>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion,
              complete genome
          Length = 491515

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                            
Query: 88     tgcgacctgcccacaatgctgattctttccttcggttccaagagct 133
              ||||||||||||| |||||| || | | ||||||||||||||||||
Sbjct: 298059 tgcgacctgcccagaatgctcatacataccttcggttccaagagct 298104

>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion,
              complete genome
          Length = 490673

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                            
Query: 88     tgcgacctgcccacaatgctgattctttccttcggttccaagagct 133
              ||||||||||||| |||||| || | | ||||||||||||||||||
Sbjct: 297249 tgcgacctgcccagaatgctcatacataccttcggttccaagagct 297294

>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion,
              complete genome
          Length = 490669

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                            
Query: 88     tgcgacctgcccacaatgctgattctttccttcggttccaagagct 133
              ||||||||||||| |||||| || | | ||||||||||||||||||
Sbjct: 297246 tgcgacctgcccagaatgctcatacataccttcggttccaagagct 297291

>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
          Length = 490520

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                            
Query: 88     tgcgacctgcccacaatgctgattctttccttcggttccaagagct 133
              ||||||||||||| |||||| || | | ||||||||||||||||||
Sbjct: 297098 tgcgacctgcccagaatgctcatacataccttcggttccaagagct 297143

>dbj|D78336.1| Oryza sativa (japonica cultivar-group) mitochondrial DNA for
            ribosomal protein L2, ribosomal protein S19, complete cds
          Length = 4565

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                          
Query: 88   tgcgacctgcccacaatgctgattctttccttcggttccaagagct 133
            ||||||||||||| |||||| || | | ||||||||||||||||||
Sbjct: 3525 tgcgacctgcccagaatgctcatacataccttcggttccaagagct 3570

>emb|AL121763.25|HSJ914M10 Human DNA sequence from clone RP5-914M10 on chromosome 20q12 Contains
             part of the PTPRT gene for protein tyrosine phosphatase
             receptor type T, ESTs, STSs and GSSs, complete sequence
          Length = 123988

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 408   gtcgagaagctgatagactcccggt 432
             ||||||||||||||| |||||||||
Sbjct: 77572 gtcgagaagctgatacactcccggt 77548

>emb|AL049812.14|HS1121H13 Human DNA sequence from clone RP5-1121H13 on chromosome 20q12 Contains
             a neurofilament heavy polypeptide 200kDa (NEFH)
             pseudogene, the 3' end of the PTPRT gene for protein
             tyrosine phosphatase receptor type T and a CpG island,
             complete sequence
          Length = 105946

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 373   cagccacgcagtgccttgtgc 393
             |||||||||||||||||||||
Sbjct: 65150 cagccacgcagtgccttgtgc 65170

>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14,
             complete sequence
          Length = 139855

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 186   gcggcggccaccacagcagca 206
             |||||||||||||||||||||
Sbjct: 33516 gcggcggccaccacagcagca 33496

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 186      gcggcggccaccacagcagca 206
                |||||||||||||||||||||
Sbjct: 19382262 gcggcggccaccacagcagca 19382242

>gb|AC140312.5| Mus musculus BAC clone RP23-423L24 from chromosome 3, complete sequence
          Length = 200387

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 277    gcatgggaacatgggtgcaca 297
              |||||||||||||||||||||
Sbjct: 155934 gcatgggaacatgggtgcaca 155954

>gb|AC007250.2| Homo sapiens BAC clone RP11-334G22 from 2, complete sequence
          Length = 180557

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 234  ctcaactccaaggtgggaaac 254
            |||||||||||||||||||||
Sbjct: 1981 ctcaactccaaggtgggaaac 1961

>emb|X80170.1|OBRP12 O.berteriana rpl2 gene
          Length = 3550

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                        
Query: 6    ataatagccagccatcaaatggaaccgggcagcatggtggtgaacagcgactcctccaaa 65
            ||||||||||| |||||| ||||| ||||||  |||||| ||||  |||| |  ||||||
Sbjct: 3237 ataatagccagtcatcaattggaagcgggcaagatggtgatgaattgcgattggtccaaa 3296

                 
Query: 66   ccttc 70
            |||||
Sbjct: 3297 ccttc 3301

>ref|XM_545263.2| PREDICTED: Canis familiaris LOC488139 (LOC488139), mRNA
          Length = 1392

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 tgtctgacatccgcatggga 284
           ||||||||||||||||||||
Sbjct: 284 tgtctgacatccgcatggga 265

>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 4/11
          Length = 346406

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 307    tgcgtcacggccagggggcgaagc 330
              |||||||| |||||||||||||||
Sbjct: 223731 tgcgtcacagccagggggcgaagc 223708

>gb|AC012384.16| Homo sapiens 12q24.1-118.9-120.5 BAC RP11-256L11 (Roswell Park Cancer
              Institute Human BAC Library) complete sequence
          Length = 170118

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     cgggcagcatggtggtgaac 50
              ||||||||||||||||||||
Sbjct: 108764 cgggcagcatggtggtgaac 108745

>gb|DQ399521.1| Branchiostoma floridae LIM-homeodomain protein AmphiLim1/5 mRNA,
           complete cds
          Length = 1888

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  cgggcagcatggtggtgaac 50
           ||||||||||||||||||||
Sbjct: 429 cgggcagcatggtggtgaac 448

>dbj|BA000042.1| Nicotiana tabacum mitochondrial DNA, complete genome
          Length = 430597

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 6      ataatagccagccatcaaatggaaccgggcagcatggtggtgaa 49
              ||||||||||| |||||| ||||| ||||||  |||||| ||||
Sbjct: 361161 ataatagccagtcatcaattggaagcgggcaagatggtgatgaa 361118


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,603,205
Number of Sequences: 3902068
Number of extensions: 3603205
Number of successful extensions: 59711
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59670
Number of HSP's gapped (non-prelim): 41
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)