>VE2_HPV04 (Q07849) Regulatory protein E2|
          Length = 402

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -1

Query: 161 TGRTSSGTGAWRIRLRRHTSYASCSRGSYPTKTRNGSGDGG 39
           T  TS  T   R+R RR    +    G  P K R G G GG
Sbjct: 243 TSTTSPETEGVRLRRRRREGKSGPGSGETPRKRRRGGGRGG 283

>CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5) (Cholinesterase-related
           cell division controller)
          Length = 1512

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/74 (28%), Positives = 26/74 (35%)
 Frame = +1

Query: 7   LATAQIQTMTVPPSPEPFRVFVGYDPREHEAYEVCRRSLIRHAPVPLDVRPVRQSDLRAS 186
           L   Q Q +  PP P P             A      S       PL+V+ + +   RA 
Sbjct: 41  LPLLQPQLLQPPPPPPPLLFLAAPGTAAAAAAAAAASSSCFSPGPPLEVKRLARGKRRAG 100

Query: 187 GLYWRARGPTEGTE 228
           G   R RGP  G E
Sbjct: 101 GRQKRRRGPRAGQE 114

>VE2_HPV65 (Q07851) Regulatory protein E2|
          Length = 402

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 161 TGRTSSGTGAWRIRLRRHTSYASCSRGSYPTKTRNGSGDGG 39
           T  TS  T   R+R  R    +    G  P+K R G G GG
Sbjct: 243 TSTTSPETSGLRVRRGRRQRKSGPGPGETPSKRRRGGGRGG 283

>YJ9S_YEAST (P47181) Protein YJR154w|
          Length = 346

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 167 WRTGRTSSGTGAWRIRLRRHTSYASCSRGSYPTKTRNGSGDGGTVM 30
           ++ G  +S  G  R  +  HT++ +C R  Y T+T  G G   T M
Sbjct: 156 YKVGAGASDQGYHREDIVHHTTHQACERFQYGTETMVGLGVAFTDM 201

>UVE1_SCHPO (Q10988) UV-damage endonuclease (EC 3.-.-.-) (UVDE)|
          Length = 599

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 40  PPSPEPFRVFVGYDPREHEAYEVCRRSLIRHAPVPLDV 153
           PP      + +    +E   +E+CRR  +++ P PL++
Sbjct: 524 PPCDPTMDLMIEAKEKEQAVFELCRRYELQNPPCPLEI 561

>OGG1_HUMAN (O15527) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA|
           glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic
           site) lyase (EC 4.2.99.18) (AP lyase)]
          Length = 345

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +1

Query: 106 VCRRSLIRHAPVPLDVRP--VRQSDLRASGLYWRARGPTEGTEFSFTRFLTPFLARYRGW 279
           +C  +L +   VP+DV    + Q D        +A+GP+  T      F       Y GW
Sbjct: 254 ICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGW 313

Query: 280 ALFIDCDFLYLADVAE 327
           A  +    L+ AD+ +
Sbjct: 314 AQAV----LFSADLRQ 325

>HTPG_GLUOX (Q5FS51) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 623

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 190 LYWRARGPTEGTEFSFTRFLTP--FLARYRGWALFIDCDFLYLADVAELI 333
           L+WRA G TE T   F     P  F+ + R   + +    +++ D AEL+
Sbjct: 265 LHWRAEGVTEFTALLFLPSARPFDFMEQSRESRIHLHVRRMFITDEAELV 314

>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5)
          Length = 1511

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 40  PPSPEPFRVFVGYDPREHEAYEVCRRSLIRHAP-VPLDVRPVRQSDLRASGLYWRARGPT 216
           PP P P  +F+        A  V   S    +P  PL+V+ + +   R  G   R RGP 
Sbjct: 51  PPPPPPPLLFLAAPGAAAAAAAVAAASSSCFSPGPPLEVKRLARGKRRPGGRRKRRRGPR 110

Query: 217 EGTE 228
            G E
Sbjct: 111 AGQE 114

>BCL2_BOVIN (O02718) Apoptosis regulator Bcl-2|
          Length = 229

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +1

Query: 136 PVPLDVRPVRQSDLRASGLYWRARGPTEGTEFSFTRFLTPFLARYR 273
           P P  V PV    LR +G  +  R   +  E S    LTPF AR R
Sbjct: 74  PAPSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARER 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,539,499
Number of Sequences: 219361
Number of extensions: 426355
Number of successful extensions: 1598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)