ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast26g12 |
|---|---|
| Clone Library Name | barley_pub |
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 34.3 bits (77), Expect = 0.14 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%) Frame = +1 Query: 205 GPLPGPAARPHDDSPRRVRQPGDGRPRRWAGI----------HRRGSARPWARWVRVYRH 354 GP PGP P P+ + PG +P G+ HR G R H Sbjct: 193 GPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYH 252 Query: 355 QRHWRPWPPGG 387 Q+H + PPGG Sbjct: 253 QQHHQGPPPGG 263
>DHR15_WHEAT (Q00742) Dehydrin Rab15| Length = 149 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = +2 Query: 101 FQGQQHGHPATRVDEYGNP 157 FQGQ H +PA RVDEYGNP Sbjct: 3 FQGQ-HDNPANRVDEYGNP 20
>DH11_GOSHI (P09442) Late embryogenesis abundant protein D-11 (LEA D-11)| Length = 145 Score = 33.5 bits (75), Expect = 0.24 Identities = 20/60 (33%), Positives = 22/60 (36%) Frame = +2 Query: 92 MAHFQGQQHGHPATRVDEYGNPXXXXXXXXXXXXXXXXXHFQGQQHGRTTTRLDEYGNPV 271 MAHFQ Q T+ D YGNP T R DEYGNP+ Sbjct: 1 MAHFQNQYSAPEVTQTDAYGNP---------------------------TRRTDEYGNPI 33
>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2| Length = 984 Score = 33.1 bits (74), Expect = 0.31 Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = +1 Query: 205 GPLPGPAARPHDDSPRRVRQ----PGDGRPRRWAGIHRRGSARPWA 330 GP P ARP P RQ PGDGRP +G R G ARP A Sbjct: 282 GPRPA-GARPAGPRPGGPRQGDSRPGDGRPAPRSGAPRPGGARPAA 326
>DHR21_ORYSA (P12253) Water stress-inducible protein Rab21| Length = 172 Score = 32.3 bits (72), Expect = 0.54 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +2 Query: 224 QHGRTTTRLDEYGNPV 271 QHG T+R+DEYGNPV Sbjct: 6 QHGHVTSRVDEYGNPV 21 Score = 32.3 bits (72), Expect = 0.54 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = +2 Query: 113 QHGHPATRVDEYGNP 157 QHGH +RVDEYGNP Sbjct: 6 QHGHVTSRVDEYGNP 20
>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)| Length = 225 Score = 31.6 bits (70), Expect = 0.91 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = +2 Query: 212 FQGQQHGRTTTRLDEYGNPV 271 +QGQQHGR +DEYGNPV Sbjct: 3 YQGQQHGR----VDEYGNPV 18 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/19 (73%), Positives = 15/19 (78%) Frame = +2 Query: 101 FQGQQHGHPATRVDEYGNP 157 +QGQQHG RVDEYGNP Sbjct: 3 YQGQQHG----RVDEYGNP 17
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 31.6 bits (70), Expect = 0.91 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 10/71 (14%) Frame = +1 Query: 205 GPLPGPAARPHDDSPRRVRQPGDGRPRRWAGI----------HRRGSARPWARWVRVYRH 354 G PGP P P+ + PG +P G+ HR G R H Sbjct: 185 GAGPGPKPGPGPGGPKGGKMPGGPKPGGGPGMGAPGGHPKPPHRGGGEPRGGRQHHAPYH 244 Query: 355 QRHWRPWPPGG 387 Q+H + PPGG Sbjct: 245 QQHHQGPPPGG 255
>DHN3_HORVU (P12948) Dehydrin DHN3 (B17)| Length = 161 Score = 31.2 bits (69), Expect = 1.2 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +2 Query: 113 QHGHPATRVDEYGNP 157 +HGH RVDEYGNP Sbjct: 2 EHGHATNRVDEYGNP 16 Score = 30.8 bits (68), Expect = 1.6 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +2 Query: 224 QHGRTTTRLDEYGNPV 271 +HG T R+DEYGNPV Sbjct: 2 EHGHATNRVDEYGNPV 17
>DH16D_ORYSA (P22913) Dehydrin Rab16D| Length = 151 Score = 31.2 bits (69), Expect = 1.2 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 101 FQGQQHGHPATRVDEYGNP 157 +QGQ GH ++R DE+GNP Sbjct: 3 YQGQHGGHASSRADEHGNP 21
>DH16C_ORYSA (P22912) Dehydrin Rab16C| Length = 164 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +2 Query: 92 MAHFQGQQHGHPATRVDEYGNP 157 M ++QGQ HG+ A RVD YGNP Sbjct: 1 MENYQGQ-HGYGADRVDVYGNP 21
>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog| Length = 1172 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = +1 Query: 325 WARWVRVYRH--QRHWRPWPP 381 W W+ V R QRHWRPW P Sbjct: 586 WQIWLAVERSRDQRHWRPWRP 606
>DH16B_ORYSA (P22911) Dehydrin Rab16B| Length = 164 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +2 Query: 92 MAHFQGQQHGHPATRVDEYGNP 157 M ++QGQ HG+ A RVD YGNP Sbjct: 1 MDNYQGQ-HGYGADRVDVYGNP 21
>CLPB_AGRT5 (Q7CU92) Chaperone clpB| Length = 874 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -1 Query: 373 MAASVVGAGRPVPSVPRAV-RSRAGGSQPNAVAG 275 +A SVVG G V +V +AV RSRAG PN G Sbjct: 568 LAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIG 601
>Y4FA_RHISN (P55439) Probable chemoreceptor y4fA (Methyl-accepting chemotaxis| protein) Length = 845 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -1 Query: 415 VGARASGTVTHLAAMAASVVGAGRPVPSVPRAVRSRAGGSQPNAVAGRH 269 +GA G + L + AA V+ P+ + + +R+ AGG AVA R+ Sbjct: 430 IGAMVLGVIIALVSGAALVLTLKGPIGEITQTMRNLAGGLLDTAVANRN 478
>CP007_HUMAN (Q9Y2B5) Protein C16orf7 (Protein ATP-BL)| Length = 438 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 7/55 (12%) Frame = +1 Query: 208 PLPGPAARPHDDSPRRVRQPGD-GRPRRWAGIH-----RRGSARPW-ARWVRVYR 351 P P A RP D P QPG G P W H R +R W + W R+ R Sbjct: 369 PEPSAAPRPQDSPPTPPLQPGPWGLPHPWGTPHLDCQTRTARSRTWSSSWGRLSR 423
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 30.0 bits (66), Expect = 2.7 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 442 PRASIAPSVVGARASGTVTHLAAMAASVVGAGRPV 338 P S+AP+++ + +SG +A AA G+G PV Sbjct: 1733 PSTSVAPAMISSASSGGAPSTSASAAVAPGSGTPV 1767
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 214 PGPAARPHDDSPRRVRQPGDGRPRR 288 PGP H++ RR ++PG GRPRR Sbjct: 810 PGPGR--HEEGGRRHQRPGPGRPRR 832
>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9| Length = 705 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +1 Query: 220 PAARPHDDSPRRVRQPGDGRPRRWAGIHRRGSARPW 327 PA+ +DD P R R P + + I +RG W Sbjct: 603 PASNSYDDIPNRARSPAESENSNFTSISQRGINPRW 638
>XKR8_PANTR (Q49LS0) XK-related protein 8| Length = 395 Score = 29.6 bits (65), Expect = 3.5 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -2 Query: 105 WKCAISSLHGLLAAAVSVCSWLWIESD 25 W + +L GL + A+ + SWLW+ +D Sbjct: 45 WAALVLALLGLASVALQLFSWLWLRAD 71
>XKR8_HUMAN (Q9H6D3) XK-related protein 8| Length = 395 Score = 29.6 bits (65), Expect = 3.5 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -2 Query: 105 WKCAISSLHGLLAAAVSVCSWLWIESD 25 W + +L GL + A+ + SWLW+ +D Sbjct: 45 WAALVLALLGLASVALQLFSWLWLRAD 71
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +1 Query: 208 PLPGPAARPHDDSPRRVRQPGDGRPR-RWAGIHRRGSARPWA 330 P P P+A P SPR G G PR G+ R G RP A Sbjct: 196 PAPRPSASPSSMSPRPGGAVGGGGPRPPRTGVPRPGGGRPGA 237
>DHR25_ORYSA (P30287) Dehydrin Rab25 (Drought-resistant protein 1) (rDRP1)| Length = 228 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +2 Query: 92 MAHFQGQQHGHPATRVDEYGNP 157 MA +GHP RVD+YGNP Sbjct: 1 MAEHATGVYGHPYPRVDQYGNP 22
>CN102_HUMAN (Q9H7Z3) Protein C14orf102| Length = 1164 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Frame = +1 Query: 325 WARWVRVYRH--QRHWRPWPP 381 W W+ R QRHWRPW P Sbjct: 577 WQIWLAAERSRDQRHWRPWRP 597
>NODD_RHILE (P16556) Nodulation protein D| Length = 322 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/31 (29%), Positives = 13/31 (41%) Frame = +1 Query: 286 RWAGIHRRGSARPWARWVRVYRHQRHWRPWP 378 +W +H W R + + RHW P P Sbjct: 276 QWPALHNSDPGNIWMREIMIQEASRHWNPRP 306
>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1717 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = -1 Query: 439 RASIAPSVVGARASGTVTHLAAMAASVVGAGRPVPSVPRAVRSRAGGSQPNA 284 RAS AP+ A A+ AA+AA+ G P P++ A S GS A Sbjct: 20 RAS-APAAAAAAAAAAAAAAAALAAAAGGGRSPEPALTPAAPSGGNGSGSGA 70
>ECP40_DAUCA (Q07322) Embryogenic cell protein 40 (ECP40)| Length = 306 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%) Frame = +2 Query: 113 QHGHPATRVDEYGNPXXXXXXXXXXXXXXXXXH-FQGQQHG 232 QHG+P DEYGNP H G HG Sbjct: 17 QHGNPVQLTDEYGNPVHITGVATTGATTGHHDHGVGGASHG 57
>PROQ_SHIFL (Q83RJ2) ProP effector| Length = 232 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 223 AARPHDDSPRRVRQPGDGRPRRWAGIHRRGSAR 321 AA +D+PRR R+P PRR G R+ A+ Sbjct: 127 AAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQ 159
>PROQ_ECO57 (Q8XCM4) ProP effector| Length = 232 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 223 AARPHDDSPRRVRQPGDGRPRRWAGIHRRGSAR 321 AA +D+PRR R+P PRR G R+ A+ Sbjct: 127 AAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQ 159
>PAX1_HUMAN (P15863) Paired box protein Pax-1 (HUP48)| Length = 440 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Frame = +1 Query: 205 GPLPGPAARP------HDDSPRRVRQPGDGRPRRWAGIHRRGSARPWAR 333 G LP PAARP + D P R R P PR A R A P A+ Sbjct: 334 GSLPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRA--RRERQADPGAQ 380
>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 478 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 6/44 (13%) Frame = +1 Query: 217 GPAARPHDDSPRRVRQPGDGRPRRWAGIHR------RGSARPWA 330 GP RP P + PG G WA + G+A PWA Sbjct: 374 GPETRPRQVPPSARQDPGPGTKAPWATASQSTPPPSTGTAAPWA 417
>RS3_BURS3 (Q39KG1) 30S ribosomal protein S3| Length = 266 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 9/38 (23%) Frame = +1 Query: 238 DDSPRRVRQPGDGRPRR---------WAGIHRRGSARP 324 D PRR +PGD RPRR G RRG+ +P Sbjct: 222 DKRPRRNARPGDRRPRRDGEGGAPGARRGAPRRGAGKP 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,755,231 Number of Sequences: 219361 Number of extensions: 931025 Number of successful extensions: 3883 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3868 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
