>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +2

Query: 311 LIHGLPDEVALLCLARVPRQYHNALRRVSRGW 406
           LI GLP+++A LCL R+P  YH   R VS  W
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSW 59

>YETS2_MOUSE (Q3TUF7) YEATS domain-containing protein 2|
          Length = 1407

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 272 RASGNALLQR*MIILAGGRRTDLRGRGSGWGSAEREREGIGALPATRGAGGG-EHL 108
           RA+ NA LQ      AGG  +   G GSG G       G G  P+T G GGG +HL
Sbjct: 782 RATNNANLQSGSAA-AGGSGSSGAGGGSGGGGGS----GAGGTPSTSGPGGGPQHL 832

>COFE_HALSA (Q9HME1) F420-0:gamma-glutamyl ligase (EC 6.3.2.-)|
          Length = 253

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 84  RRGASGVAEGWAGLGSARVW 25
           R G  GVA GWAGL +AR W
Sbjct: 157 RHGQRGVALGWAGLPAARDW 176

>FBXL8_HUMAN (Q96CD0) F-box/LRR-repeat protein 8 (F-box and leucine-rich repeat|
           protein 8) (F-box protein FBL8)
          Length = 374

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 320 GLPDEVALLCLARVPRQYHNALRRVSRGW-KALLCSEEWH 436
           GLP+EV  L    +  +   A  RV R W  A  CS  WH
Sbjct: 7   GLPEEVLALIFRHLSLRDRAAAARVCRAWAAAATCSAVWH 46

>MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 2 (Membrane-associated
            guanylate kinase inverted 2) (MAGI-2)
            (Atrophin-1-interacting protein 1)
            (Atrophin-1-interacting protein A)
          Length = 1455

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 27/73 (36%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
 Frame = -3

Query: 287  PSSYRRASGNALLQR*MIILAGGRRTDLRGRGSGWGSAEREREGIGALPATRGAGGG--- 117
            P+S  RA G A         AGG+       GS        REG GA PA  G GGG   
Sbjct: 1343 PASEARAPGLAAADAADAARAGGKEAPRAAAGSELC----RREGPGAAPAFAGPGGGGSG 1398

Query: 116  --EHLDLAGIRCG 84
              E    AG R G
Sbjct: 1399 ALEAEGRAGARAG 1411

>COFE_HALMA (Q5UZQ7) F420-0:gamma-glutamyl ligase (EC 6.3.2.-)|
          Length = 257

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 84  RRGASGVAEGWAGLGSARVW 25
           R G  GVA GWAGL ++R W
Sbjct: 161 RLGQRGVALGWAGLSASRDW 180

>ALG9_HUMAN (Q9H6U8) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1.-)|
           (Asparagine-linked glycosylation protein 9 homolog)
           (Disrupted in bipolar disorder protein 1)
          Length = 611

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 221 GRRTDLRGRGSGWGSAEREREGIGALPATRGAGGGEH-LDLAGIRCGE 81
           G R  L+G G+  G      + +  L  +R AGG EH  +L+G + G+
Sbjct: 5   GARQRLKGSGASSGDTAPAADKLRELLGSREAGGAEHRTELSGNKAGQ 52

>CAP2_ARATH (Q8LF20) Putative clathrin assembly protein At2g25430|
          Length = 653

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 224 GGRRTDLRGRGSGWGSAEREREGIGALPATRGAGGG 117
           GG  +D RG  +G+G   +     G +    G GGG
Sbjct: 199 GGGGSDFRGDNNGYGGVPKRSRSYGDMTEMGGGGGG 234

>SCONB_EMENI (Q00659) Sulfur metabolite repression control protein|
          Length = 678

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 260 YQKLSYRKMESAD-IQTQLIHGLPDEVALLCLARVPRQYHNALRRVSRGWKALLCSE-EW 433
           + +LSY      D I+   I  LP E+A   L  +         +VSRGW+AL   +  W
Sbjct: 162 FPQLSYISATVRDLIRIDFITALPPEIAFKILCYLDTTSLCKASQVSRGWRALADDDVVW 221

Query: 434 H 436
           H
Sbjct: 222 H 222

>DCX_MOUSE (O88809) Neuronal migration protein doublecortin (Lissencephalin-X)|
           (Lis-X) (Doublin)
          Length = 366

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 35  AEPSPAQPSATPLAPLRRSGSPPDLG 112
           A P+P + SA    P+RRS SP D G
Sbjct: 286 ASPTPQKTSAKSPGPMRRSKSPADSG 311

>DCX_RAT (Q9ESI7) Neuronal migration protein doublecortin|
          Length = 365

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 35  AEPSPAQPSATPLAPLRRSGSPPDLG 112
           A P+P + SA    P+RRS SP D G
Sbjct: 286 ASPTPQKTSAKSPGPMRRSKSPADSG 311

>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)|
           (DEAH box protein 57)
          Length = 1388

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 218 RRTDLRGRGSGWGSAEREREGIGALPATRGAGGG 117
           RR    G+G G GS+   R G G +  + G GGG
Sbjct: 6   RRKGKPGKGDGKGSSRGGRGGKGHMNKSHGGGGG 39

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 35   AEPSPAQPSATPLAPLRRSGSPP 103
            A PSP  P+  P+AP   SG PP
Sbjct: 2843 AGPSPPPPAVQPVAPPPTSGPPP 2865

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 35  AEPSPAQPSATPLAPLRRSGSPPDLG 112
           A PSPA PS  P +P   S +PP  G
Sbjct: 44  APPSPAPPSPAPPSPAPPSPAPPSPG 69

>CASC3_RAT (Q8K3X0) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein homolog) (Barentsz protein) (Btz)
          Length = 699

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -3

Query: 227 AGGRRTDLRGRGSGWGSAEREREGIGALPATRGA-GGGEHL---DLAGIRCGEE 78
           A G  +    RG G  S      G G+LP+ RG  GGG HL   +  G +  EE
Sbjct: 20  ASGSDSGSPARGGGSCSGSAGGGGSGSLPSQRGGRGGGLHLRRVESGGAKSAEE 73

>BAB2_DROME (Q9W0K4) Protein bric-a-brac 2|
          Length = 1067

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -3

Query: 296 QQIPSSYRRASGNALLQR*MIILAGGRRTDLRGRGSGWGS-AEREREGIGALPATRGAGG 120
           QQ+ + ++ A  +A+        AG       G GSG GS A     G G   +  GA  
Sbjct: 499 QQLAAQHQLAHSHAMASALAAAAAGAGAAGAGGAGSGSGSGASAPTGGTGVAGSGAGAAV 558

Query: 119 GEHLD 105
           G H D
Sbjct: 559 GSHHD 563

>CN129_MOUSE (Q8BGR8) UPF0279 protein C14orf129 homolog|
          Length = 139

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -3

Query: 425 HCITMPSIPLRHV*EHCDTAEEPLLGREEQPHLEDHV*VESVCQQIPSSYRRASGNALLQ 246
           +C+ +    LR V    D  E+ L    + P+   H  V S+   +  +YR A GNALLQ
Sbjct: 76  YCLELTEAGLRVVGYAFDQVEDHL----QTPY---HETVYSLLDTLSPAYREAFGNALLQ 128

Query: 245 R 243
           R
Sbjct: 129 R 129

>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -3

Query: 269  ASGNALLQR*MIILAGGRRTDLRGRGSGWGSAEREREGIGALPATRGAGGGEHLDLAG 96
            A G+A+ Q       G         GS  G AE+E EGI     T G G G   +L G
Sbjct: 1843 AEGDAMAQE----REGKTHNSETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQG 1896

>FBX27_MOUSE (Q6DIA9) F-box only protein 27|
          Length = 280

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 323 LPDEVALLCLARVP-RQYHNALRRVSRGWKALL 418
           LP E+ LL L+ VP R      RRV R W+AL+
Sbjct: 26  LPPELLLLVLSHVPPRTLLMHCRRVCRAWRALV 58

>ADA1D_PIG (Q9TTM9) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)|
           (Alpha 1D-adrenoreceptor)
          Length = 571

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 227 AGGRRTDLRGRGSGWGSAEREREGIGALPATRGAGG 120
           AGG      G GSG G+A  E   +  +P T G+GG
Sbjct: 20  AGGASAGGSGGGSG-GAAASEGRAVDGVPGTAGSGG 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,294,523
Number of Sequences: 219361
Number of extensions: 854005
Number of successful extensions: 3503
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3489
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)