ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast25e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ969059.1| Hordeum vulgare mRNA for glycosyltransferase (pg... 543 e-151
2emb|AJ969064.1| Triticum aestivum mRNA for glycosyltransferase (... 519 e-144
3emb|AJ969062.1| Saccharum officinarum mRNA for glycosyltransfera... 377 e-101
4emb|AJ969065.1| Zea mays mRNA for glycosyltransferase (pglcat8 g... 341 7e-91
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 293 2e-76
6dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 293 2e-76
7dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 293 2e-76
8dbj|AK100321.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 2e-76
9emb|AJ971043.1| Poncirus trifoliata mRNA for glycosyltransferase... 46 0.060
10emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 46 0.060
11ref|XM_368413.1| Magnaporthe grisea 70-15 chromosome VI predicte... 42 0.93
12ref|XM_845109.1| PREDICTED: Canis familiaris hypothetical protei... 42 0.93
13gb|AY909998.1| Panthera leo persica clone S946b MHC class I anti... 42 0.93
14gb|AY909983.1| Panthera leo persica clone S87 MHC class I antige... 42 0.93
15gb|AY909979.1| Panthera leo persica clone FS920b MHC class I ant... 42 0.93
16gb|AY909930.1| Panthera leo persica clone 113 MHC class I antige... 42 0.93
17gb|AY909919.1| Panthera leo persica clone 103 MHC class I antige... 42 0.93
18gb|U07673.1|FCU07673 Felis catus clone FLAX10 major histocompati... 42 0.93
19ref|XM_475107.1| Oryza sativa (japonica cultivar-group), predic... 40 3.7
20ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
21gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
22gb|AF519803.1| Triticum aestivum ABA response element binding fa... 40 3.7
23ref|XM_501555.1| Yarrowia lipolytica CLIB122, YALI0C07436g predi... 40 3.7
24emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 40 3.7
25emb|AJ617306.1| Yarrowia lipolytica MATA locus, containing sla2 ... 40 3.7
26gb|AE005922.1| Caulobacter crescentus CB15 section 248 of 359 of... 40 3.7
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
29gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.7
30dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
31dbj|AK106046.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
32gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.7
33gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 3.7
34emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 3.7
35gb|AC152974.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7 
>emb|AJ969059.1| Hordeum vulgare mRNA for glycosyltransferase (pglcat8 gene)
          Length = 1627

 Score =  543 bits (274), Expect = e-151
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaggccccggggagcacgcagagccacgtcgtcgtcggccgacacgggattcggatcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aggaggccgcggggagcacgcagagccacgtcgtcgtcggccgacacgggattcggatcc 475

                                                                       
Query: 61  gcccctggccgcaccccgaccccgtcgaggtcatgcgcgcgcaccggatcatggagcgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gcccctggccgcaccccgaccccgtcgaggtcatgcgcgcgcaccggatcatggagcgcg 535

                                                                       
Query: 121 tgcaggaggagcagcgccgctggtacggcgtcagggagccccgccaggtgctcgtcgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgcaggaggagcagcgccgctggtacggcgtcagggagccccgccaggtgctcgtcgtca 595

                                                                       
Query: 181 ccccgacctactcgcgcgccttccaggcgctccacctcaccggcctcctccactcgctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccccgacctactcgcgcgccttccaggcgctccacctcaccggcctcctccactcgctcc 655

                                                     
Query: 241 gcaacgtgccctacccgctaacctggatcgtcgtcgaggccg 282
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 656 gcaacgtgccctacccgctcacctggatcgtcgtcgaggccg 697
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>emb|AJ969064.1| Triticum aestivum mRNA for glycosyltransferase (pglcat8 gene)
          Length = 1945

 Score =  519 bits (262), Expect = e-144
 Identities = 277/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaggccccggggagcacgcagagccacgtcgtcgtcggccgacacgggattcggatcc 60
           |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 602 aggaggccgcggggagcacgcagagccacgtcgtggtcggccgccacgggattcggatcc 661

                                                                       
Query: 61  gcccctggccgcaccccgaccccgtcgaggtcatgcgcgcgcaccggatcatggagcgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gcccctggccgcaccccgaccccgtcgaggtcatgcgcgcgcaccggatcatggagcgcg 721

                                                                       
Query: 121 tgcaggaggagcagcgccgctggtacggcgtcagggagccccgccaggtgctcgtcgtca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 722 tgcaggaggagcagcgccgctggtacggcgtcagggagccgcgccaggtgctcgtcgtca 781

                                                                       
Query: 181 ccccgacctactcgcgcgccttccaggcgctccacctcaccggcctcctccactcgctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ccccgacctactcgcgcgccttccaggcgctccacctcaccggcctcctccactcgctcc 841

                                                     
Query: 241 gcaacgtgccctacccgctaacctggatcgtcgtcgaggccg 282
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 842 gcaacgtgccctacccgctcacctggatcgtcgtcgaggccg 883
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>emb|AJ969062.1| Saccharum officinarum mRNA for glycosyltransferase (pglcat8 gene)
          Length = 2239

 Score =  377 bits (190), Expect = e-101
 Identities = 244/262 (93%)
 Strand = Plus / Plus

                                                                       
Query: 19  cgcagagccacgtcgtcgtcggccgacacgggattcggatccgcccctggccgcaccccg 78
           |||||||||||||||| || ||  | |||||||||||||||||||| ||||||||||| |
Sbjct: 584 cgcagagccacgtcgtggtggggaggcacgggattcggatccgcccgtggccgcacccgg 643

                                                                       
Query: 79  accccgtcgaggtcatgcgcgcgcaccggatcatggagcgcgtgcaggaggagcagcgcc 138
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 accctgtcgaggtgatgcgcgcgcaccggatcatggagcgcgtgcaggaggagcagcgcc 703

                                                                       
Query: 139 gctggtacggcgtcagggagccccgccaggtgctcgtcgtcaccccgacctactcgcgcg 198
           ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct: 704 gctggtacggcgtcaaggagcccaggcaggtgctcgtcgtcaccccgacctactcccgcg 763

                                                                       
Query: 199 ccttccaggcgctccacctcaccggcctcctccactcgctccgcaacgtgccctacccgc 258
           | ||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 764 cgttccaggcgctccacatcaccggcctcctccactccctccgcaacgtgccgtacccgc 823

                                 
Query: 259 taacctggatcgtcgtcgaggc 280
           | ||||||||||||||||||||
Sbjct: 824 tcacctggatcgtcgtcgaggc 845
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>emb|AJ969065.1| Zea mays mRNA for glycosyltransferase (pglcat8 gene)
          Length = 1522

 Score =  341 bits (172), Expect = 7e-91
 Identities = 220/236 (93%)
 Strand = Plus / Plus

                                                                       
Query: 45  cacgggattcggatccgcccctggccgcaccccgaccccgtcgaggtcatgcgcgcgcac 104
           ||||||||||||||||| || ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 509 cacgggattcggatccggccgtggccgcacccggaccccgtcgaggtgatgcgggcgcac 568

                                                                       
Query: 105 cggatcatggagcgcgtgcaggaggagcagcgccgctggtacggcgtcagggagccccgc 164
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  | 
Sbjct: 569 cggatcatggagcgcgtgcaggaggaacagcgccgctggtacggcgtcaaggagccgagg 628

                                                                       
Query: 165 caggtgctcgtcgtcaccccgacctactcgcgcgccttccaggcgctccacctcaccggc 224
           |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 629 caggtgctcgccgtcaccccgacctactcacgcgcgttccaggcgctccacctcaccggc 688

                                                                   
Query: 225 ctcctccactcgctccgcaacgtgccctacccgctaacctggatcgtcgtcgaggc 280
           ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 689 ctcctccactcactccgcaacgtgccgtacccgctcacctggatcgtcgtcgaggc 744
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  293 bits (148), Expect = 2e-76
 Identities = 235/264 (89%)
 Strand = Plus / Plus

                                                                            
Query: 17       cacgcagagccacgtcgtcgtcggccgacacgggattcggatccgcccctggccgcaccc 76
                ||||||||||||||| || || || || || ||||| |||||||| || |||||||||||
Sbjct: 28311890 cacgcagagccacgtggtggtggggcggcatgggatacggatccggccatggccgcaccc 28311949

                                                                            
Query: 77       cgaccccgtcgaggtcatgcgcgcgcaccggatcatggagcgcgtgcaggaggagcagcg 136
                 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 28311950 tgaccccgtcgaggtgatgcgggcgcaccggatcatggagcgcgtgcaggaggagcagcg 28312009

                                                                            
Query: 137      ccgctggtacggcgtcagggagccccgccaggtgctcgtcgtcaccccgacctactcgcg 196
                  | ||||| ||||||| |||||| ||||| || || ||||| || || |||||||| ||
Sbjct: 28312010 gaggtggtatggcgtcaaggagccgcgccatgtcctggtcgtgacgcccacctactcccg 28312069

                                                                            
Query: 197      cgccttccaggcgctccacctcaccggcctcctccactcgctccgcaacgtgccctaccc 256
                ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28312070 cgcgttccaggcgctccacctcaccggcctcctccactccctccgcaacgtgccctaccc 28312129

                                        
Query: 257      gctaacctggatcgtcgtcgaggc 280
                ||| ||||||||||| ||||||||
Sbjct: 28312130 gctcacctggatcgtggtcgaggc 28312153
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>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score =  293 bits (148), Expect = 2e-76
 Identities = 235/264 (89%)
 Strand = Plus / Plus

                                                                         
Query: 17    cacgcagagccacgtcgtcgtcggccgacacgggattcggatccgcccctggccgcaccc 76
             ||||||||||||||| || || || || || ||||| |||||||| || |||||||||||
Sbjct: 24468 cacgcagagccacgtggtggtggggcggcatgggatacggatccggccatggccgcaccc 24527

                                                                         
Query: 77    cgaccccgtcgaggtcatgcgcgcgcaccggatcatggagcgcgtgcaggaggagcagcg 136
              |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 24528 tgaccccgtcgaggtgatgcgggcgcaccggatcatggagcgcgtgcaggaggagcagcg 24587

                                                                         
Query: 137   ccgctggtacggcgtcagggagccccgccaggtgctcgtcgtcaccccgacctactcgcg 196
               | ||||| ||||||| |||||| ||||| || || ||||| || || |||||||| ||
Sbjct: 24588 gaggtggtatggcgtcaaggagccgcgccatgtcctggtcgtgacgcccacctactcccg 24647

                                                                         
Query: 197   cgccttccaggcgctccacctcaccggcctcctccactcgctccgcaacgtgccctaccc 256
             ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24648 cgcgttccaggcgctccacctcaccggcctcctccactccctccgcaacgtgccctaccc 24707

                                     
Query: 257   gctaacctggatcgtcgtcgaggc 280
             ||| ||||||||||| ||||||||
Sbjct: 24708 gctcacctggatcgtggtcgaggc 24731
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0623A10
          Length = 156517

 Score =  293 bits (148), Expect = 2e-76
 Identities = 235/264 (89%)
 Strand = Plus / Plus

                                                                          
Query: 17     cacgcagagccacgtcgtcgtcggccgacacgggattcggatccgcccctggccgcaccc 76
              ||||||||||||||| || || || || || ||||| |||||||| || |||||||||||
Sbjct: 109919 cacgcagagccacgtggtggtggggcggcatgggatacggatccggccatggccgcaccc 109978

                                                                          
Query: 77     cgaccccgtcgaggtcatgcgcgcgcaccggatcatggagcgcgtgcaggaggagcagcg 136
               |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 109979 tgaccccgtcgaggtgatgcgggcgcaccggatcatggagcgcgtgcaggaggagcagcg 110038

                                                                          
Query: 137    ccgctggtacggcgtcagggagccccgccaggtgctcgtcgtcaccccgacctactcgcg 196
                | ||||| ||||||| |||||| ||||| || || ||||| || || |||||||| ||
Sbjct: 110039 gaggtggtatggcgtcaaggagccgcgccatgtcctggtcgtgacgcccacctactcccg 110098

                                                                          
Query: 197    cgccttccaggcgctccacctcaccggcctcctccactcgctccgcaacgtgccctaccc 256
              ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 110099 cgcgttccaggcgctccacctcaccggcctcctccactccctccgcaacgtgccctaccc 110158

                                      
Query: 257    gctaacctggatcgtcgtcgaggc 280
              ||| ||||||||||| ||||||||
Sbjct: 110159 gctcacctggatcgtggtcgaggc 110182
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>dbj|AK100321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F15, full
           insert sequence
          Length = 3587

 Score =  293 bits (148), Expect = 2e-76
 Identities = 235/264 (89%)
 Strand = Plus / Plus

                                                                       
Query: 17  cacgcagagccacgtcgtcgtcggccgacacgggattcggatccgcccctggccgcaccc 76
           ||||||||||||||| || || || || || ||||| |||||||| || |||||||||||
Sbjct: 255 cacgcagagccacgtggtggtggggcggcatgggatacggatccggccatggccgcaccc 314

                                                                       
Query: 77  cgaccccgtcgaggtcatgcgcgcgcaccggatcatggagcgcgtgcaggaggagcagcg 136
            |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgaccccgtcgaggtgatgcgggcgcaccggatcatggagcgcgtgcaggaggagcagcg 374

                                                                       
Query: 137 ccgctggtacggcgtcagggagccccgccaggtgctcgtcgtcaccccgacctactcgcg 196
             | ||||| ||||||| |||||| ||||| || || ||||| || || |||||||| ||
Sbjct: 375 gaggtggtatggcgtcaaggagccgcgccatgtcctggtcgtgacgcccacctactcccg 434

                                                                       
Query: 197 cgccttccaggcgctccacctcaccggcctcctccactcgctccgcaacgtgccctaccc 256
           ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 435 cgcgttccaggcgctccacctcaccggcctcctccactccctccgcaacgtgccctaccc 494

                                   
Query: 257 gctaacctggatcgtcgtcgaggc 280
           ||| ||||||||||| ||||||||
Sbjct: 495 gctcacctggatcgtggtcgaggc 518
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>emb|AJ971043.1| Poncirus trifoliata mRNA for glycosyltransferase (pglcat8 gene)
          Length = 2073

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 39  ggccgacacgggattcggatccgcccctggccgca 73
           |||||||||||||| |||||||| || ||||||||
Sbjct: 445 ggccgacacgggatccggatccggccgtggccgca 479
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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 123    caggaggagcagcgccgctggtacggc 149
              |||| ||||||||||||||||||||||
Sbjct: 101655 caggtggagcagcgccgctggtacggc 101629
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>ref|XM_368413.1| Magnaporthe grisea 70-15 chromosome VI predicted protein (MG00831.4)
            partial mRNA
          Length = 2208

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 29   cgtcgtcgtcggccgacacgg 49
            |||||||||||||||||||||
Sbjct: 1876 cgtcgtcgtcggccgacacgg 1856
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>ref|XM_845109.1| PREDICTED: Canis familiaris hypothetical protein LOC608173
           (LOC608173), mRNA
          Length = 890

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 119 cgtgcaggaggagcagcgccgctgg 143
           |||||||||| ||||||||||||||
Sbjct: 338 cgtgcaggagcagcagcgccgctgg 362
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>gb|AY909998.1| Panthera leo persica clone S946b MHC class I antigen gene, exon 3
           and partial cds
          Length = 243

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 207 gcgctccacctcaccggcctcctcc 231
           ||||||| |||||||||||||||||
Sbjct: 188 gcgctccgcctcaccggcctcctcc 164
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>gb|AY909983.1| Panthera leo persica clone S87 MHC class I antigen gene, exon 3 and
           partial cds
          Length = 243

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 207 gcgctccacctcaccggcctcctcc 231
           ||||||| |||||||||||||||||
Sbjct: 188 gcgctccgcctcaccggcctcctcc 164
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>gb|AY909979.1| Panthera leo persica clone FS920b MHC class I antigen gene, exon 3
           and partial cds
          Length = 245

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 207 gcgctccacctcaccggcctcctcc 231
           ||||||| |||||||||||||||||
Sbjct: 190 gcgctccgcctcaccggcctcctcc 166
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>gb|AY909930.1| Panthera leo persica clone 113 MHC class I antigen gene, exon 3 and
           partial cds
          Length = 246

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 207 gcgctccacctcaccggcctcctcc 231
           ||||||| |||||||||||||||||
Sbjct: 191 gcgctccgcctcaccggcctcctcc 167
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>gb|AY909919.1| Panthera leo persica clone 103 MHC class I antigen gene, exon 3 and
           partial cds
          Length = 246

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 207 gcgctccacctcaccggcctcctcc 231
           ||||||| |||||||||||||||||
Sbjct: 191 gcgctccgcctcaccggcctcctcc 167
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>gb|U07673.1|FCU07673 Felis catus clone FLAX10 major histocompatibility complex class I
           antigen (FLA-I) mRNA, complete cds
          Length = 1464

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 207 gcgctccacctcaccggcctcctcc 231
           ||||||| |||||||||||||||||
Sbjct: 542 gcgctccgcctcaccggcctcctcc 518
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>ref|XM_475107.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 609

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  cgtcgtcgtcggccgacacg 48
           ||||||||||||||||||||
Sbjct: 245 cgtcgtcgtcggccgacacg 264
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>ref|XM_476711.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3351

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  ccttccaggcgctccacctc 218
            ||||||||||||||||||||
Sbjct: 1094 ccttccaggcgctccacctc 1075
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>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10,
             complete sequence
          Length = 148373

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cgtcgtcgtcggccgacacg 48
             ||||||||||||||||||||
Sbjct: 25273 cgtcgtcgtcggccgacacg 25292
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>gb|AF519803.1| Triticum aestivum ABA response element binding factor (ABFA) mRNA,
           partial cds
          Length = 1332

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 152 cagggagccccgccaggtgc 171
           ||||||||||||||||||||
Sbjct: 283 cagggagccccgccaggtgc 302
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>ref|XM_501555.1| Yarrowia lipolytica CLIB122, YALI0C07436g predicted mRNA
          Length = 1749

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 221  cggcctcctccactcgctccgcaa 244
            ||||||||||||| ||||||||||
Sbjct: 1501 cggcctcctccacgcgctccgcaa 1478
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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     ccccgaccccgtcgaggtca 93
              ||||||||||||||||||||
Sbjct: 186590 ccccgaccccgtcgaggtca 186571
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>emb|AJ617306.1| Yarrowia lipolytica MATA locus, containing sla2 gene, mata2 gene,
            apn2 gene (partial) and mata1 gene
          Length = 8174

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 221  cggcctcctccactcgctccgcaa 244
            ||||||||||||| ||||||||||
Sbjct: 7184 cggcctcctccacgcgctccgcaa 7207
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>gb|AE005922.1| Caulobacter crescentus CB15 section 248 of 359 of the complete genome
          Length = 10487

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 263  ctggatcgtcgtcgaggccg 282
            ||||||||||||||||||||
Sbjct: 9035 ctggatcgtcgtcgaggccg 9016
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 199     ccttccaggcgctccacctc 218
               ||||||||||||||||||||
Sbjct: 3447402 ccttccaggcgctccacctc 3447383
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 29       cgtcgtcgtcggccgacacg 48
                ||||||||||||||||||||
Sbjct: 17031906 cgtcgtcgtcggccgacacg 17031925
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    ctcgctccgcaacgtgccct 252
              ||||||||||||||||||||
Sbjct: 744302 ctcgctccgcaacgtgccct 744321
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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   ccttccaggcgctccacctc 218
             ||||||||||||||||||||
Sbjct: 87222 ccttccaggcgctccacctc 87203
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>dbj|AK106046.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E07, full
           insert sequence
          Length = 1273

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  cgtcgtcgtcggccgacacg 48
           ||||||||||||||||||||
Sbjct: 458 cgtcgtcgtcggccgacacg 477
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 213     cacctcaccggcctcctcca 232
               ||||||||||||||||||||
Sbjct: 2026056 cacctcaccggcctcctcca 2026075
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 160    cccgccaggtgctcgtcgtcaccc 183
              ||||| ||||||||||||||||||
Sbjct: 900487 cccgcgaggtgctcgtcgtcaccc 900464
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 221    cggcctcctccactcgctccgcaa 244
              ||||||||||||| ||||||||||
Sbjct: 980554 cggcctcctccacgcgctccgcaa 980531
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>gb|AC152974.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNOa0153K02, complete sequence
          Length = 40117

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cgtcgtcgtcggccgacacg 48
             ||||||||||||||||||||
Sbjct: 33170 cgtcgtcgtcggccgacacg 33189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,411,889
Number of Sequences: 3902068
Number of extensions: 1411889
Number of successful extensions: 31132
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30674
Number of HSP's gapped (non-prelim): 458
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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