ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast25d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) 155 8e-35
2gb|AY109653.1| Zea mays CL14796_1 mRNA sequence 149 5e-33
3ref|XM_550509.1| Oryza sativa (japonica cultivar-group), mRNA 147 2e-32
4ref|NM_185435.2| Oryza sativa (japonica cultivar-group), mRNA 147 2e-32
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 147 2e-32
6dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 147 2e-32
7dbj|AK060414.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 2e-32
8dbj|AK073098.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 1e-27
9gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 48 0.014
10gb|AY110553.1| Zea mays CL22344_1 mRNA sequence 44 0.21
11gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.21
12gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 0.83
13gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 0.83
14emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island 42 0.83
15gb|AF514806.1| Leishmania mexicana mexicana mu adaptin (mu) gene... 42 0.83
16emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 42 0.83
17gb|CP000249.1| Frankia sp. CcI3, complete genome 42 0.83
18gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 0.83
19dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 0.83
20gb|BC031713.1| Mus musculus RNA binding motif protein 12B, mRNA ... 40 3.3
21gb|BC054081.1| Mus musculus RNA binding motif protein 12B, mRNA ... 40 3.3
22gb|BC050844.1| Mus musculus RNA binding motif protein 12B, mRNA ... 40 3.3
23ref|XM_450781.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.3
24gb|AY327498.1| Actinoplanes missouriensis glycogen metabolism ge... 40 3.3
25gb|BC080741.1| Mus musculus RIKEN cDNA C430048L16 gene, mRNA (cD... 40 3.3
26gb|BC030408.1| Mus musculus RIKEN cDNA C430048L16 gene, mRNA (cD... 40 3.3
27ref|XM_534184.2| PREDICTED: Canis familiaris similar to CG8257-P... 40 3.3
28emb|AJ291450.1|ADI291450 Anopheles dirus A RAPD DNA fragment 40 3.3
29ref|NM_198957.2| Mus musculus RIKEN cDNA C430048L16 gene (C43004... 40 3.3
30ref|NM_028226.1| Mus musculus RNA binding motif protein 12B (Rbm... 40 3.3
31gb|AF246990.1|AF246990 Chlamydomonas reinhardtii flagellar autot... 40 3.3
32gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 3.3
33dbj|AK169895.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 3.3
34dbj|AK013872.1| Mus musculus 12 days embryo head cDNA, RIKEN ful... 40 3.3
35dbj|AK080943.1| Mus musculus 4 days neonate male adipose cDNA, R... 40 3.3
36dbj|AK030861.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 3.3
37dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
38gb|DQ314496.1| Uncultured prokaryote 2E01B sequence 40 3.3
39dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
40gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 3.3
41emb|AL929413.13| Mouse DNA sequence from clone RP24-215D6 on chr... 40 3.3
42emb|AL772167.13| Mouse DNA sequence from clone RP23-203A12 on ch... 40 3.3 
>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5)
          Length = 11618

 Score =  155 bits (78), Expect = 8e-35
 Identities = 161/188 (85%), Gaps = 3/188 (1%)
 Strand = Plus / Minus

                                                                        
Query: 71   tcaccatggcggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 130
            ||||||||| ||| || || ||||||||| ||||||||||| || |||||||||| ||||
Sbjct: 7390 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccgcggccgc 7331

                                                                        
Query: 131  gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 187
            || ||||| ||||||   |||||||||| |||||||   ||||||||||| ||||| |  
Sbjct: 7330 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 7271

                                                                        
Query: 188  gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 247
              ||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 7270 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 7211

                    
Query: 248  agggccgc 255
            ||||||||
Sbjct: 7210 agggccgc 7203
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>gb|AY109653.1| Zea mays CL14796_1 mRNA sequence
          Length = 1014

 Score =  149 bits (75), Expect = 5e-33
 Identities = 132/151 (87%)
 Strand = Plus / Minus

                                                                       
Query: 105 ctacggcggcggcctcccgcgcccgcgcgtcttccccggcgaccgcgtcgacccgccggc 164
           ||||||| ||||||| ||| | |||||| ||||||| ||||||||||| |||||||||||
Sbjct: 889 ctacggcagcggcctgccgaggccgcgcttcttcccgggcgaccgcgtggacccgccggc 830

                                                                       
Query: 165 ccccgtcaccgacgcgctcctctgctgggcgcgcgacgcgcactggtccatgggcggcct 224
             ||||||||||| |||| |||   ||||||||||| ||||||||||||||||||||| |
Sbjct: 829 gtccgtcaccgacccgctgctcgagtgggcgcgcgaagcgcactggtccatgggcggcat 770

                                          
Query: 225 cggcgccaagcgcctccgcctgcagggccgc 255
           | |||  ||||||||||||||||||||||||
Sbjct: 769 cagcgtgaagcgcctccgcctgcagggccgc 739
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>ref|XM_550509.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 752

 Score =  147 bits (74), Expect = 2e-32
 Identities = 160/188 (85%), Gaps = 3/188 (1%)
 Strand = Plus / Plus

                                                                       
Query: 71  tcaccatggcggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 130
           ||||||||| ||| || || ||||||||| ||||||||||| || ||||||| || ||||
Sbjct: 66  tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 125

                                                                       
Query: 131 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 187
           || ||||| ||||||   |||||||||| |||||||   ||||||||||| ||||| |  
Sbjct: 126 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 185

                                                                       
Query: 188 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 247
             ||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 186 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 245

                   
Query: 248 agggccgc 255
           ||||||||
Sbjct: 246 agggccgc 253
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>ref|NM_185435.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 957

 Score =  147 bits (74), Expect = 2e-32
 Identities = 160/188 (85%), Gaps = 3/188 (1%)
 Strand = Plus / Plus

                                                                       
Query: 71  tcaccatggcggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 130
           ||||||||| ||| || || ||||||||| ||||||||||| || ||||||| || ||||
Sbjct: 69  tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 128

                                                                       
Query: 131 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 187
           || ||||| ||||||   |||||||||| |||||||   ||||||||||| ||||| |  
Sbjct: 129 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 188

                                                                       
Query: 188 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 247
             ||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 189 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 248

                   
Query: 248 agggccgc 255
           ||||||||
Sbjct: 249 agggccgc 256
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  147 bits (74), Expect = 2e-32
 Identities = 160/188 (85%), Gaps = 3/188 (1%)
 Strand = Plus / Minus

                                                                          
Query: 71     tcaccatggcggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 130
              ||||||||| ||| || || ||||||||| ||||||||||| || ||||||| || ||||
Sbjct: 875302 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 875243

                                                                          
Query: 131    gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 187
              || ||||| ||||||   |||||||||| |||||||   ||||||||||| ||||| |  
Sbjct: 875242 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 875183

                                                                          
Query: 188    gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 247
                ||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 875182 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 875123

                      
Query: 248    agggccgc 255
              ||||||||
Sbjct: 875122 agggccgc 875115
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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score =  147 bits (74), Expect = 2e-32
 Identities = 160/188 (85%), Gaps = 3/188 (1%)
 Strand = Plus / Minus

                                                                         
Query: 71    tcaccatggcggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 130
             ||||||||| ||| || || ||||||||| ||||||||||| || ||||||| || ||||
Sbjct: 56197 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 56138

                                                                         
Query: 131   gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 187
             || ||||| ||||||   |||||||||| |||||||   ||||||||||| ||||| |  
Sbjct: 56137 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 56078

                                                                         
Query: 188   gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 247
               ||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 56077 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 56018

                     
Query: 248   agggccgc 255
             ||||||||
Sbjct: 56017 agggccgc 56010
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>dbj|AK060414.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-E09, full
           insert sequence
          Length = 774

 Score =  147 bits (74), Expect = 2e-32
 Identities = 160/188 (85%), Gaps = 3/188 (1%)
 Strand = Plus / Plus

                                                                       
Query: 71  tcaccatggcggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 130
           ||||||||| ||| || || ||||||||| ||||||||||| || ||||||| || ||||
Sbjct: 88  tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 147

                                                                       
Query: 131 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 187
           || ||||| ||||||   |||||||||| |||||||   ||||||||||| ||||| |  
Sbjct: 148 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 207

                                                                       
Query: 188 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 247
             ||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 208 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 267

                   
Query: 248 agggccgc 255
           ||||||||
Sbjct: 268 agggccgc 275
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>dbj|AK073098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003O07, full
           insert sequence
          Length = 956

 Score =  131 bits (66), Expect = 1e-27
 Identities = 152/180 (84%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                       
Query: 71  tcaccatggcggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 130
           ||||||||| ||| || || ||||||||| ||||||||||| || ||||||| || ||||
Sbjct: 69  tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 128

                                                                       
Query: 131 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 187
           || ||||| ||||||   |||||||||| |||||||   ||||||||||| ||||| |  
Sbjct: 129 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 188

                                                                       
Query: 188 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 247
             ||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 189 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 248
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 150    cgtcgacccgccggcccccgtcaccgac 177
              |||||||||||||||| |||||||||||
Sbjct: 244970 cgtcgacccgccggccaccgtcaccgac 244997
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>gb|AY110553.1| Zea mays CL22344_1 mRNA sequence
          Length = 656

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 230 ccaagcgcctccgcctgcaggg 251
           ||||||||||||||||||||||
Sbjct: 333 ccaagcgcctccgcctgcaggg 312
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 112     ggcggcctcccgcgcccgcgcg 133
               ||||||||||||||||||||||
Sbjct: 3896094 ggcggcctcccgcgcccgcgcg 3896115
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 217     ggcggcctcggcgccaagcgcctcc 241
               ||||||||||||||| |||||||||
Sbjct: 3528282 ggcggcctcggcgcccagcgcctcc 3528306
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 132     cgtcttccccggcgaccgcgtcgac 156
               |||||| ||||||||||||||||||
Sbjct: 1169632 cgtctttcccggcgaccgcgtcgac 1169608
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>emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island
          Length = 130000

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   agcgcctccgcctgcagggcc 253
             |||||||||||||||||||||
Sbjct: 11030 agcgcctccgcctgcagggcc 11010
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>gb|AF514806.1| Leishmania mexicana mexicana mu adaptin (mu) gene, complete cds
          Length = 3036

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 149  gcgtcgacccgccggcccccgtcac 173
            ||||||||||| |||||||||||||
Sbjct: 1982 gcgtcgacccggcggcccccgtcac 1958
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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 141    cggcgaccgcgtcgacccgccggcc 165
              ||||| |||||||||||||||||||
Sbjct: 108110 cggcgcccgcgtcgacccgccggcc 108134
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 141     cggcgaccgcgtcgacccgccggcc 165
               |||||||| ||||||||||||||||
Sbjct: 3387933 cggcgacctcgtcgacccgccggcc 3387957
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 130     cgcgtcttccccggcgaccgc 150
               |||||||||||||||||||||
Sbjct: 1001460 cgcgtcttccccggcgaccgc 1001480
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 132     cgtcttccccggcgaccgcgtcgac 156
               |||||||||||||| ||||||||||
Sbjct: 5671819 cgtcttccccggcggccgcgtcgac 5671843
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>gb|BC031713.1| Mus musculus RNA binding motif protein 12B, mRNA (cDNA clone
            IMAGE:3989672), containing frame-shift errors
          Length = 2881

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 2001 gaagaagacttcagacggcc 2020
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>gb|BC054081.1| Mus musculus RNA binding motif protein 12B, mRNA (cDNA clone
            IMAGE:6391191), partial cds
          Length = 2087

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 1137 gaagaagacttcagacggcc 1156
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>gb|BC050844.1| Mus musculus RNA binding motif protein 12B, mRNA (cDNA clone
            MGC:59390 IMAGE:6513134), complete cds
          Length = 3109

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 2205 gaagaagacttcagacggcc 2224
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>ref|XM_450781.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 168 cgtcaccgacgcgctcctctgctgggcgcgcgacgc 203
           |||| ||||||||||||| | |||||||| ||||||
Sbjct: 219 cgtcgccgacgcgctcctgtactgggcgcacgacgc 254
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>gb|AY327498.1| Actinoplanes missouriensis glycogen metabolism gene cluster, partial
            sequence
          Length = 4937

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 142  ggcgaccgcgtcgacccgccggcc 165
            ||||||||||||||||||| ||||
Sbjct: 4618 ggcgaccgcgtcgacccgcaggcc 4595
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>gb|BC080741.1| Mus musculus RIKEN cDNA C430048L16 gene, mRNA (cDNA clone MGC:91091
            IMAGE:30461213), complete cds
          Length = 3371

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 2043 gaagaagacttcagacggcc 2062
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>gb|BC030408.1| Mus musculus RIKEN cDNA C430048L16 gene, mRNA (cDNA clone
           IMAGE:5150022), partial cds
          Length = 1782

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  gaagaagacttcagacggcc 61
           ||||||||||||||||||||
Sbjct: 465 gaagaagacttcagacggcc 484
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>ref|XM_534184.2| PREDICTED: Canis familiaris similar to CG8257-PA (LOC476983), mRNA
          Length = 1992

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 ggcggcggcctcccgcgccc 128
           ||||||||||||||||||||
Sbjct: 214 ggcggcggcctcccgcgccc 233
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>emb|AJ291450.1|ADI291450 Anopheles dirus A RAPD DNA fragment
          Length = 895

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcgagagcgagcgagggaga 20
           ||||||||||||||||||||
Sbjct: 308 gcgagagcgagcgagggaga 327
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>ref|NM_198957.2| Mus musculus RIKEN cDNA C430048L16 gene (C430048L16Rik), mRNA
          Length = 3457

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 2128 gaagaagacttcagacggcc 2147
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>ref|NM_028226.1| Mus musculus RNA binding motif protein 12B (Rbm12b), mRNA
          Length = 3109

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 2205 gaagaagacttcagacggcc 2224
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>gb|AF246990.1|AF246990 Chlamydomonas reinhardtii flagellar autotomy protein Fa1p (FA1) mRNA,
            complete cds
          Length = 5753

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  gcctccgcctgcagggccgc 255
            ||||||||||||||||||||
Sbjct: 1780 gcctccgcctgcagggccgc 1761
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 131     gcgtcttccccggcgaccgc 150
               ||||||||||||||||||||
Sbjct: 1882725 gcgtcttccccggcgaccgc 1882706
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>dbj|AK169895.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630003B21
            product:Hypothetical RNA-binding region RNP-1 homolog
            [Mus musculus], full insert sequence
          Length = 2769

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 1552 gaagaagacttcagacggcc 1571
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>dbj|AK013872.1| Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched
            library, clone:3000004N20 product:hypothetical
            RNA-binding region RNP-1  (RNA recognition motif)
            containing protein, full insert sequence
          Length = 2361

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 1499 gaagaagacttcagacggcc 1518
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>dbj|AK080943.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430215C23 product:hypothetical
            RNA-binding region RNP-1  (RNA recognition motif)
            containing protein, full insert sequence
          Length = 3326

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 2058 gaagaagacttcagacggcc 2077
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>dbj|AK030861.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830433B01 product:hypothetical
            RNA-binding region RNP-1  (RNA recognition motif)
            containing protein, full insert sequence
          Length = 2946

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 2112 gaagaagacttcagacggcc 2131
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 168      cgtcaccgacgcgctcctctgctgggcgcgcgacgc 203
                |||| ||||||||||||| | |||||||| ||||||
Sbjct: 12724245 cgtcgccgacgcgctcctgtactgggcgcacgacgc 12724210



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 168      cgtcaccgacgcgctcctctgctgggcgcgcgacgc 203
                |||| ||||||||||||| | |||||||| ||||||
Sbjct: 12719980 cgtcgccgacgcgctcctgtactgggcgcacgacgc 12719945
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>gb|DQ314496.1| Uncultured prokaryote 2E01B sequence
          Length = 34665

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   cggcggcctcccgcgcccgc 130
             ||||||||||||||||||||
Sbjct: 25812 cggcggcctcccgcgcccgc 25831
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>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0027G10
          Length = 184759

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 168   cgtcaccgacgcgctcctctgctgggcgcgcgacgc 203
             |||| ||||||||||||| | |||||||| ||||||
Sbjct: 32022 cgtcgccgacgcgctcctgtactgggcgcacgacgc 31987



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 168   cgtcaccgacgcgctcctctgctgggcgcgcgacgc 203
             |||| ||||||||||||| | |||||||| ||||||
Sbjct: 27757 cgtcgccgacgcgctcctgtactgggcgcacgacgc 27722
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 142     ggcgaccgcgtcgacccgccggcc 165
               ||||||||||||||||||| ||||
Sbjct: 1080908 ggcgaccgcgtcgacccgcaggcc 1080931
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>emb|AL929413.13| Mouse DNA sequence from clone RP24-215D6 on chromosome 4, complete
             sequence
          Length = 117742

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    gaagaagacttcagacggcc 61
             ||||||||||||||||||||
Sbjct: 47208 gaagaagacttcagacggcc 47227
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>emb|AL772167.13| Mouse DNA sequence from clone RP23-203A12 on chromosome 4, complete
            sequence
          Length = 205104

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   gaagaagacttcagacggcc 61
            ||||||||||||||||||||
Sbjct: 5686 gaagaagacttcagacggcc 5667


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,548,267
Number of Sequences: 3902068
Number of extensions: 1548267
Number of successful extensions: 36356
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35507
Number of HSP's gapped (non-prelim): 835
length of query: 255
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 233
effective length of database: 17,147,199,772
effective search space: 3995297546876
effective search space used: 3995297546876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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