLSDPPSPLPHGPPNKGAVPWGNDGGPSS 692

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>RL27A_TETTH (Q00454) 60S ribosomal protein L27a (L29)|
          Length = 149

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 42  HLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPL 179
           HL  +   + H +HG  R G+H   R+GG     G+    H  R L
Sbjct: 4   HLKKTRKLRGHVSHGHGRVGKH---RKGGCRGGRGKAGGMHHHRIL 46

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>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)|
          Length = 681

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 12  QTSPSPSRHLHLHPSASKQSHPNH-GPPRAGQHPAGRRGGPAAQEGRQAAPHSARP 176
           + +P P R     P  S ++ P+  G P A       R GPA   G QAAPH+A P
Sbjct: 300 RATPGPGRF----PEQSTEAPPSDPGYPGAVAPAREERTGPAG--GFQAAPHTAAP 349

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>HXA2_MOUSE (P31245) Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11)|
          Length = 372

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +3

Query: 51  PSASKQSHPNHGPPRAGQ---HPAGRRGGP 131
           PS +  SHP HG    G+    PAG RG P
Sbjct: 57  PSLNPGSHPRHGAGVGGRPKSSPAGSRGSP 86

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>CSH3_SCHPO (O43125) Protein csh3|
          Length = 296

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 27  PSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           PS ++ L   ++ ++ P   PP+    PA     P  Q  + A P    P P
Sbjct: 190 PSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYP 241

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>BARH1_DROME (Q24255) Homeobox protein B-H1 (Homeobox protein BarH1)|
          Length = 544

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 21  PSPSRHLHLHPSASKQSHP--NHGPPRAGQHPAGRRGGPAAQEGRQAAPHSA 170
           P P  H H HP A    H    H PP AG +        AA +   AA  +A
Sbjct: 152 PHPPTHPHTHPHALMHPHGKLGHFPPTAGGNGLNVAQYAAAMQQHYAAAAAA 203

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>PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLHPSASKQSH-PNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLP 182
           P QT+PS   H H H   S  +  P  G        A  + GP++       PH A P P
Sbjct: 33  PPQTAPSSHHHHHHHYHQSGTATLPRLGAGGLASAAASAQRGPSSSATLPRPPHHAPPGP 92

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>IRX3_HUMAN (P78415) Iroquois-class homeodomain protein IRX-3 (Iroquois|
           homeobox protein 3) (Homeodomain protein IRXB1)
          Length = 501

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +3

Query: 6   PLQTSPSPSRHLH------LHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHS 167
           P   +P+P+  L       L  +A+   +P   PP AG  P G    P+A +   AA  +
Sbjct: 333 PCAPAPAPASALQKPKIWSLAETATSPDNPRRSPPGAGGSPPGAAVAPSALQLSPAAAAA 392

Query: 168 A 170
           A
Sbjct: 393 A 393

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>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2014

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +3

Query: 3   TPLQTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQE--GRQAAPHSARP 176
           +P   + S S H   H SAS+ S P H  PR     +     P      G + AP ++ P
Sbjct: 638 SPSLATTSSSSHNPGHSSASRTSSPLHAAPRGAPQTSLESSQPPCTVCIGHRDAPRASSP 697

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>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2|
          Length = 953

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +3

Query: 6   PLQTSPSPSRHLHLHPSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGR 149
           P  + P P+        +     P  GP   G  P G +GGPA +  R
Sbjct: 179 PFSSGPRPAPRPGGGNRSGNAPRPGGGPRPGGNRPQGGQGGPAERAPR 226

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>YPE2_RHORU (P23139) Hypothetical 25.8 kDa protein in petC 3'region|
          Length = 238

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
 Frame = +3

Query: 18  SPSPSRHLHLHPSAS------KQSHPNHGPP--RAGQHPAGRRG 125
           SPSP RHL +H  A+      KQS    G P  R  QH  G+ G
Sbjct: 155 SPSPGRHLSVHGGAAVLDPGRKQSLSAMGLPRHRHDQHARGQAG 198

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>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46|
          Length = 778

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = -3

Query: 120 GGRQGVVQRAEGHGLDGIACLLTDGGGDAEMGTGRFG 10
           GG  G      G G +G    LTDG G AE GTG  G
Sbjct: 564 GGAAGFAGGVGGAGGEG----LTDGAGTAEGGTGGLG 596

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>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46|
          Length = 778

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = -3

Query: 120 GGRQGVVQRAEGHGLDGIACLLTDGGGDAEMGTGRFG 10
           GG  G      G G +G    LTDG G AE GTG  G
Sbjct: 564 GGAAGFAGGVGGAGGEG----LTDGAGTAEGGTGGLG 596

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>MEIS2_HUMAN (O14770) Homeobox protein Meis2 (Meis1-related protein 1)|
          Length = 477

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 51  PSASKQSHPNHGPPRAGQHPAGRRGGPAAQEGRQAAPHSARPLPH 185
           P     + P++ PP+   HP   R GP       + PH    + H
Sbjct: 397 PMGMSMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHPAMMMH 441


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.127    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,652,277
Number of Sequences: 219361
Number of extensions: 555050
Number of successful extensions: 2942
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 2543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2904
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result