Clone Information

BLAST Search Result

Clone Name	bast26f02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CPO_DROME (Q01617) Protein couch potato	36	0.043
2	CDKL3_HUMAN (Q8IVW4) Cyclin-dependent kinase-like 3 (EC 2.7.11.2...	34	0.22
3	PCC6_MYCTU (P63407) Probable propionyl-CoA carboxylase beta chai...	31	1.4
4	PCC6_MYCBO (P63408) Probable propionyl-CoA carboxylase beta chai...	31	1.4
5	Y2294_MYCBO (P64968) Hypothetical protein Mb2294	31	1.8
6	Y2271_MYCTU (P64967) Hypothetical protein Rv2271/MT2332	31	1.8
7	CSKI2_XENLA (Q6DD51) Caskin-2	31	1.8
8	RL15_PSEU2 (Q4ZMR3) 50S ribosomal protein L15	31	1.8
9	RL15_PSESM (Q889V2) 50S ribosomal protein L15	31	1.8
10	RL15_PSEPK (Q88QL6) 50S ribosomal protein L15	31	1.8
11	RL15_PSEF5 (Q4K552) 50S ribosomal protein L15	31	1.8
12	RL15_PSEAE (Q9HWF4) 50S ribosomal protein L15	31	1.8
13	RL15_PSE14 (Q48D55) 50S ribosomal protein L15	31	1.8
14	CTF1_RAT (Q63086) Cardiotrophin-1 (CT-1)	30	2.4
15	ALR_RALSO (Q8XZM4) Alanine racemase (EC 5.1.1.1)	30	2.4
16	PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B me...	30	2.4
17	ALGJ_PSEAE (Q51393) Alginate biosynthesis protein algJ precursor	30	4.1
18	TILS_CORGL (Q6M2E8) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR...	30	4.1
19	ANKS3_MOUSE (Q9CZK6) Ankyrin repeat and SAM domain-containing pr...	30	4.1
20	CDKL3_MACFA (Q4R8T9) Cyclin-dependent kinase-like 3 (EC 2.7.11.22)	30	4.1
21	WHRN_HUMAN (Q9P202) Whirlin (Autosomal recessive deafness type 3...	30	4.1
22	SEY1_YARLI (Q6C3B0) Protein SEY1	29	5.3
23	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	29	5.3
24	TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (R...	29	5.3
25	QUEA_RHOPA (Q6N6L0) S-adenosylmethionine:tRNA ribosyltransferase...	29	5.3
26	ANKS3_RAT (Q5M9H0) Ankyrin repeat and SAM domain-containing prot...	29	5.3
27	DCAK1_HUMAN (O15075) Serine/threonine-protein kinase DCAMKL1 (EC...	29	5.3
28	ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi...	29	6.9
29	2A5I_ARATH (Q93YV6) Serine/threonine protein phosphatase 2A 57 k...	29	6.9
30	SOMA1_XENLA (P12855) Somatotropin A precursor (Growth hormone A)...	29	6.9
31	ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (1...	29	6.9
32	TIM50_USTMA (Q4PEW9) Import inner membrane translocase subunit T...	29	6.9
33	SUS_DROME (P22293) Protein suppressor of sable	28	9.1
34	MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)	28	9.1
35	Y1553_MYCBO (P64870) Hypothetical protein Mb1553c	28	9.1
36	Y1526_MYCTU (P64869) Hypothetical protein Rv1526c/MT1577	28	9.1
37	PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacema...	28	9.1
38	ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (1...	28	9.1
39	ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (1...	28	9.1
40	FLO1_YEAST (P32768) Flocculation protein FLO1 precursor (Floccul...	28	9.1
41	IRF5_HUMAN (Q13568) Interferon regulatory factor 5 (IRF-5)	28	9.1
42	DCAK1_MOUSE (Q9JLM8) Serine/threonine-protein kinase DCAMKL1 (EC...	28	9.1
43	JIP2_HUMAN (Q13387) C-jun-amino-terminal kinase-interacting prot...	28	9.1

>CPO_DROME (Q01617) Protein couch potato|
          Length = 738

 Score = 36.2 bits (82), Expect = 0.043
 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +3

Query: 3   HITNHNSERTHERTYVHLAITVTRMAMPSNLAQSLPDSPAGDLRPAALLSKMASRGRRPS 182
           H +N+NS  +       + I  +  A+P+    SLPDSPA +       S  AS    PS
Sbjct: 307 HNSNNNSNTSAGAASAAVPIATSVAAVPTT-GGSLPDSPAHESHSHESNSATASAPTTPS 365

Query: 183 PL--VTSAVPTDEAPANMTPGSVVGDMERGTLA 275
           P   VTSA PT  A A     +       GT A
Sbjct: 366 PAGSVTSAAPTATATAAAAGSAAATAAATGTPA 398

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>CDKL3_HUMAN (Q8IVW4) Cyclin-dependent kinase-like 3 (EC 2.7.11.22)|
           (Serine/threonine protein kinase NKIAMRE)
          Length = 592

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +3

Query: 81  MPSNLAQSLPDSPAGDLRPAALLSKMASRGRRPSPLVTSAVPTDEAPANMTPGSVVGDME 260
           M +NL+ +L         P+  L++ A + R  S  +   +P         PG +   ME
Sbjct: 441 MAANLSSNL-------FHPSVRLTERAKKRRTSSQSIGQVMPNSRQE---DPGPIQSQME 490

Query: 261 RGTLAEKTGRSDGQLTSRWRELHGS 335
           +G   E+TG SD       R+L+ S
Sbjct: 491 KGIFNERTGHSDQMANENKRKLNFS 515

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>PCC6_MYCTU (P63407) Probable propionyl-CoA carboxylase beta chain 6 (EC|
           6.4.1.3) (PCCase) (Propanoyl-CoA:carbon dioxide ligase)
          Length = 473

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 120 AGDLRPAALLSKMASRGRRPSPLVTSAV----PTDEAPANMTPGSVVGDMERGTLAEKTG 287
           AGD    ALL + + R     P+VT+ +    P DE  AN  P  VVG      L   +G
Sbjct: 225 AGDTDIHALLPESSRRAYDVRPIVTAILDADTPFDEFQANWAPSMVVG------LGRLSG 278

Query: 288 RSDGQLTSRWRELHG 332
           R+ G L +    L G
Sbjct: 279 RTVGVLANNPLRLGG 293

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>PCC6_MYCBO (P63408) Probable propionyl-CoA carboxylase beta chain 6 (EC|
           6.4.1.3) (PCCase) (Propanoyl-CoA:carbon dioxide ligase)
          Length = 473

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 120 AGDLRPAALLSKMASRGRRPSPLVTSAV----PTDEAPANMTPGSVVGDMERGTLAEKTG 287
           AGD    ALL + + R     P+VT+ +    P DE  AN  P  VVG      L   +G
Sbjct: 225 AGDTDIHALLPESSRRAYDVRPIVTAILDADTPFDEFQANWAPSMVVG------LGRLSG 278

Query: 288 RSDGQLTSRWRELHG 332
           R+ G L +    L G
Sbjct: 279 RTVGVLANNPLRLGG 293

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>Y2294_MYCBO (P64968) Hypothetical protein Mb2294|
          Length = 99

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 167 TARHLREQRRRTQVPGRAVREGLGEVGGHGHSCYCDCEM 51
           TARH +   +  ++    + EGL E GG     YCDCE+
Sbjct: 55  TARHAQRWAQSHRIEWETLAEGLQEFGG-----YCDCEI 88

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>Y2271_MYCTU (P64967) Hypothetical protein Rv2271/MT2332|
          Length = 99

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 167 TARHLREQRRRTQVPGRAVREGLGEVGGHGHSCYCDCEM 51
           TARH +   +  ++    + EGL E GG     YCDCE+
Sbjct: 55  TARHAQRWAQSHRIEWETLAEGLQEFGG-----YCDCEI 88

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>CSKI2_XENLA (Q6DD51) Caskin-2|
          Length = 1205

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 23  RAHTRTYVRASRNHSNKNGHALQPR-PVPPGQPC---RGLASGGAALEDGEP 166
           R H     +  +NH   NG  +QP  P PP +P    R L++   AL DGEP
Sbjct: 708 RNHPEGTDQILQNHWVPNGCLIQPEPPAPPPKPALKKRSLSACRYALSDGEP 759

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>RL15_PSEU2 (Q4ZMR3) 50S ribosomal protein L15|
          Length = 144

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 143 RRRTQVPGRAVREGLGEVGGHGH 75
           RR    PGR +  GLG+ GG GH
Sbjct: 13  RREKHRPGRGIGSGLGKTGGRGH 35

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>RL15_PSESM (Q889V2) 50S ribosomal protein L15|
          Length = 144

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 143 RRRTQVPGRAVREGLGEVGGHGH 75
           RR    PGR +  GLG+ GG GH
Sbjct: 13  RREKHRPGRGIGSGLGKTGGRGH 35

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>RL15_PSEPK (Q88QL6) 50S ribosomal protein L15|
          Length = 144

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 143 RRRTQVPGRAVREGLGEVGGHGH 75
           RR    PGR +  GLG+ GG GH
Sbjct: 13  RREKHRPGRGIGSGLGKTGGRGH 35

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>RL15_PSEF5 (Q4K552) 50S ribosomal protein L15|
          Length = 144

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 143 RRRTQVPGRAVREGLGEVGGHGH 75
           RR    PGR +  GLG+ GG GH
Sbjct: 13  RREKHRPGRGIGSGLGKTGGRGH 35

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>RL15_PSEAE (Q9HWF4) 50S ribosomal protein L15|
          Length = 144

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 143 RRRTQVPGRAVREGLGEVGGHGH 75
           RR    PGR +  GLG+ GG GH
Sbjct: 13  RREKHRPGRGIGSGLGKTGGRGH 35

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>RL15_PSE14 (Q48D55) 50S ribosomal protein L15|
          Length = 144

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 143 RRRTQVPGRAVREGLGEVGGHGH 75
           RR    PGR +  GLG+ GG GH
Sbjct: 13  RREKHRPGRGIGSGLGKTGGRGH 35

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>CTF1_RAT (Q63086) Cardiotrophin-1 (CT-1)|
          Length = 203

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 159 ASRGRRPSPLVTSAVPTDEAPANMTPGSVVGDMERGTLAEKTGRSDGQL 305
           A+RG  P P+ TSA+ T  + A +    V+G    G   E   R++G L
Sbjct: 146 AARGPVPEPVATSALFTSNSAAGVFSAKVLGLHVCGLYGEWVSRTEGDL 194

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>ALR_RALSO (Q8XZM4) Alanine racemase (EC 5.1.1.1)|
          Length = 375

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 21/74 (28%), Positives = 29/74 (39%)
 Frame = -3

Query: 265 PRSMSPTTEPGVMLAGASSVGTAEVTSGDGRRPRLAIFESSAAGRKSPAGLSGRDWARLE 86
           PR+      PGV+L GAS  G A    G G  P + +     A +    G +    +R E
Sbjct: 199 PRAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLKSELIAVQDLQPGATVGYGSRFE 258

Query: 85  GMAILVTVIARCTY 44
               +   I  C Y
Sbjct: 259 AEQPMRIGIVACGY 272

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>PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B member 1 (Protein|
            LL5-alpha)
          Length = 1371

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 31/158 (19%)
 Frame = +3

Query: 60   ITVTRMAMPSNLAQSLPDSPAGDLRPAALLSKMASR------GRRPSPLV-------TSA 200
            + V R  M S+ A  LP + +G L  ++  S  +S+      GR PSP         TS+
Sbjct: 963  LQVYRSKMDSDAASPLPRTRSGPLPSSSGSSSSSSQLSVATLGRSPSPKSALLAQNGTSS 1022

Query: 201  VPTDEAP-----------ANMTPGSVVGDMERGTLAEKTGRSDGQLTSRWRELHGSNDWQ 347
            +P + A            A    G  V + +R  LAE   ++  +   +W  LHG+  + 
Sbjct: 1023 LPRNLAATLQDIETKRQLALQQKGHQVIEEQRRRLAELKQKAAAEAQCQWDALHGAGPFS 1082

Query: 348  GLLDPIDTVLRXELIRY-------GEFAQACYDSFDYD 440
                    ++   ++ +       GE  +  YD+   +
Sbjct: 1083 AGPSGFPALMHHSILHHLPAGRERGEEGEHAYDTLSLE 1120

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>ALGJ_PSEAE (Q51393) Alginate biosynthesis protein algJ precursor|
          Length = 391

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 286 PVFSARVPRS---MSPTTEPGVMLAGASSVGTAEVTSGDGRRPRLAIFESS 143
           P+F   +PR       TTE    L G    G  +   GD ++PRLA+  +S
Sbjct: 247 PLFDELLPRPEQLQQRTTEAAPALPGGQQSGAGDDLFGDSQQPRLALVGTS 297

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>TILS_CORGL (Q6M2E8) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 314

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -3

Query: 238 PGVMLAGASSVGTAEVTSGDGRRPRLAI---FESSAAGRKSPAGLSGR---DWARLEGMA 77
           PG+ LA   +V  AEV  GD  + RL     F  + AG   P GL  R   D+ R EG+A
Sbjct: 212 PGLALAARRAVEDAEVVEGDVEKRRLEWQDGFPVTLAG--EPTGLRRRMLADFLRGEGIA 269

Query: 76  I 74
           +
Sbjct: 270 V 270

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>ANKS3_MOUSE (Q9CZK6) Ankyrin repeat and SAM domain-containing protein 3|
          Length = 655

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 11  KSQFRAHTRTYVRASRNHSNKNGH---ALQPRPVPPGQP 118
           KS  R  TR+Y++    H N +GH   +  P  +P  +P
Sbjct: 378 KSSVRKQTRSYLKNKSRHGNSDGHWPSSTGPASIPGSEP 416

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>CDKL3_MACFA (Q4R8T9) Cyclin-dependent kinase-like 3 (EC 2.7.11.22)|
          Length = 590

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 135 PAALLSKMASRGRRPSPLVTSAVPTDEAPANMTPGSVVGDMERGTLAEKTGRSDGQLTSR 314
           P+  L++ A + R  S  +   +P         PG +   M +G   E+TG SD      
Sbjct: 452 PSVRLTERAKKRRTSSQSIGQVMPNSRQE---DPGPIQSQMGKGIFNERTGHSDQMSNEN 508

Query: 315 WRELHGS 335
            R+L+ S
Sbjct: 509 KRKLNFS 515

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>WHRN_HUMAN (Q9P202) Whirlin (Autosomal recessive deafness type 31 protein)|
          Length = 907

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +3

Query: 90  NLAQSLPDSPAGDLRPAALLSKMASRGRRPSPLVTSAVPTDEAPANMTPGSVVGDMERGT 269
           N  ++LP +     R A+ LS+++  G+  S    S V   EA A+  PG       RG 
Sbjct: 736 NEVRALPQT-----RTASTLSQLSDSGQTLSE--DSGVDAGEAEAS-APG-------RGR 780

Query: 270 LAEKT-GRSDGQLTSRWRELHGSNDWQGLLDPIDTVLR 380
            +  T  RS  +L    R   G+N   GLL+P  T++R
Sbjct: 781 QSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVR 818

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>SEY1_YARLI (Q6C3B0) Protein SEY1|
          Length = 938

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 177 PSPLVTSAVPTDEAPANMTPGSVVG 251
           P+P  + AVPT +  A  TPGS  G
Sbjct: 138 PTPAASHAVPTSQKSAKSTPGSYAG 162

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 87  SNLAQSLPDSPAGDLRPAALLSKMA-SRGRRPSPLVTS-AVPTDEAPANMTPG 239
           SN A S+P  P G   P     + A S GR+P PL +S AV    AP    PG
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397

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>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger|
           protein 92) (BIA1 protein)
          Length = 468

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 25/71 (35%), Positives = 29/71 (40%)
 Frame = +3

Query: 114 SPAGDLRPAALLSKMASRGRRPSPLVTSAVPTDEAPANMTPGSVVGDMERGTLAEKTGRS 293
           SP  +LRP   L+KMA   RR  P   S VP    PA+  P +     E   L     RS
Sbjct: 60  SPQRNLRPNRPLAKMAEMARRLHP--PSPVPQGVCPAHREPLAAFCGDELRLLCAACERS 117

Query: 294 DGQLTSRWREL 326
                 R R L
Sbjct: 118 GEHWAHRVRPL 128

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>QUEA_RHOPA (Q6N6L0) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 360

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = +3

Query: 213 EAPANMTPGS--VVGDMERGTLAEKTGRSDGQ------LTSRWRELHGSNDWQGLLDPID 368
           + PA + PG   VV D  R   A+ TGR  G+        +  + L G+  WQ L+ P  
Sbjct: 44  DLPALLAPGDQLVVNDT-RVIAAQLTGRRIGRGLEPKIEATLIKRLDGAR-WQALVKPAK 101

Query: 369 TVLRXELIRYGEFAQAC 419
            +L  +++R+G   + C
Sbjct: 102 KLLPGDVVRFGHDGRVC 118

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>ANKS3_RAT (Q5M9H0) Ankyrin repeat and SAM domain-containing protein 3|
          Length = 663

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 11  KSQFRAHTRTYVRASRNHSNKNGH 82
           KS  R  TRTY++    H+N +GH
Sbjct: 378 KSSVRKQTRTYLKNKSRHNNSDGH 401

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>DCAK1_HUMAN (O15075) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
          Length = 740

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = +3

Query: 150 SKMASRGRR-----PSPLVTSAVPTDEAPANMTPGSVVGDMERGTLAEKTGRSDGQLTSR 314
           +K+AS  RR     P P   S  P   +  N TPGS +     G     +  S G L  +
Sbjct: 285 TKIASSSRRSTTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQ 344

Query: 315 WRELHGSN 338
               HG +
Sbjct: 345 RSSQHGGS 352

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>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 12  NHNSERTHERTYVHLAITVTRMAMPSNLAQSLPDSPAGDLRPAALLSKMASRGRRPSPLV 191
           +H S R+  R           +A+P+    S+  +PAG      L +  AS    P+PLV
Sbjct: 250 SHPSSRSSSRENSGSGSVGVPIAVPTPSPPSVFPAPAGSAGTPPLPATSASA---PAPLV 306

Query: 192 TSAVPTDEAP 221
            + VP+  AP
Sbjct: 307 PATVPSSTAP 316

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>2A5I_ARATH (Q93YV6) Serine/threonine protein phosphatase 2A 57 kDa regulatory|
           subunit B' iota isoform (PP2A, B' subunit, iota isoform)
           (AtB' iota)
          Length = 500

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = -3

Query: 277 SARVPRSMSPTTEPGVMLAGASSVGTAEVTSGDGRRPRLAIFESSAAGRKSPAGLSGRDW 98
           S  + RS S      V  +G S  G+  V S  G+R   A+F +S      P  +  +D 
Sbjct: 18  SGELNRSSSGPVSSPVQRSGTSGGGSGPVRSNSGKRMSSAVFPASVVAGIEPL-VPFKDV 76

Query: 97  ARLEGMAILVTVIARC 50
              E + + V+ ++ C
Sbjct: 77  PSSEKLNLFVSKVSLC 92

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>SOMA1_XENLA (P12855) Somatotropin A precursor (Growth hormone A) (GH-A)|
          Length = 214

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  FRAHTRTYVRASRNHSNKNGHAL 88
           +R + RTY+   + HSNKN H +
Sbjct: 53  YRDYERTYITDEQRHSNKNSHVV 75

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>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +3

Query: 51  HLAITVTRMAMPSNLAQSLPDSP---AGDLRPAALLSKMASRGR---RPSPLVTSAVPTD 212
           +LA T+ R   P+ +A     SP     D RP + L+  + R R   RP P   +  P +
Sbjct: 309 NLAKTLERPEPPAGMASPPGRSPHRLPKDQRPKSALAGASKRKRANPRPRPQTQTQAPAE 368

Query: 213 EAP 221
           EAP
Sbjct: 369 EAP 371

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>TIM50_USTMA (Q4PEW9) Import inner membrane translocase subunit TIM50,|
           mitochondrial precursor
          Length = 493

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +2

Query: 89  QPRPVPPGQPCRGLASGGAALEDGEPWATPVSASHL---RGADRRSAGQ 226
           QP+P PP +P   LA  G++L D +  ATP+++  +     A R  AG+
Sbjct: 74  QPQPQPPAEP--ELARKGSSLFDIDTSATPLASQLIEAEEAASRSDAGK 120

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>SUS_DROME (P22293) Protein suppressor of sable|
          Length = 1325

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 11  KSQFRAHTRTY-VRASRNHSNKNGHALQPRPVP-PG 112
           ++ F+AH+    V +S  +SN N H+L P P P PG
Sbjct: 775 RNPFKAHSGDGDVDSSNENSNSNSHSLTPTPTPEPG 810

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>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)|
          Length = 982

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +3

Query: 84  PSNLAQSLPDSPAGDLRPAALLSKMA----SRGRRPSPLVTSAVPTDEAPANMTPGSVVG 251
           PS+ +   P S   ++ P + +S  A    SR    SP  T+   T  +PA  T GS+  
Sbjct: 275 PSHCSVKSPVSSPNNVTPRSSVSSPANINNSRCSVSSPSNTNNRSTLSSPAASTVGSICS 334

Query: 252 DMERGTLAEKTGRSDGQLTSR 314
            +        +G S G  TSR
Sbjct: 335 PVNNAFSYTASGTSAGSSTSR 355

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>Y1553_MYCBO (P64870) Hypothetical protein Mb1553c|
          Length = 426

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 138 AALLSKMASRGRRPSPLVTSAVPTDEAPANMTPGS 242
           AA   ++++R  RP+  VT+A    EA A  TPGS
Sbjct: 384 AARAREISTRMTRPTAAVTAAADLLEATARQTPGS 418

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>Y1526_MYCTU (P64869) Hypothetical protein Rv1526c/MT1577|
          Length = 426

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 138 AALLSKMASRGRRPSPLVTSAVPTDEAPANMTPGS 242
           AA   ++++R  RP+  VT+A    EA A  TPGS
Sbjct: 384 AARAREISTRMTRPTAAVTAAADLLEATARQTPGS 418

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>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein|
           Rigui) (hPER)
          Length = 1290

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = +2

Query: 23  RAHTRTYVRASRNHSNKNGHA----LQPRPVPPGQP 118
           R H R+  + SR+H N    A      P PVPP  P
Sbjct: 832 RHHCRSKAKRSRHHQNPRAEAPCYVSHPSPVPPSTP 867

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>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +3

Query: 51  HLAITVTRMAMPSNLAQSLPDSP---AGDLRPAALLSKMASRGR---RPSPLVTSAVPTD 212
           +LA T+ R   P+ +A     SP     D RP + L+  + R R   RP P   +  P +
Sbjct: 309 NLAKTLERPEPPAGMASPPGRSPHRLPKDQRPKSALAGASKRKRANPRPIPQTQTQAPAE 368

Query: 213 EAP 221
           EAP
Sbjct: 369 EAP 371

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>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +3

Query: 51  HLAITVTRMAMPSNLAQSLPDSP---AGDLRPAALLSKMASRGR---RPSPLVTSAVPTD 212
           +LA T+ R   P+ +A     SP     D RP + L+  + R R   RP P   +  P +
Sbjct: 309 NLAKTLERPEPPAGMASPPGRSPHRLPKDQRPKSALAGASKRKRANPRPIPQTQTQAPAE 368

Query: 213 EAP 221
           EAP
Sbjct: 369 EAP 371

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>FLO1_YEAST (P32768) Flocculation protein FLO1 precursor (Flocculin-1)|
          Length = 1537

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 114  SPAGDLRPAALLSKMASRGRRPS----PLVTSAVPTDEAPANMTPGSVVGDMERGTLAEK 281
            S AG +  ++ +S  +S+    S    PLVTSA  + E  +++ P +     E+ TL   
Sbjct: 1179 SSAGSVSSSSFISSESSKSPTYSSSSLPLVTSATTSQETASSLPPATTTKTSEQTTLVTV 1238

Query: 282  T 284
            T
Sbjct: 1239 T 1239

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>IRF5_HUMAN (Q13568) Interferon regulatory factor 5 (IRF-5)|
          Length = 498

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 343 QSLLPWSSRHRDVSWPSERPVFSARVPRSMSPTTEPGVML 224
           Q +LP  S   DV WP      + R P    PT +P V+L
Sbjct: 151 QRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTLQPPVVL 190

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>DCAK1_MOUSE (Q9JLM8) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
          Length = 756

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = +3

Query: 150 SKMASRGRR-----PSPLVTSAVPTDEAPANMTPGSVVGDMERGTLAEKTGRSDGQLTSR 314
           +K+AS  RR     P P   S  P   +  N TPGS +     G     +  S G L  +
Sbjct: 285 TKIASASRRGTTKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQ 344

Query: 315 WRELHGSN 338
               HG +
Sbjct: 345 RISQHGGS 352

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>JIP2_HUMAN (Q13387) C-jun-amino-terminal kinase-interacting protein 2|
           (JNK-interacting protein 2) (JIP-2) (JNK MAP kinase
           scaffold protein 2) (Islet-brain-2) (IB-2)
           (Mitogen-activated protein kinase 8-interacting protein
           2)
          Length = 824

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 77  GHALQPRPVPPGQPCRGLASGGAALEDGEPWA 172
           G  L P P PPG+P     +GGAA +  +P A
Sbjct: 370 GQCLSPAPRPPGEPVS--PAGGAAQDSQDPEA 399


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,325,489
Number of Sequences: 219361
Number of extensions: 1015295
Number of successful extensions: 5142
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5137
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result