>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  145 bits (73), Expect = 1e-31
 Identities = 85/89 (95%)
 Strand = Plus / Minus

                                                                          
Query: 201    tcggtggggccgtcgagatccgccgcccctggccggccccggaccggatggacctctccg 260
              |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 154308 tcggtgcggccgtcgagatccgccgcccctggccggcatcggaccggatggacctctccg 154249

                                           
Query: 261    tcacgctggccctgagctcccccacggag 289
              |||||||||||||||| ||||||||||||
Sbjct: 154248 tcacgctggccctgagatcccccacggag 154220



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                                
Query: 334    gacttattcaagagacgacgacgcgaaactcgagaccacgcgtgcacggc 383
              |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 153928 gacttattcaagagacgacgacgcgaaactcgagaccatgcgtgcacggc 153879



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                   
Query: 149    cgcgcgtggacgccaccgccgtccccgttctaccccgccgcgccgcccctgct 201
              ||||||||||| ||||||||||||  |||||||||||||||||||||||||||
Sbjct: 154377 cgcgcgtggacaccaccgccgtccttgttctaccccgccgcgccgcccctgct 154325



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                                
Query: 384    tgttgggtgttctcaaa-ggcatgaagatctgaaagagcgcctctcgcgg 432
              |||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct: 153745 tgttgggtattctcaaaaggcatgaagatctgaaagagcgtctctcgcgg 153696



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                             
Query: 288    agcacggggagcagctaaggaggcgccagcactcgttatcggaactg 334
              |||||||||||||||| ||| |||| || ||||||||||||||||||
Sbjct: 154066 agcacggggagcagctgaggcggcggcaacactcgttatcggaactg 154020

>gb|BT024183.1| Zea mays clone EL01N0417B02 mRNA sequence
          Length = 1503

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 91/106 (85%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                       
Query: 342 caagagacgacgacgcgaaactcgagaccacgcgtgcacggctgttgggtgttctcaaa- 400
           |||| |||||||| || ||||| |||||||| |||||| ||||||    | | |||||| 
Sbjct: 346 caagggacgacgatgcaaaacttgagaccacacgtgcaaggctgtcaaatatcctcaaaa 405

                                                         
Query: 401 ggcatgaagatctgaaagagcgcctctcgcgggattctgataagct 446
           ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 406 ggcatgaagatctgaaagagcgcctttcacgggattctgataagct 451

>ref|XM_471554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 951

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 398 aaaggcatgaagatctgaaagagcgcctctcgcgggattctgataa 443
           |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 68  aaaggcatgaagatttgaaagagcgcctctcacgggattctgataa 113

>dbj|AK100448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090M19, full
           insert sequence
          Length = 1462

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 398 aaaggcatgaagatctgaaagagcgcctctcgcgggattctgataa 443
           |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 324 aaaggcatgaagatttgaaagagcgcctctcacgggattctgataa 369

>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
              complete sequence
          Length = 185211

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                             
Query: 398    aaaggcatgaagatctgaaagagcgcctctc 428
              |||||||||||||| ||||||||||||||||
Sbjct: 103900 aaaggcatgaagatttgaaagagcgcctctc 103870

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 398      aaaggcatgaagatctgaaagagcgcctctc 428
                |||||||||||||| ||||||||||||||||
Sbjct: 12279016 aaaggcatgaagatttgaaagagcgcctctc 12278986

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 16      ccggcggcggcggattccccacc 38
               |||||||||||||||||||||||
Sbjct: 2043383 ccggcggcggcggattccccacc 2043405

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 5        tccccctcatcccggcggcggcgg 28
                |||||||| |||||||||||||||
Sbjct: 12371590 tccccctcctcccggcggcggcgg 12371613

>gb|AF294683.2| Trachyphonus usambiro recombination activating protein 1 (RAG-1)
            gene, partial cds
          Length = 1914

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 398  aaaggcatgaagatctgaaagagc 421
            |||||||||||| |||||||||||
Sbjct: 1571 aaaggcatgaagctctgaaagagc 1594

>ref|XM_798952.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507667.20) partial mRNA
          Length = 3114

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  aaagagcgcctctcgcggga 434
            ||||||||||||||||||||
Sbjct: 1183 aaagagcgcctctcgcggga 1202

>ref|XM_797607.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506403.9) partial mRNA
          Length = 1613

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  aaagagcgcctctcgcggga 434
            ||||||||||||||||||||
Sbjct: 1183 aaagagcgcctctcgcggga 1202

>gb|AC098716.2| Mus musculus BAC clone RP23-2F19 from 9, complete sequence
          Length = 214654

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   ctcaaaggcatgaagatctg 414
             ||||||||||||||||||||
Sbjct: 84760 ctcaaaggcatgaagatctg 84741

>emb|Z99716.4|HS250D10 Human DNA sequence from clone CTA-250D10 on chromosome 22 Contains the
              genes for SREBF2 (sterol regulatory element binding
              transcription factor 2), NAGA
              (alpha-N-acetylgalactosaminidase), a gene similar to
              neuronal-specific septin 3, a pseudogene similar to ANT2
              (adenine nucleotide translocator 2), 2 mRNAs based on ESTs,
              a genomic marker D22S1178, a CA repeat polymorpism, ESTs
              and a CpG island, complete sequence
          Length = 220895

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    ccccgccgcgccgcccctgc 200
              ||||||||||||||||||||
Sbjct: 120157 ccccgccgcgccgcccctgc 120138

>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             3/8
          Length = 347625

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   gcgcgtggacgccaccgccg 169
             ||||||||||||||||||||
Sbjct: 94331 gcgcgtggacgccaccgccg 94312

>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     tccccctcatcccggcggcggcgg 28
             |||||||| |||||||||||||||
Sbjct: 30608 tccccctcctcccggcggcggcgg 30631

>emb|CR616689.1| full-length cDNA clone CS0DF017YJ06 of Fetal brain of Homo sapiens
           (human)
          Length = 1866

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 181 ccccgccgcgccgcccctgc 200
           ||||||||||||||||||||
Sbjct: 73  ccccgccgcgccgcccctgc 54

>emb|CR604795.1| full-length cDNA clone CS0DF008YJ19 of Fetal brain of Homo sapiens
           (human)
          Length = 1450

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 181 ccccgccgcgccgcccctgc 200
           ||||||||||||||||||||
Sbjct: 106 ccccgccgcgccgcccctgc 87

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 5        tccccctcatcccggcggcggcgg 28
                |||||||| |||||||||||||||
Sbjct: 12368353 tccccctcctcccggcggcggcgg 12368376

>gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 198332

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   gctgttgggtgttctcaaag 401
             ||||||||||||||||||||
Sbjct: 40178 gctgttgggtgttctcaaag 40197

>gb|AC153022.1| Mus musculus 6 BAC RP23-115M13 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201949

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   tcaaaggcatgaagatctga 415
             ||||||||||||||||||||
Sbjct: 79426 tcaaaggcatgaagatctga 79407

>gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 189395

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    gctgttgggtgttctcaaag 401
              ||||||||||||||||||||
Sbjct: 113172 gctgttgggtgttctcaaag 113153

>gb|M60598.1|WHTDHDPD17 T.aestivum dihydrodipicolinate synthase (DHDPS) mRNA, complete cds,
           clone pDA17
          Length = 1458

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 145 ctcgcgcgcgtggacgccaccgccgtccccgttctaccccgccg 188
           ||||||||||| | ||||  |||||| |||||||| ||||||||
Sbjct: 144 ctcgcgcgcgtcgccgccgtcgccgttcccgttcttccccgccg 187

>dbj|AB038619.1| TT virus complete genome, isolate:TTVsan-IR1031
          Length = 3795

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  cccggcggcggcggattccc 34
           ||||||||||||||||||||
Sbjct: 516 cccggcggcggcggattccc 497


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,898,693
Number of Sequences: 3902068
Number of extensions: 2898693
Number of successful extensions: 59687
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59437
Number of HSP's gapped (non-prelim): 250
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)