ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast23f08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475513.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1128 Score = 161 bits (81), Expect = 2e-36 Identities = 147/169 (86%) Strand = Plus / Plus Query: 98 acctcgcccacctcctcgccgcgcgccgcctcaccacggcgaaggacgtgctctcgctgc 157 ||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct: 41 acctcgcccacatcctcgccgcgcgccgcctcaccaccgccaaggacgtgctgtcgctgc 100 Query: 158 cggaggtggagctcatgtccctgctcgacgcgggcctcgccaccgcccgcgacgccgtgc 217 ||||||||||||||||| | | |||||||| ||| || ||||||||||| |||||| Sbjct: 101 cggaggtggagctcatgggcgtcctcgacgccggcatccacaccgcccgcgccgccgtcg 160 Query: 218 ggcacgtcagcgagttcgcctgccctccctgccagacggcgctcgcgct 266 |||||||||||| ||||||||||||| | ||| |||||||| ||||| Sbjct: 161 cccacgtcagcgagatcgcctgccctccgtaccaaacggcgcttgcgct 209 Score = 105 bits (53), Expect = 1e-19 Identities = 119/141 (84%) Strand = Plus / Plus Query: 301 cggctggccaccacgctctgcgggctggatgaggcgctgggcggaggtatccccctgggc 360 |||||||||||||||||| |||| |||||||||| || ||||| |||||| || Sbjct: 241 cggctggccaccacgctccgcggattggatgaggcattgcatggaggaatccccgcaggg 300 Query: 361 aagctcaccgaggtcgtcgggccctccgggatcggcaagacgcagttttgtctgaagctt 420 |||||||| |||||||| |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct: 301 aagctcactgaggtcgttgggccctcggggattggcaagacccagttctgtctgaagctt 360 Query: 421 gcgctgctagcaaccttacca 441 || |||||||||| |||||| Sbjct: 361 gctttgctagcaacattacca 381
>dbj|AK107571.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D03, full insert sequence Length = 1646 Score = 161 bits (81), Expect = 2e-36 Identities = 147/169 (86%) Strand = Plus / Plus Query: 98 acctcgcccacctcctcgccgcgcgccgcctcaccacggcgaaggacgtgctctcgctgc 157 ||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct: 82 acctcgcccacatcctcgccgcgcgccgcctcaccaccgccaaggacgtgctgtcgctgc 141 Query: 158 cggaggtggagctcatgtccctgctcgacgcgggcctcgccaccgcccgcgacgccgtgc 217 ||||||||||||||||| | | |||||||| ||| || ||||||||||| |||||| Sbjct: 142 cggaggtggagctcatgggcgtcctcgacgccggcatccacaccgcccgcgccgccgtcg 201 Query: 218 ggcacgtcagcgagttcgcctgccctccctgccagacggcgctcgcgct 266 |||||||||||| ||||||||||||| | ||| |||||||| ||||| Sbjct: 202 cccacgtcagcgagatcgcctgccctccgtaccaaacggcgcttgcgct 250 Score = 105 bits (53), Expect = 1e-19 Identities = 119/141 (84%) Strand = Plus / Plus Query: 301 cggctggccaccacgctctgcgggctggatgaggcgctgggcggaggtatccccctgggc 360 |||||||||||||||||| |||| |||||||||| || ||||| |||||| || Sbjct: 282 cggctggccaccacgctccgcggattggatgaggcattgcatggaggaatccccgcaggg 341 Query: 361 aagctcaccgaggtcgtcgggccctccgggatcggcaagacgcagttttgtctgaagctt 420 |||||||| |||||||| |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct: 342 aagctcactgaggtcgttgggccctcggggattggcaagacccagttctgtctgaagctt 401 Query: 421 gcgctgctagcaaccttacca 441 || |||||||||| |||||| Sbjct: 402 gctttgctagcaacattacca 422
>dbj|AK106510.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H03, full insert sequence Length = 1441 Score = 161 bits (81), Expect = 2e-36 Identities = 147/169 (86%) Strand = Plus / Plus Query: 98 acctcgcccacctcctcgccgcgcgccgcctcaccacggcgaaggacgtgctctcgctgc 157 ||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct: 144 acctcgcccacatcctcgccgcgcgccgcctcaccaccgccaaggacgtgctgtcgctgc 203 Query: 158 cggaggtggagctcatgtccctgctcgacgcgggcctcgccaccgcccgcgacgccgtgc 217 ||||||||||||||||| | | |||||||| ||| || ||||||||||| |||||| Sbjct: 204 cggaggtggagctcatgggcgtcctcgacgccggcatccacaccgcccgcgccgccgtcg 263 Query: 218 ggcacgtcagcgagttcgcctgccctccctgccagacggcgctcgcgct 266 |||||||||||| ||||||||||||| | ||| |||||||| ||||| Sbjct: 264 cccacgtcagcgagatcgcctgccctccgtaccaaacggcgcttgcgct 312 Score = 105 bits (53), Expect = 1e-19 Identities = 119/141 (84%) Strand = Plus / Plus Query: 301 cggctggccaccacgctctgcgggctggatgaggcgctgggcggaggtatccccctgggc 360 |||||||||||||||||| |||| |||||||||| || ||||| |||||| || Sbjct: 344 cggctggccaccacgctccgcggattggatgaggcattgcatggaggaatccccgcaggg 403 Query: 361 aagctcaccgaggtcgtcgggccctccgggatcggcaagacgcagttttgtctgaagctt 420 |||||||| |||||||| |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct: 404 aagctcactgaggtcgttgggccctcggggattggcaagacccagttctgtctgaagctt 463 Query: 421 gcgctgctagcaaccttacca 441 || |||||||||| |||||| Sbjct: 464 gctttgctagcaacattacca 484
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 140 aggacgtgctctcgctgccggaggtggagctcatgtccctgctcgacgcgggcctcgcca 199 |||||||||| |||||||||||||||||||||||| | | |||||||| ||| || || Sbjct: 85602 aggacgtgctgtcgctgccggaggtggagctcatgggcgtcctcgacgccggcatccaca 85543 Query: 200 ccgcccgcgacgccgtgcggcacgtcagcgagttcgcctgccctcc 245 ||||||||| |||||| |||||||||||| ||||||||||||| Sbjct: 85542 ccgcccgcgccgccgtcgcccacgtcagcgagatcgcctgccctcc 85497 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 98 acctcgcccacctcctcgccgcgcgccgcctcaccac 134 ||||||||||| ||||||||||||||||||||||||| Sbjct: 85724 acctcgcccacatcctcgccgcgcgccgcctcaccac 85688 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 301 cggctggccaccacgctctgcgggctggatgaggcgctgggcggaggtatccccctgggc 360 |||||||||||||||||| |||| |||||||||| || ||||| |||||| || Sbjct: 85293 cggctggccaccacgctccgcggattggatgaggcattgcatggaggaatccccgcaggg 85234 Query: 361 aagctcaccgaggtcgtcgggccctccgggatcggcaagac 401 |||||||| |||||||| |||||||| ||||| |||||||| Sbjct: 85233 aagctcactgaggtcgttgggccctcggggattggcaagac 85193 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Minus Query: 402 gcagttttgtctgaagcttgcgctgctagcaaccttacca 441 |||||| |||||||||||||| |||||||||| |||||| Sbjct: 84363 gcagttctgtctgaagcttgctttgctagcaacattacca 84324
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 140 aggacgtgctctcgctgccggaggtggagctcatgtccctgctcgacgcgggcctcgcca 199 |||||||||| |||||||||||||||||||||||| | | |||||||| ||| || || Sbjct: 1129991 aggacgtgctgtcgctgccggaggtggagctcatgggcgtcctcgacgccggcatccaca 1129932 Query: 200 ccgcccgcgacgccgtgcggcacgtcagcgagttcgcctgccctcc 245 ||||||||| |||||| |||||||||||| ||||||||||||| Sbjct: 1129931 ccgcccgcgccgccgtcgcccacgtcagcgagatcgcctgccctcc 1129886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 98 acctcgcccacctcctcgccgcgcgccgcctcaccac 134 ||||||||||| ||||||||||||||||||||||||| Sbjct: 1130113 acctcgcccacatcctcgccgcgcgccgcctcaccac 1130077 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 301 cggctggccaccacgctctgcgggctggatgaggcgctgggcggaggtatccccctgggc 360 |||||||||||||||||| |||| |||||||||| || ||||| |||||| || Sbjct: 1129682 cggctggccaccacgctccgcggattggatgaggcattgcatggaggaatccccgcaggg 1129623 Query: 361 aagctcaccgaggtcgtcgggccctccgggatcggcaagac 401 |||||||| |||||||| |||||||| ||||| |||||||| Sbjct: 1129622 aagctcactgaggtcgttgggccctcggggattggcaagac 1129582 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Minus Query: 402 gcagttttgtctgaagcttgcgctgctagcaaccttacca 441 |||||| |||||||||||||| |||||||||| |||||| Sbjct: 1128752 gcagttctgtctgaagcttgctttgctagcaacattacca 1128713
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 89.7 bits (45), Expect = 7e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 317 tctgcgggctggatgaggcgctgggcggaggtatccccctgggcaagctcaccgaggtcg 376 ||||||||| |||||| |||||||||||| ||||||||||||||||||||| | ||||| Sbjct: 182541 tctgcgggccggatgaagcgctgggcggatgtatccccctgggcaagctcaacaaggtca 182600 Query: 377 tcgggccctccgggatcggcaagacgcag 405 || |||||| ||||| | |||||||||| Sbjct: 182601 tcaggcccttggggattgacaagacgcag 182629
>gb|AC144700.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017H17, complete sequence Length = 156331 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 105 ccacctcctcgccgcgcgccgcctc 129 ||||||||||||||||||||||||| Sbjct: 76125 ccacctcctcgccgcgcgccgcctc 76101
>gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085C16, complete sequence Length = 156069 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 105 ccacctcctcgccgcgcgccgcctc 129 ||||||||||||||||||||||||| Sbjct: 60503 ccacctcctcgccgcgcgccgcctc 60527
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 105 ccacctcctcgccgcgcgccgcctc 129 ||||||||||||||||||||||||| Sbjct: 22022507 ccacctcctcgccgcgcgccgcctc 22022531 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 105 ccacctcctcgccgcgcgccgcctc 129 ||||||||||||||||||||||||| Sbjct: 21865282 ccacctcctcgccgcgcgccgcctc 21865258
>dbj|AK101994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079I07, full insert sequence Length = 3401 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 105 ccacctcctcgccgcgcgccgcctc 129 ||||||||||||||||||||||||| Sbjct: 141 ccacctcctcgccgcgcgccgcctc 165
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 105 ccacctcctcgccgcgcgccgcctc 129 ||||||||||||||||||||||||| Sbjct: 22332418 ccacctcctcgccgcgcgccgcctc 22332442 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 105 ccacctcctcgccgcgcgccgcctc 129 ||||||||||||||||||||||||| Sbjct: 22175481 ccacctcctcgccgcgcgccgcctc 22175457
>ref|XM_844504.1| PREDICTED: Canis familiaris similar to Transcription factor Dp-1 (E2F dimerization partner 1) (DRTF1-polypeptide-1) (DRTF1) (LOC607720), mRNA Length = 1281 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 287 tggggggcggcggccggctggcc 309 ||||||||||||||||||||||| Sbjct: 808 tggggggcggcggccggctggcc 786
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Minus Query: 193 ctcgccaccgcccgcgacgccgtgcggcacg 223 |||||| |||||||||| ||||||||||||| Sbjct: 6300 ctcgccgccgcccgcgaggccgtgcggcacg 6270
>gb|AY826836.1| Isochrysis galbana clone ISATPG1 chloroplast ATP synthase gamma subunit mRNA, partial cds; nuclear gene for chloroplast product Length = 900 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 259 ctcgcgctgctggaggagcggg 280 |||||||||||||||||||||| Sbjct: 328 ctcgcgctgctggaggagcggg 307
>dbj|AB054887.1| Streptomyces violaceus rhoF, rhoG, rhoH, rhoI genes, partial and complete cds Length = 4133 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 185 acgcgggcctcgccaccgcccgcgacgccg 214 ||||||||||||||||||||| ||||||| Sbjct: 209 acgcgggcctcgccaccgccctggacgccg 238
>ref|XM_360699.1| Magnaporthe grisea 70-15 hypothetical protein (MG03242.4) partial mRNA Length = 2427 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 tcgcgctgctggaggagcggg 280 ||||||||||||||||||||| Sbjct: 431 tcgcgctgctggaggagcggg 451
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 301 cggctggccaccacgctctgcgggctgga 329 ||||| |||||||||||| |||||||||| Sbjct: 57043 cggctcgccaccacgctcggcgggctgga 57015
>gb|BC035013.1| Homo sapiens RAB11 family interacting protein 5 (class I), mRNA (cDNA clone MGC:33435 IMAGE:5269818), complete cds Length = 4279 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 275 agcgggtgaggctggggggcggcggccgg 303 |||||||||||| ||| |||||||||||| Sbjct: 1 agcgggtgaggcggggaggcggcggccgg 29
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 ccacctcctcgccgcgcgccgcctc 129 ||||| ||||||||||||||||||| Sbjct: 2951527 ccaccgcctcgccgcgcgccgcctc 2951551
>ref|XM_463153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 828 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 cccacctcctcgccgcgcgccgcc 127 |||||||||||||||| ||||||| Sbjct: 149 cccacctcctcgccgctcgccgcc 126
>ref|XM_463715.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1329 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccacctcctcgccgcgcgcc 124 |||||||||||||||||||| Sbjct: 531 ccacctcctcgccgcgcgcc 550
>ref|XM_478280.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1501 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctcatgtccctgctcgacgc 188 |||||||||||||||||||| Sbjct: 93 ctcatgtccctgctcgacgc 112
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 100896 cctcctcgccgcgcgccgcc 100915
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tggtctcggacatgtgcctg 90 |||||||||||||||||||| Sbjct: 257239 tggtctcggacatgtgcctg 257258
>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence Length = 140012 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cccacctcctcgccgcgcgccgcc 127 |||||||||||||||| ||||||| Sbjct: 114955 cccacctcctcgccgctcgccgcc 114978
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 catgtccctgctcgacgcgg 190 |||||||||||||||||||| Sbjct: 3258918 catgtccctgctcgacgcgg 3258899
>ref|XM_655796.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3284.2), mRNA Length = 1035 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tgctggaggagcgggtgagg 285 |||||||||||||||||||| Sbjct: 884 tgctggaggagcgggtgagg 903
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cccacctcctcgccgcgcgccgcc 127 |||||||||||||||| ||||||| Sbjct: 22845024 cccacctcctcgccgctcgccgcc 22845047
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cccacctcctcgccgcgcgccgcc 127 |||||||||||||||| ||||||| Sbjct: 47554 cccacctcctcgccgctcgccgcc 47577
>gb|AY334361.1| Petunia x hybrida clone 3 integrated petunia clearing vein virus, partial sequence Length = 7975 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ggcaagctcaccgaggtcgt 377 |||||||||||||||||||| Sbjct: 7931 ggcaagctcaccgaggtcgt 7912
>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence Length = 294829 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ccgggatcggcaagacgcag 405 |||||||||||||||||||| Sbjct: 234789 ccgggatcggcaagacgcag 234770
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gcgggctggatgaggcgctg 339 |||||||||||||||||||| Sbjct: 3856127 gcgggctggatgaggcgctg 3856108
>emb|AL079335.29|HSJ132F21 Human DNA sequence from clone RP1-132F21 on chromosome 20 Contains the 5' end a novel gene, the C20orf118 gene, the 3' end of the SAMHD1 gene for SAM domain and HD domain 1 and a CpG island, complete sequence Length = 71117 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gtgaggctggggggcggcgg 299 |||||||||||||||||||| Sbjct: 24108 gtgaggctggggggcggcgg 24127
>gb|AY305868.1| Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP31 (ZFP31) mRNA, complete cds Length = 773 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 cccacctcctcgccgcgcgccgcc 127 |||||||||||||||| ||||||| Sbjct: 94 cccacctcctcgccgctcgccgcc 71
>ref|XM_965404.1| PREDICTED: Tribolium castaneum similar to CG14888-PA (LOC659070), mRNA Length = 1917 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 262 gcgctgctggaggagcgggtgaggctgg 289 |||||||||||||||||| || |||||| Sbjct: 130 gcgctgctggaggagcggctgcggctgg 157
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ccgcgacgccgtgcggcacg 223 |||||||||||||||||||| Sbjct: 64254 ccgcgacgccgtgcggcacg 64235
>gb|AY289189.1| Oryza sativa (japonica cultivar-group) zinc finger transcription factor OsZFP34 mRNA, complete cds Length = 730 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 cccacctcctcgccgcgcgccgcc 127 |||||||||||||||| ||||||| Sbjct: 87 cccacctcctcgccgctcgccgcc 64
>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome Length = 101016 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cgccaccgcccgcgacgccg 214 |||||||||||||||||||| Sbjct: 86886 cgccaccgcccgcgacgccg 86867
>ref|NM_001004089.1| Rattus norvegicus signal-induced proliferation-associated gene 1 (Sipa1), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gggctggatgaggcgctggg 341 |||||||||||||||||||| Sbjct: 691 gggctggatgaggcgctggg 710
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 54600 cctcctcgccgcgcgccgcc 54581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 54578 cctcctcgccgcgcgccgcc 54559 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 54556 cctcctcgccgcgcgccgcc 54537
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 gccagacggcgctcgcgctgctgg 271 ||||||||||||||||||| |||| Sbjct: 342089 gccagacggcgctcgcgctcctgg 342112
>dbj|AK137578.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830146F08 product:signal-induced proliferation associated gene 1, full insert sequence Length = 3538 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gggctggatgaggcgctggg 341 |||||||||||||||||||| Sbjct: 897 gggctggatgaggcgctggg 916
>dbj|AK149669.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530008N21 product:signal-induced proliferation associated gene 1, full insert sequence Length = 3520 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gggctggatgaggcgctggg 341 |||||||||||||||||||| Sbjct: 897 gggctggatgaggcgctggg 916
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gggcaagctcaccgaggtcg 376 |||||||||||||||||||| Sbjct: 1381973 gggcaagctcaccgaggtcg 1381954
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ccacctcctcgccgcgcgcc 124 |||||||||||||||||||| Sbjct: 548039 ccacctcctcgccgcgcgcc 548020
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 273678 cctcctcgccgcgcgccgcc 273697 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 273656 cctcctcgccgcgcgccgcc 273675 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 216827 cctcctcgccgcgcgccgcc 216808
>dbj|AK028151.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310038F18 product:signal-induced proliferation associated gene 1, full insert sequence Length = 2802 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gggctggatgaggcgctggg 341 |||||||||||||||||||| Sbjct: 161 gggctggatgaggcgctggg 180
>ref|NM_001024572.1| Bos taurus sarcoma antigen NY-SAR-91 (FLJ11730), mRNA Length = 1401 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gctctgcgggctggatgagg 334 |||||||||||||||||||| Sbjct: 8 gctctgcgggctggatgagg 27
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctcatgtccctgctcgacgc 188 |||||||||||||||||||| Sbjct: 18992344 ctcatgtccctgctcgacgc 18992363
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 27483314 cctcctcgccgcgcgccgcc 27483333 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 4690052 cctcctcgccgcgcgccgcc 4690033
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cccacctcctcgccgcgcgccgcc 127 |||||||||||||||| ||||||| Sbjct: 22838052 cccacctcctcgccgctcgccgcc 22838075
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccacctcctcgccgcgcgcc 124 |||||||||||||||||||| Sbjct: 41705372 ccacctcctcgccgcgcgcc 41705391
>gb|AC140998.5| Homo sapiens X BAC RP11-428I5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 90420 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 gaggtatccccctgggcaagctca 367 ||||||||||||||| |||||||| Sbjct: 28570 gaggtatccccctggccaagctca 28593
>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466H10 Length = 176530 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccacctcctcgccgcgcgcc 124 |||||||||||||||||||| Sbjct: 120974 ccacctcctcgccgcgcgcc 120993
>gb|AC134563.5| Mus musculus BAC clone RP24-179M18 from chromosome 19, complete sequence Length = 163878 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gggctggatgaggcgctggg 341 |||||||||||||||||||| Sbjct: 121435 gggctggatgaggcgctggg 121454
>dbj|AP005610.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0032M14 Length = 146636 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 52872 cctcctcgccgcgcgccgcc 52891
>dbj|AP005192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485A07 Length = 166397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 102383 cctcctcgccgcgcgccgcc 102402
>dbj|AB091474.1| Rattus norvegicus SPA-1 mRNA for GTPase-activating protein, complete cds Length = 3123 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gggctggatgaggcgctggg 341 |||||||||||||||||||| Sbjct: 691 gggctggatgaggcgctggg 710
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 52651 cctcctcgccgcgcgccgcc 52632
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0430F03 Length = 183095 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctcatgtccctgctcgacgc 188 |||||||||||||||||||| Sbjct: 94329 ctcatgtccctgctcgacgc 94348
>gb|BT021857.1| Bos taurus sarcoma antigen NY-SAR-91 (FLJ11730), mRNA, complete cds Length = 1401 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gctctgcgggctggatgagg 334 |||||||||||||||||||| Sbjct: 8 gctctgcgggctggatgagg 27
>ref|XM_316078.2| Anopheles gambiae str. PEST ENSANGP00000012440 (ENSANGG00000009951), partial mRNA Length = 1731 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gggcggcggccggctggcca 310 |||||||||||||||||||| Sbjct: 559 gggcggcggccggctggcca 540
>ref|NM_210972.1| Eremothecium gossypii AFR071Wp (AFR071W), mRNA Length = 4734 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ccacctcctcgccgcgcgcc 124 |||||||||||||||||||| Sbjct: 208 ccacctcctcgccgcgcgcc 189
>dbj|AK070038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035D03, full insert sequence Length = 1277 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctcctcgccgcgcgccgcc 127 |||||||||||||||||||| Sbjct: 399 cctcctcgccgcgcgccgcc 380
>dbj|AK067710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120G17, full insert sequence Length = 2031 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctcatgtccctgctcgacgc 188 |||||||||||||||||||| Sbjct: 17 ctcatgtccctgctcgacgc 36
>dbj|AK059016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A10, full insert sequence Length = 1501 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctcatgtccctgctcgacgc 188 |||||||||||||||||||| Sbjct: 93 ctcatgtccctgctcgacgc 112
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gctgctggaggagcgggtga 283 |||||||||||||||||||| Sbjct: 2213824 gctgctggaggagcgggtga 2213843
>emb|AJ251697.1|PGR251697 Phyllocoptes gracilis 18S rRNA gene (partial), 5.8S rRNA gene (partial) and internal transcribed spacer 1 (ITS1) Length = 604 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 cagttttgtctgaagcttgc 422 |||||||||||||||||||| Sbjct: 172 cagttttgtctgaagcttgc 153
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cggcgctcgcgctgctggag 273 |||||||||||||||||||| Sbjct: 444236 cggcgctcgcgctgctggag 444217
>emb|AJ297573.1|PGR297573 Phyllocoptes gracilis 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2) Length = 1617 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 cagttttgtctgaagcttgc 422 |||||||||||||||||||| Sbjct: 172 cagttttgtctgaagcttgc 153 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,063,768 Number of Sequences: 3902068 Number of extensions: 3063768 Number of successful extensions: 83114 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80861 Number of HSP's gapped (non-prelim): 2245 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
