ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast25f06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 111 bits (56), Expect = 1e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 141 gtgacgccgatggtcgtgttcgtcaactccaagagcggcggccgacatgggcccgggctc 200 ||||||||| |||| |||||||||||||| ||||||||| | || ||||||| |||| Sbjct: 33502121 gtgacgccggtggtggtgttcgtcaactcgcggagcggcggtaggcacgggcccgagctc 33502062 Query: 201 aaggtgcggctccacgagctcatcagcaaggagcaggtga 240 ||||||||||||||||||||||||||| |||||||||||| Sbjct: 33502061 aaggtgcggctccacgagctcatcagcgaggagcaggtga 33502022
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 111 bits (56), Expect = 1e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 141 gtgacgccgatggtcgtgttcgtcaactccaagagcggcggccgacatgggcccgggctc 200 ||||||||| |||| |||||||||||||| ||||||||| | || ||||||| |||| Sbjct: 76996 gtgacgccggtggtggtgttcgtcaactcgcggagcggcggtaggcacgggcccgagctc 76937 Query: 201 aaggtgcggctccacgagctcatcagcaaggagcaggtga 240 ||||||||||||||||||||||||||| |||||||||||| Sbjct: 76936 aaggtgcggctccacgagctcatcagcgaggagcaggtga 76897
>ref|XM_468178.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1801 Score = 107 bits (54), Expect = 2e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 141 gtgacgccgatggtcgtgttcgtcaactccaagagcggcggccgacatgggcccgggctc 200 ||||||||| |||| |||||||||||||| ||||||||| | || ||||||| |||| Sbjct: 324 gtgacgccggtggtggtgttcgtcaactcgcggagcggcggtaggcacgggcccgagctc 383 Query: 201 aaggtgcggctccacgagctcatcagcaaggagcaggt 238 ||||||||||||||||||||||||||| |||||||||| Sbjct: 384 aaggtgcggctccacgagctcatcagcgaggagcaggt 421
>dbj|AK065676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036I11, full insert sequence Length = 1802 Score = 107 bits (54), Expect = 2e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 141 gtgacgccgatggtcgtgttcgtcaactccaagagcggcggccgacatgggcccgggctc 200 ||||||||| |||| |||||||||||||| ||||||||| | || ||||||| |||| Sbjct: 324 gtgacgccggtggtggtgttcgtcaactcgcggagcggcggtaggcacgggcccgagctc 383 Query: 201 aaggtgcggctccacgagctcatcagcaaggagcaggt 238 ||||||||||||||||||||||||||| |||||||||| Sbjct: 384 aaggtgcggctccacgagctcatcagcgaggagcaggt 421
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 tcgcctccgcccggccgccgccg 59 ||||||||||||||||||||||| Sbjct: 6621334 tcgcctccgcccggccgccgccg 6621312
>dbj|AP005719.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1130E10 Length = 151606 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 tcgcctccgcccggccgccgccg 59 ||||||||||||||||||||||| Sbjct: 14333 tcgcctccgcccggccgccgccg 14311
>emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on chromosome 22, complete sequence Length = 166566 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 36 ctcgcctccgcccggccgccgcc 58 ||||||||||||||||||||||| Sbjct: 132860 ctcgcctccgcccggccgccgcc 132882
>dbj|AP005160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0031C24 Length = 194111 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 tcgcctccgcccggccgccgccg 59 ||||||||||||||||||||||| Sbjct: 133428 tcgcctccgcccggccgccgccg 133406
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 101 ggcggactcctccgtcgcggcc 122 |||||||||||||||||||||| Sbjct: 122588 ggcggactcctccgtcgcggcc 122609 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 ctccgccccggcggcggactcctc 112 |||| ||||||||||||||||||| Sbjct: 10446 ctcctccccggcggcggactcctc 10469
>gb|AC079852.3| Oryza sativa chromosome 10 clone OSJNBa0034A02, complete sequence Length = 185904 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgccg 59 |||||||||||||||||||||| Sbjct: 155313 cgcctccgcccggccgccgccg 155334
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.27 Identities = 28/30 (93%) Strand = Plus / Plus Query: 127 tcggcggcgaggtggtgacgccgatggtcg 156 ||||||||||||||||||||| ||| |||| Sbjct: 4865162 tcggcggcgaggtggtgacgctgatcgtcg 4865191
>tpg|BK000283.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M3, complete sequence Length = 949 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgccg 59 |||||||||||||||||||||| Sbjct: 633 cgcctccgcccggccgccgccg 654
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgccg 59 |||||||||||||||||||||| Sbjct: 2652433 cgcctccgcccggccgccgccg 2652454
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgccg 59 |||||||||||||||||||||| Sbjct: 11446359 cgcctccgcccggccgccgccg 11446380
>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417E03 Length = 133019 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgccg 59 |||||||||||||||||||||| Sbjct: 15602 cgcctccgcccggccgccgccg 15623
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgccg 59 |||||||||||||||||||||| Sbjct: 2652384 cgcctccgcccggccgccgccg 2652405
>ref|XM_480580.1| Oryza sativa (japonica cultivar-group), mRNA Length = 625 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 83 ccactcctccgccccggcggcggac 107 ||||||||| ||||||||||||||| Sbjct: 69 ccactcctcggccccggcggcggac 93
>gb|AC122508.3| Mus musculus BAC clone RP24-427G15 from chromosome 12, complete sequence Length = 169567 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tgcagataatttattttttga 319 ||||||||||||||||||||| Sbjct: 126311 tgcagataatttattttttga 126291
>gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, complete sequence Length = 191755 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 94771 cgcctccgcccggccgccgcc 94751
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ccgcccggccgccgccgtcgg 63 ||||||||||||||||||||| Sbjct: 123669 ccgcccggccgccgccgtcgg 123649
>gb|AC026470.6| Homo sapiens chromosome 16 clone RP11-44I10, complete sequence Length = 169566 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 114300 cgcctccgcccggccgccgcc 114320
>gb|AC098732.3| Mus musculus BAC clone RP23-3L20 from 3, complete sequence Length = 274210 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 36 ctcgcctccgcccggccgccgccgt 60 |||| |||||||||||||||||||| Sbjct: 43344 ctcggctccgcccggccgccgccgt 43320
>gb|AC092685.2| Homo sapiens BAC clone RP11-746P2 from 7, complete sequence Length = 183263 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 23490 cgcctccgcccggccgccgcc 23510
>emb|AL732369.6| Human DNA sequence from clone RP13-107M13 on chromosome X Contains part of a novel gene and a CpG island, complete sequence Length = 44438 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 15633 cgcctccgcccggccgccgcc 15613
>emb|AL845433.4| Human DNA sequence from clone RP11-674N8 on chromosome X Contains a chromobox homolog 5 (HP1 alpha homolog, Drosophila) (CBX5) pseudogene, the 5' end of the NHS gene for Nance-Horan syndrome (congenital cataracts and dental anomalies) and two CpG islands, complete sequence Length = 200476 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 162705 cgcctccgcccggccgccgcc 162725
>ref|XM_788431.1| PREDICTED: Strongylocentrotus purpuratus similar to diacylglycerol kinase, delta 130kDa isoform 1 (LOC588764), mRNA Length = 282 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 tcgtgttcgtcaactccaagagcgg 178 |||| |||||||||||||||||||| Sbjct: 161 tcgtcttcgtcaactccaagagcgg 185
>emb|AL355301.9| Human DNA sequence from clone RP11-594J24 on chromosome 10 Contains the 5' end of gene FLJ37160 and twp CpG islands, complete sequence Length = 135538 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 121317 cgcctccgcccggccgccgcc 121337
>emb|AL122034.29|HSDJ90K10 Human DNA sequence from clone RP1-90K10 on chromosome 6 Contains the PPIL1 gene for peptidylprolyl isomerase (cyclophilin)-like 1 (CYPL1, CGI-124), gene FLJ25357, a novel gene, a novel pseudogene, the gene for a novel SCP-like extracellular protein, the gene for mitochondrial carrier homolog 1 (MTCH1) (CGI-64) and two CpG islands, complete sequence Length = 133154 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 72997 cgcctccgcccggccgccgcc 73017
>emb|AL096840.25|HSJ1077B9 Human DNA sequence from clone RP5-1077B9 on chromosome 1p36.11-36.32 Contains the 5' end of a novel gene, the PLOD gene for procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI), the MFN2 gene for mitofusin 2 and a novel gene, complete sequence Length = 126525 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 86388 cgcctccgcccggccgccgcc 86368
>gb|AC119044.6| Homo sapiens 12 BAC RP11-23J18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108899 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 13728 cgcctccgcccggccgccgcc 13748
>ref|XM_782192.1| PREDICTED: Strongylocentrotus purpuratus similar to diacylglycerol kinase, delta 130kDa isoform 1 (LOC582232), mRNA Length = 3723 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 tcgtgttcgtcaactccaagagcgg 178 |||| |||||||||||||||||||| Sbjct: 851 tcgtcttcgtcaactccaagagcgg 875
>dbj|AK124981.1| Homo sapiens cDNA FLJ42991 fis, clone BRTHA2010397 Length = 1940 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 954 cgcctccgcccggccgccgcc 974
>gb|AC011378.7| Homo sapiens chromosome 5 clone CTB-128B4, complete sequence Length = 112357 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 25386 cgcctccgcccggccgccgcc 25366
>gb|AF512504.1| Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 1 (XRCC1) gene, complete cds Length = 35181 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 29314 cgcctccgcccggccgccgcc 29294
>gb|AC025263.22| Homo sapiens 12 BAC RP11-588G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182226 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 73388 cgcctccgcccggccgccgcc 73408
>gb|AC063963.11| Homo sapiens chromosome 10 clone RP11-295J3, complete sequence Length = 179104 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 51300 cgcctccgcccggccgccgcc 51280
>gb|AC114310.2| Homo sapiens chromosome 5 clone RP11-285K13, complete sequence Length = 157366 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 23269 cgcctccgcccggccgccgcc 23249
>gb|AC114956.2| Homo sapiens chromosome 5 clone RP11-159F24, complete sequence Length = 104726 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 37393 cgcctccgcccggccgccgcc 37413
>gb|AC109999.2| Homo sapiens chromosome 5 clone CTD-2265M6, complete sequence Length = 143750 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 31945 cgcctccgcccggccgccgcc 31925
>gb|AC011374.6| Homo sapiens chromosome 5 clone CTB-113P19, complete sequence Length = 203961 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 162769 cgcctccgcccggccgccgcc 162749
>gb|AC008567.5| Homo sapiens chromosome 19 clone CTC-543D15, complete sequence Length = 153704 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 71163 cgcctccgcccggccgccgcc 71183
>gb|AC012433.7| Homo sapiens, clone RP11-10I6, complete sequence Length = 144804 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 41122 cgcctccgcccggccgccgcc 41102
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 ccactcctccgccccggcggcggac 107 ||||||||| ||||||||||||||| Sbjct: 5964463 ccactcctcggccccggcggcggac 5964439 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gcagggcccgagcgcctccc 84 |||||||||||||||||||| Sbjct: 23840768 gcagggcccgagcgcctccc 23840787
>gb|AC122688.5| Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178315 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 130321 cgcctccgcccggccgccgcc 130341
>gb|AC018758.2|AC018758 Homo sapiens chromosome 19, BAC CTB-61I7 (BC52850), complete sequence Length = 185409 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 180075 cgcctccgcccggccgccgcc 180095
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073I05 Length = 182291 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 ccactcctccgccccggcggcggac 107 ||||||||| ||||||||||||||| Sbjct: 151573 ccactcctcggccccggcggcggac 151549
>dbj|AP003858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_H11 Length = 122464 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 ccactcctccgccccggcggcggac 107 ||||||||| ||||||||||||||| Sbjct: 15275 ccactcctcggccccggcggcggac 15251
>dbj|AP004157.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1114_D06 Length = 107621 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 ccactcctccgccccggcggcggac 107 ||||||||| ||||||||||||||| Sbjct: 57566 ccactcctcggccccggcggcggac 57542
>dbj|AK108353.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C02, full insert sequence Length = 625 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 83 ccactcctccgccccggcggcggac 107 ||||||||| ||||||||||||||| Sbjct: 69 ccactcctcggccccggcggcggac 93
>gb|AC110248.22| Mus musculus chromosome 3, clone RP23-257P11, complete sequence Length = 206915 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 ctcgcctccgcccggccgccgccgt 60 |||| |||||||||||||||||||| Sbjct: 2950 ctcggctccgcccggccgccgccgt 2974
>dbj|AP002495.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2313N18, complete sequence Length = 131570 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 61903 cgcctccgcccggccgccgcc 61923
>dbj|AP003392.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-110I1, complete sequence Length = 178341 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgcc 58 ||||||||||||||||||||| Sbjct: 150309 cgcctccgcccggccgccgcc 150289
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 agcgcctcccactcctccgcc 95 ||||||||||||||||||||| Sbjct: 439420 agcgcctcccactcctccgcc 439400
>ref|XM_483004.1| Oryza sativa (japonica cultivar-group), mRNA Length = 769 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gcagggcccgagcgcctccc 84 |||||||||||||||||||| Sbjct: 157 gcagggcccgagcgcctccc 176
>ref|XM_519365.1| PREDICTED: Pan troglodytes similar to Kielin (LOC463712), mRNA Length = 3468 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 gcccgggctcaaggtgcggctcca 214 |||||||||| ||||||||||||| Sbjct: 1356 gcccgggctccaggtgcggctcca 1379
>gb|AC105320.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1675_H07, complete sequence Length = 135294 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgc 57 |||||||||||||||||||| Sbjct: 113864 cgcctccgcccggccgccgc 113845
>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04, complete sequence Length = 168424 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgc 57 |||||||||||||||||||| Sbjct: 64928 cgcctccgcccggccgccgc 64909
>gb|AE017263.1| Mesoplasma florum L1 complete genome Length = 793224 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 cagataatttattttttgaa 320 |||||||||||||||||||| Sbjct: 431989 cagataatttattttttgaa 432008
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ctcgcctccgcccggccgccgccg 59 |||||| ||||||||||||||||| Sbjct: 9452307 ctcgcccccgcccggccgccgccg 9452330
>gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, complete sequence Length = 186632 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 88971 cggagcagggcccgagcgcc 88952
>ref|XM_989903.1| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 7 (Rab11fip3), mRNA Length = 2314 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_989874.1| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 6 (Rab11fip3), mRNA Length = 2296 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_989936.1| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 8 (Rab11fip3), mRNA Length = 5514 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_923213.2| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 14 (Rab11fip3), mRNA Length = 2314 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_923209.2| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 13 (Rab11fip3), mRNA Length = 2296 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_990883.1| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 18 (Rab11fip3), mRNA Length = 5379 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_914406.2| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 9 (Rab11fip3), mRNA Length = 5514 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_899046.2| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 6 (Rab11fip3), mRNA Length = 2314 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_899040.2| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 5 (Rab11fip3), mRNA Length = 2296 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>ref|XM_484616.3| PREDICTED: Mus musculus RAB11 family interacting protein 3 (class II), transcript variant 1 (Rab11fip3), mRNA Length = 5514 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 222 cggagcagggcccgagcgcc 241
>gb|AC073886.4| Homo sapiens BAC clone RP11-101N13 from 7, complete sequence Length = 112568 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgc 57 |||||||||||||||||||| Sbjct: 1736 cgcctccgcccggccgccgc 1717
>emb|CR670382.2|CNS0FG8K Tetraodon nigroviridis full-length cDNA Length = 1443 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gctcatcagcaaggagcagg 237 |||||||||||||||||||| Sbjct: 914 gctcatcagcaaggagcagg 933
>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence Length = 138465 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 taatttattttttgaaggaa 324 |||||||||||||||||||| Sbjct: 38123 taatttattttttgaaggaa 38104
>emb|CR627489.6| Zebrafish DNA sequence from clone DKEY-116O23 in linkage group 16, complete sequence Length = 49539 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 actatgcagataatttattttttg 318 |||||| ||||||||||||||||| Sbjct: 31372 actatggagataatttattttttg 31395
>gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's Hospital Oakland Research Institute) complete sequence Length = 227741 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 74131 cggagcagggcccgagcgcc 74150
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 cgcggccctcatcggcggcg 135 |||||||||||||||||||| Sbjct: 722583 cgcggccctcatcggcggcg 722564
>emb|AL391375.11| Human DNA sequence from clone RP11-375A20 on chromosome X Contains a cytochrome b (MTCYB) pseudogene and two CpG islands, complete sequence Length = 170623 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gcctccgcccggccgccgcc 58 |||||||||||||||||||| Sbjct: 95906 gcctccgcccggccgccgcc 95887
>emb|AL163533.14| Human DNA sequence from clone RP11-114G1 on chromosome 13q31.3-33.1 Contains a Sp3 transcription factor (SP3) pseudogene and a novel gene, complete sequence Length = 153592 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 tatgcagataatttattttttgaa 320 ||||||||||||| |||||||||| Sbjct: 58682 tatgcagataattcattttttgaa 58705
>emb|AL133519.28| Human DNA sequence from clone RP11-122O1 on chromosome 20 Contains the VIAAT gene for vesicular inhibitory amino acid transporter, the ACTR5 gene for ARP5 actin-related protein 5 homolog (yeast) and three CpG islands, complete sequence Length = 96299 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 gccgtcggagcagggcccgagcgc 79 |||||||||||||||||| ||||| Sbjct: 41289 gccgtcggagcagggccccagcgc 41312
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 36 ctcgcctccgcccggccgccgccgtcgg 63 |||||||||||||||||| |||| |||| Sbjct: 1461249 ctcgcctccgcccggccgacgccctcgg 1461222
>gb|AC108727.6| Homo sapiens 3 BAC RP11-231L11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155898 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gcctccgcccggccgccgcc 58 |||||||||||||||||||| Sbjct: 96300 gcctccgcccggccgccgcc 96319
>gb|AE005765.1| Caulobacter crescentus CB15 section 91 of 359 of the complete genome Length = 10731 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 36 ctcgcctccgcccggccgccgccgtcgg 63 |||||||| |||| |||||||||||||| Sbjct: 6013 ctcgcctcggccccgccgccgccgtcgg 6040
>dbj|AK090715.1| Homo sapiens cDNA FLJ33396 fis, clone BRACE2007920, weakly similar to Xenopus laevis mRNA for Kielin Length = 1882 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 gcccgggctcaaggtgcggctcca 214 |||||||||| ||||||||||||| Sbjct: 185 gcccgggctccaggtgcggctcca 208
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ctcgcctccgcccggccgccgccg 59 |||||| ||||||||||||||||| Sbjct: 149707 ctcgcccccgcccggccgccgccg 149730
>ref|XM_940405.1| PREDICTED: Homo sapiens similar to protein phosphatase 1, regulatory (inhibitor) subunit 9A (LOC651268), mRNA Length = 1715 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgc 57 |||||||||||||||||||| Sbjct: 418 cgcctccgcccggccgccgc 399
>ref|XM_928945.1| PREDICTED: Homo sapiens similar to protein phosphatase 1, regulatory (inhibitor) subunit 9A (LOC645983), mRNA Length = 1715 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgc 57 |||||||||||||||||||| Sbjct: 418 cgcctccgcccggccgccgc 399
>gb|AC092017.2| Homo sapiens chromosome 1 clone RP11-543B16, complete sequence Length = 193041 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gcctccgcccggccgccgcc 58 |||||||||||||||||||| Sbjct: 140306 gcctccgcccggccgccgcc 140325
>dbj|AK163013.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430073A11 product:unclassifiable, full insert sequence Length = 2307 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggagcagggcccgagcgcc 80 |||||||||||||||||||| Sbjct: 213 cggagcagggcccgagcgcc 232
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgc 57 |||||||||||||||||||| Sbjct: 15409907 cgcctccgcccggccgccgc 15409888
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ctcgcctccgcccggccgccgccg 59 |||||| ||||||||||||||||| Sbjct: 9450428 ctcgcccccgcccggccgccgccg 9450451
>gb|AC025594.5|AC025594 Homo sapiens chromosome 7 clone RP11-309L24, complete sequence Length = 200197 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gcccgggctcaaggtgcggctcca 214 |||||||||| ||||||||||||| Sbjct: 68685 gcccgggctccaggtgcggctcca 68662
>gb|AC024952.4|AC024952 Homo sapiens chromosome 7 clone RP11-66F23, complete sequence Length = 182426 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gcccgggctcaaggtgcggctcca 214 |||||||||| ||||||||||||| Sbjct: 163991 gcccgggctccaggtgcggctcca 163968
>gb|AC013267.11| Homo sapiens BAC clone RP11-284O8 from 2, complete sequence Length = 170378 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 gcggcggccgacatgggcccgggc 198 ||||||||||||| |||||||||| Sbjct: 91311 gcggcggccgacaggggcccgggc 91288
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctcatcggcggcgaggtggt 142 |||||||||||||||||||| Sbjct: 829781 ctcatcggcggcgaggtggt 829800
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gcagggcccgagcgcctccc 84 |||||||||||||||||||| Sbjct: 129968 gcagggcccgagcgcctccc 129987
>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_H02 Length = 108603 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gcagggcccgagcgcctccc 84 |||||||||||||||||||| Sbjct: 32472 gcagggcccgagcgcctccc 32491
>dbj|BS000135.1| Pan troglodytes chromosome 22 clone:RP43-114M01, map 22, complete sequences Length = 73133 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gcctccgcccggccgccgcc 58 |||||||||||||||||||| Sbjct: 5567 gcctccgcccggccgccgcc 5548
>gb|U81596.2|MSU81596 Methylocystis sp. M particulate methane monooxygenase operon, complete sequence Length = 5050 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gcaaggagcaggtgacgacc 245 |||||||||||||||||||| Sbjct: 3681 gcaaggagcaggtgacgacc 3700
>dbj|AK107940.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A12, full insert sequence Length = 769 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gcagggcccgagcgcctccc 84 |||||||||||||||||||| Sbjct: 157 gcagggcccgagcgcctccc 176
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cctccgccccggcggcggac 107 |||||||||||||||||||| Sbjct: 169030 cctccgccccggcggcggac 169011
>dbj|AP002346.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2387M17, complete sequences Length = 127295 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gcctccgcccggccgccgcc 58 |||||||||||||||||||| Sbjct: 10721 gcctccgcccggccgccgcc 10740
>emb|BX323856.3| Mouse DNA sequence from clone RP23-27A18 on chromosome 4, complete sequence Length = 34788 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 taatttattttttgaaggaa 324 |||||||||||||||||||| Sbjct: 6202 taatttattttttgaaggaa 6221
>emb|AL157375.6| Human DNA sequence from clone RP1-133P16 on chromosome 6 Contains the ARF1 (ADP-ribosylation factor 1) gene, ESTs, STSs and GSSs, complete sequence Length = 65763 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgcctccgcccggccgccgc 57 |||||||||||||||||||| Sbjct: 53319 cgcctccgcccggccgccgc 53300
>dbj|AB023170.1| Homo sapiens mRNA for KIAA0953 protein, partial cds Length = 5161 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 gcggcggccgacatgggcccgggc 198 ||||||||||||| |||||||||| Sbjct: 82 gcggcggccgacaggggcccgggc 59 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,152,926 Number of Sequences: 3902068 Number of extensions: 3152926 Number of successful extensions: 82337 Number of sequences better than 10.0: 104 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80739 Number of HSP's gapped (non-prelim): 1598 length of query: 324 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 302 effective length of database: 17,147,199,772 effective search space: 5178454331144 effective search space used: 5178454331144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
