ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast25d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRTI_MYXXA (Q02861) Phytoene dehydrogenase (EC 1.14.99.-) (Phyto... 28 5.8
2ZAN_MOUSE (O88799) Zonadhesin precursor 28 7.6
3FUT4_PANTR (Q659K9) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) ... 28 7.6
4FUT4_HUMAN (P22083) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) ... 28 7.6
5TRF_DROME (Q27896) TBP-related factor 27 10.0
6OAT5_HUMAN (Q63ZE4) Solute carrier family 22 member 10 (Organic ... 27 10.0
7FURIN_MOUSE (P23188) Furin precursor (EC 3.4.21.75) (Paired basi... 27 10.0

>CRTI_MYXXA (Q02861) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 529

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 278 DEAGVPKARCLVHVLVEPPAAGRQVELADEQHELRVQAP 162
           D +G P     ++VLV  P  GR V+    +  LR + P
Sbjct: 373 DPSGAPAGHSTLYVLVPTPNTGRPVDWVKTEQALRERIP 411



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>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -2

Query: 280  TTRQASQRRAVSSMYSSSHRPPGGRWSWPTSSMSCECRP 164
            +  Q     + +  Y++ H  PG  W  P  +  C C P
Sbjct: 1210 SNNQCINESSCNCPYNNKHYKPGEEWFTPNCTERCRCLP 1248



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>FUT4_PANTR (Q659K9) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV)
          Length = 405

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 253 AVSSMYSSSHRPPGGRWSW 197
           A  ++ +SS RPPG RW W
Sbjct: 151 AAEALATSSPRPPGQRWVW 169



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>FUT4_HUMAN (P22083) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV) (ELAM-1 ligand fucosyltransferase)
          Length = 405

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 253 AVSSMYSSSHRPPGGRWSW 197
           A  ++ +SS RPPG RW W
Sbjct: 151 AAEALATSSPRPPGQRWVW 169



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>TRF_DROME (Q27896) TBP-related factor|
          Length = 224

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 293 EAELDDEAGVPKARCLVHVLVEPPAAGRQVELADEQHELRVQ 168
           E + D+ A    A    H  ++P      VE  D QHE+R+Q
Sbjct: 11  ERDRDNVAATSNAAANPHAALQPQQPVALVEPKDAQHEIRLQ 52



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>OAT5_HUMAN (Q63ZE4) Solute carrier family 22 member 10 (Organic anion|
           transporter 5)
          Length = 531

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 272 AGVPKARCLVHVLVEPPAAGRQVELADEQHELRVQAP 162
           A +P  RC VH+L     +G +  +  E   LR+  P
Sbjct: 42  AAIPGHRCWVHMLDNNTGSGNETGILSEDALLRISIP 78



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>FURIN_MOUSE (P23188) Furin precursor (EC 3.4.21.75) (Paired basic amino acid|
           residue cleaving enzyme) (PACE) (Dibasic-processing
           enzyme) (Prohormone convertase 3)
          Length = 793

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 263 PKARCLVHVLVEPPAAGRQVEL 198
           P+ +C+V +LVEP   G+++E+
Sbjct: 446 PQRKCIVEILVEPKDIGKRLEV 467


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,051,490
Number of Sequences: 219361
Number of extensions: 333811
Number of successful extensions: 1590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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