ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast23e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 0.39
2gb|AC101660.25| Mus musculus chromosome 15, clone RP23-4I22, com... 42 0.39
3gb|AY108865.1| Zea mays PCO075691 mRNA sequence 40 1.6
4emb|AL157936.12| Human DNA sequence from clone RP11-279I21 on ch... 38 6.2
5gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 6.2
6gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 38 6.2
7gb|AC103842.2| Homo sapiens chromosome 8, clone RP11-367J23, com... 38 6.2
8gb|AC104051.3| Homo sapiens chromosome 8, clone CTD-2339F6, comp... 38 6.2
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 6.2
10gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 6.2

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 104     cgatgccgcgccacatcgcgc 124
               |||||||||||||||||||||
Sbjct: 3201171 cgatgccgcgccacatcgcgc 3201151



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>gb|AC101660.25| Mus musculus chromosome 15, clone RP23-4I22, complete sequence
          Length = 188464

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    acaagtcctcactcaccactg 69
             |||||||||||||||||||||
Sbjct: 51172 acaagtcctcactcaccactg 51192



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>gb|AY108865.1| Zea mays PCO075691 mRNA sequence
          Length = 425

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 97  gcctccacgatgccgcgccacatcgcgctgct 128
           |||||||| |||||||||||  ||||||||||
Sbjct: 65  gcctccacaatgccgcgccatctcgcgctgct 96



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>emb|AL157936.12| Human DNA sequence from clone RP11-279I21 on chromosome 9q22.2-31.1
            Contains the 5' end of gene FLJ14675, and the 5' end of a
            novel gene, complete sequence
          Length = 124559

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 53   gtcctcactcaccactgac 71
            |||||||||||||||||||
Sbjct: 4380 gtcctcactcaccactgac 4398



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 113     gccacatcgcgctgctgtt 131
               |||||||||||||||||||
Sbjct: 3612034 gccacatcgcgctgctgtt 3612016



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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 105     gatgccgcgccacatcgcg 123
               |||||||||||||||||||
Sbjct: 2505838 gatgccgcgccacatcgcg 2505820



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>gb|AC103842.2| Homo sapiens chromosome 8, clone RP11-367J23, complete sequence
          Length = 150506

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 42    aaccagcacaagtcctcactcaccact 68
             |||||||||||| |||| |||||||||
Sbjct: 10164 aaccagcacaagccctctctcaccact 10190



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>gb|AC104051.3| Homo sapiens chromosome 8, clone CTD-2339F6, complete sequence
          Length = 120723

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 42    aaccagcacaagtcctcactcaccact 68
             |||||||||||| |||| |||||||||
Sbjct: 67101 aaccagcacaagccctctctcaccact 67127



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 93     tatggcctccacgatgccg 111
              |||||||||||||||||||
Sbjct: 788634 tatggcctccacgatgccg 788616



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 105    gatgccgcgccacatcgcgctgc 127
              ||||||||||||||||| |||||
Sbjct: 748510 gatgccgcgccacatcgagctgc 748532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 504,000
Number of Sequences: 3902068
Number of extensions: 504000
Number of successful extensions: 29584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29381
Number of HSP's gapped (non-prelim): 203
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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