ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast23a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473853.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2337 Score = 313 bits (158), Expect = 3e-82 Identities = 410/494 (82%) Strand = Plus / Plus Query: 1 gtgctcgtcgacaagtgcggcgactccgtgctcgtcgacctggagcggcgggcgctcgac 60 |||||||||||||||||||||||| | | ||||| |||||| ||||| ||||| |||||| Sbjct: 670 gtgctcgtcgacaagtgcggcgacccagcgctcgccgacctcgagcgccgggccctcgac 729 Query: 61 ctccaccgcgcgctcggcgccacgctcgacctcgtccgccgcctcgccctactcgtctcc 120 ||| ||||||| ||||| | | |||||||||||||||| ||||||| | ||||||||| Sbjct: 730 ctctaccgcgccgccggcgtctccctcgacctcgtccgccacctcgccgtcctcgtctcc 789 Query: 121 gaccacatggggggtgcattgagatcggaggacggggacctgtacatgcggtggagggcc 180 |||||||||||||| || ||| | ||||||||||||||||||| ||||||||||| ||| Sbjct: 790 gaccacatggggggcgcgttgcggtcggaggacggggacctgttcatgcggtggaaggcg 849 Query: 181 agcagcaagcggctgcgcaagcagcagaagagcgtcgtcgtccccatcggccgcctgtcc 240 ||||||| |||| | |||| ||| | | |||||||||||||||||||| |||| ||| Sbjct: 850 gtgagcaagcagctgaggaagcggcacaggtgcgtcgtcgtccccatcggcagcctctcc 909 Query: 241 atcgggttctgcaggcatcgcgccattctcttcaaggctctggcagattttatcggcctg 300 ||||| |||||| | || |||||||| ||||||||| || || || || |||||||| Sbjct: 910 atcggcttctgccgccaccgcgccatcctcttcaagagcctcgccgacttcatcggcctt 969 Query: 301 ccgtgccgaatcgcgcaaggctgcaagtactgctctgcgcctcaccggtcatcttgcctt 360 || ||||| |||||||| ||||||||||||||||| ||||| ||||| || || ||||| Sbjct: 970 ccctgccggatcgcgcagggctgcaagtactgctccgcgccgcaccgctcgtcctgcctc 1029 Query: 361 gtcaaaattgacaatgacagaagatattcaagggagtacgtcgtggacctcgtcgttgtg 420 ||||| || ||||| || ||||| | | ||||||||||||||| ||||||||||||| | Sbjct: 1030 gtcaagatcgacaacgagagaaggtttgtaagggagtacgtcgtcgacctcgtcgttgag 1089 Query: 421 ccagggagcatctccaacccagactcatcgatcaacggccagctactctcctctgtgtct 480 || || || || || |||||||| || ||||| |||||| | |||||||| ||| || Sbjct: 1090 ccgggaagactcagcagtccagactcgtctatcaatggccagttgctctcctccgtgcct 1149 Query: 481 tcgcctttcaagac 494 || ||||||||||| Sbjct: 1150 tcacctttcaagac 1163
>dbj|AK120898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030I02, full insert sequence Length = 2788 Score = 313 bits (158), Expect = 3e-82 Identities = 410/494 (82%) Strand = Plus / Plus Query: 1 gtgctcgtcgacaagtgcggcgactccgtgctcgtcgacctggagcggcgggcgctcgac 60 |||||||||||||||||||||||| | | ||||| |||||| ||||| ||||| |||||| Sbjct: 808 gtgctcgtcgacaagtgcggcgacccagcgctcgccgacctcgagcgccgggccctcgac 867 Query: 61 ctccaccgcgcgctcggcgccacgctcgacctcgtccgccgcctcgccctactcgtctcc 120 ||| ||||||| ||||| | | |||||||||||||||| ||||||| | ||||||||| Sbjct: 868 ctctaccgcgccgccggcgtctccctcgacctcgtccgccacctcgccgtcctcgtctcc 927 Query: 121 gaccacatggggggtgcattgagatcggaggacggggacctgtacatgcggtggagggcc 180 |||||||||||||| || ||| | ||||||||||||||||||| ||||||||||| ||| Sbjct: 928 gaccacatggggggcgcgttgcggtcggaggacggggacctgttcatgcggtggaaggcg 987 Query: 181 agcagcaagcggctgcgcaagcagcagaagagcgtcgtcgtccccatcggccgcctgtcc 240 ||||||| |||| | |||| ||| | | |||||||||||||||||||| |||| ||| Sbjct: 988 gtgagcaagcagctgaggaagcggcacaggtgcgtcgtcgtccccatcggcagcctctcc 1047 Query: 241 atcgggttctgcaggcatcgcgccattctcttcaaggctctggcagattttatcggcctg 300 ||||| |||||| | || |||||||| ||||||||| || || || || |||||||| Sbjct: 1048 atcggcttctgccgccaccgcgccatcctcttcaagagcctcgccgacttcatcggcctt 1107 Query: 301 ccgtgccgaatcgcgcaaggctgcaagtactgctctgcgcctcaccggtcatcttgcctt 360 || ||||| |||||||| ||||||||||||||||| ||||| ||||| || || ||||| Sbjct: 1108 ccctgccggatcgcgcagggctgcaagtactgctccgcgccgcaccgctcgtcctgcctc 1167 Query: 361 gtcaaaattgacaatgacagaagatattcaagggagtacgtcgtggacctcgtcgttgtg 420 ||||| || ||||| || ||||| | | ||||||||||||||| ||||||||||||| | Sbjct: 1168 gtcaagatcgacaacgagagaaggtttgtaagggagtacgtcgtcgacctcgtcgttgag 1227 Query: 421 ccagggagcatctccaacccagactcatcgatcaacggccagctactctcctctgtgtct 480 || || || || || |||||||| || ||||| |||||| | |||||||| ||| || Sbjct: 1228 ccgggaagactcagcagtccagactcgtctatcaatggccagttgctctcctccgtgcct 1287 Query: 481 tcgcctttcaagac 494 || ||||||||||| Sbjct: 1288 tcacctttcaagac 1301
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 149 bits (75), Expect = 1e-32 Identities = 198/239 (82%) Strand = Plus / Plus Query: 145 tcggaggacggggacctgtacatgcggtggagggccagcagcaagcggctgcgcaagcag 204 ||||||||||||||||||| ||||||||||| ||| ||||||| |||| | |||| | Sbjct: 108234 tcggaggacggggacctgttcatgcggtggaaggcggtgagcaagcagctgaggaagcgg 108293 Query: 205 cagaagagcgtcgtcgtccccatcggccgcctgtccatcgggttctgcaggcatcgcgcc 264 || | | |||||||||||||||||||| |||| |||||||| |||||| | || |||||| Sbjct: 108294 cacaggtgcgtcgtcgtccccatcggcagcctctccatcggcttctgccgccaccgcgcc 108353 Query: 265 attctcttcaaggctctggcagattttatcggcctgccgtgccgaatcgcgcaaggctgc 324 || ||||||||| || || || || |||||||| || ||||| |||||||| |||||| Sbjct: 108354 atcctcttcaagagcctcgccgacttcatcggccttccctgccggatcgcgcagggctgc 108413 Query: 325 aagtactgctctgcgcctcaccggtcatcttgccttgtcaaaattgacaatgacagaag 383 ||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || ||||| Sbjct: 108414 aagtactgctccgcgccgcaccgctcgtcctgcctcgtcaagatcgacaacgagagaag 108472 Score = 127 bits (64), Expect = 4e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 1 gtgctcgtcgacaagtgcggcgactccgtgctcgtcgacctggagcggcgggcgctcgac 60 |||||||||||||||||||||||| | | ||||| |||||| ||||| ||||| |||||| Sbjct: 106932 gtgctcgtcgacaagtgcggcgacccagcgctcgccgacctcgagcgccgggccctcgac 106991 Query: 61 ctccaccgcgcgctcggcgccacgctcgacctcgtccgccgcctcgccctactcgtctcc 120 ||| ||||||| ||||| | | |||||||||||||||| ||||||| | ||||||||| Sbjct: 106992 ctctaccgcgccgccggcgtctccctcgacctcgtccgccacctcgccgtcctcgtctcc 107051 Query: 121 gaccacatgggg 132 |||||||||||| Sbjct: 107052 gaccacatgggg 107063 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 391 agggagtacgtcgtggacctcgtcgttgtgccagggagcatctccaacccagactcatcg 450 |||||||||||||| ||||||||||||| ||| || || || || |||||||| || Sbjct: 108564 agggagtacgtcgtcgacctcgtcgttgagccgggaagactcagcagtccagactcgtct 108623 Query: 451 atcaacggccagctactctcctctgtgtcttcgcctttcaagac 494 ||||| |||||| | |||||||| ||| |||| ||||||||||| Sbjct: 108624 atcaatggccagttgctctcctccgtgccttcacctttcaagac 108667
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 149 bits (75), Expect = 1e-32 Identities = 198/239 (82%) Strand = Plus / Plus Query: 145 tcggaggacggggacctgtacatgcggtggagggccagcagcaagcggctgcgcaagcag 204 ||||||||||||||||||| ||||||||||| ||| ||||||| |||| | |||| | Sbjct: 31010861 tcggaggacggggacctgttcatgcggtggaaggcggtgagcaagcagctgaggaagcgg 31010920 Query: 205 cagaagagcgtcgtcgtccccatcggccgcctgtccatcgggttctgcaggcatcgcgcc 264 || | | |||||||||||||||||||| |||| |||||||| |||||| | || |||||| Sbjct: 31010921 cacaggtgcgtcgtcgtccccatcggcagcctctccatcggcttctgccgccaccgcgcc 31010980 Query: 265 attctcttcaaggctctggcagattttatcggcctgccgtgccgaatcgcgcaaggctgc 324 || ||||||||| || || || || |||||||| || ||||| |||||||| |||||| Sbjct: 31010981 atcctcttcaagagcctcgccgacttcatcggccttccctgccggatcgcgcagggctgc 31011040 Query: 325 aagtactgctctgcgcctcaccggtcatcttgccttgtcaaaattgacaatgacagaag 383 ||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || ||||| Sbjct: 31011041 aagtactgctccgcgccgcaccgctcgtcctgcctcgtcaagatcgacaacgagagaag 31011099 Score = 127 bits (64), Expect = 4e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 1 gtgctcgtcgacaagtgcggcgactccgtgctcgtcgacctggagcggcgggcgctcgac 60 |||||||||||||||||||||||| | | ||||| |||||| ||||| ||||| |||||| Sbjct: 31009559 gtgctcgtcgacaagtgcggcgacccagcgctcgccgacctcgagcgccgggccctcgac 31009618 Query: 61 ctccaccgcgcgctcggcgccacgctcgacctcgtccgccgcctcgccctactcgtctcc 120 ||| ||||||| ||||| | | |||||||||||||||| ||||||| | ||||||||| Sbjct: 31009619 ctctaccgcgccgccggcgtctccctcgacctcgtccgccacctcgccgtcctcgtctcc 31009678 Query: 121 gaccacatgggg 132 |||||||||||| Sbjct: 31009679 gaccacatgggg 31009690 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 391 agggagtacgtcgtggacctcgtcgttgtgccagggagcatctccaacccagactcatcg 450 |||||||||||||| ||||||||||||| ||| || || || || |||||||| || Sbjct: 31011191 agggagtacgtcgtcgacctcgtcgttgagccgggaagactcagcagtccagactcgtct 31011250 Query: 451 atcaacggccagctactctcctctgtgtcttcgcctttcaagac 494 ||||| |||||| | |||||||| ||| |||| ||||||||||| Sbjct: 31011251 atcaatggccagttgctctcctccgtgccttcacctttcaagac 31011294
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 51 ggcgctcgacctccaccgcgcgc 73 ||||||||||||||||||||||| Sbjct: 5548487 ggcgctcgacctccaccgcgcgc 5548509
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 gctcgacctccaccgcgcgctc 75 |||||||||||||||||||||| Sbjct: 129001 gctcgacctccaccgcgcgctc 129022 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cgctcgacctcgtccgccgc 102 |||||||||||||||||||| Sbjct: 4538093 cgctcgacctcgtccgccgc 4538112 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccgcgcgctcggcgccacgc 85 |||||||||||||||||||| Sbjct: 3147791 ccgcgcgctcggcgccacgc 3147772
>ref|NM_118581.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT4G24480 mRNA, complete cds Length = 3544 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 352 tcttgccttgtcaaaattgacaatgacag 380 |||||||||||||| |||||| ||||||| Sbjct: 1801 tcttgccttgtcaagattgacgatgacag 1829
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 cggcgactccgtgctcgtcga 38 ||||||||||||||||||||| Sbjct: 82972 cggcgactccgtgctcgtcga 82952
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 tccaccgcgcgctcggcgcca 82 ||||||||||||||||||||| Sbjct: 2552243 tccaccgcgcgctcggcgcca 2552263
>ref|XM_781852.1| PREDICTED: Strongylocentrotus purpuratus similar to nucleoporin 188kDa (LOC581874), mRNA Length = 5949 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 caaggctgcaagtactgctct 336 ||||||||||||||||||||| Sbjct: 4326 caaggctgcaagtactgctct 4346
>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project) Length = 108459 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 352 tcttgccttgtcaaaattgacaatgacag 380 |||||||||||||| |||||| ||||||| Sbjct: 103123 tcttgccttgtcaagattgacgatgacag 103151
>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61 Length = 198402 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 352 tcttgccttgtcaaaattgacaatgacag 380 |||||||||||||| |||||| ||||||| Sbjct: 119780 tcttgccttgtcaagattgacgatgacag 119808
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 cggcgactccgtgctcgtcga 38 ||||||||||||||||||||| Sbjct: 3715300 cggcgactccgtgctcgtcga 3715280
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 209 agagcgtcgtcgtccccatcggccg 233 |||||||||||||| |||||||||| Sbjct: 19346896 agagcgtcgtcgtctccatcggccg 19346920
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1029_F04 Length = 141834 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 209 agagcgtcgtcgtccccatcggccg 233 |||||||||||||| |||||||||| Sbjct: 74901 agagcgtcgtcgtctccatcggccg 74925
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 ctggagcggcgggcgctcgacctcc 64 |||||||||||||| |||||||||| Sbjct: 1446459 ctggagcggcgggcactcgacctcc 1446483 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gtccatcgggttctgcaggc 256 |||||||||||||||||||| Sbjct: 9091217 gtccatcgggttctgcaggc 9091236 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cgcgctcggcgccacgctcg 88 |||||||||||||||||||| Sbjct: 4631525 cgcgctcggcgccacgctcg 4631506 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cctcgtccgccgcctcgccc 109 |||||||||||||||||||| Sbjct: 787689 cctcgtccgccgcctcgccc 787670
>emb|BX276118.7| Mouse DNA sequence from clone RP23-452O23 on chromosome X, complete sequence Length = 119329 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 aggctgcaagtactgctctgc 338 ||||||||||||||||||||| Sbjct: 3842 aggctgcaagtactgctctgc 3862 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 aggctgcaagtactgctctg 337 |||||||||||||||||||| Sbjct: 105902 aggctgcaagtactgctctg 105921
>gb|AY108328.1| Zea mays PCO147425 mRNA sequence Length = 945 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tcgacctcgtccgccgcctcg 106 ||||||||||||||||||||| Sbjct: 401 tcgacctcgtccgccgcctcg 421
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 cggcgactccgtgctcgtcga 38 ||||||||||||||||||||| Sbjct: 3723994 cggcgactccgtgctcgtcga 3723974
>gb|AY502106.1| Azospirillum brasilense strain FP9 NtrC mutant form (ntrC) gene, complete cds Length = 1743 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 acctcgtccgccgcctcgcc 108 |||||||||||||||||||| Sbjct: 1284 acctcgtccgccgcctcgcc 1303
>gb|AY502105.1| Azospirillum brasilense strain FP8 NtrC mutant form (ntrC) gene, complete cds Length = 1748 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 acctcgtccgccgcctcgcc 108 |||||||||||||||||||| Sbjct: 1282 acctcgtccgccgcctcgcc 1301
>gb|AC120375.11| Mus musculus chromosome 14, clone RP24-123H11, complete sequence Length = 158760 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 ttgacaatgacagaagatat 387 |||||||||||||||||||| Sbjct: 103280 ttgacaatgacagaagatat 103299
>gb|AC133191.3| Mus musculus chromosome 18 clone RP23-390K15, complete sequence Length = 212060 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 gttgtgccagggagcatctc 434 |||||||||||||||||||| Sbjct: 8588 gttgtgccagggagcatctc 8569
>gb|AC006316.2| Homo sapiens PAC clone RP4-672O11 from 7, complete sequence Length = 143369 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 tgacaatgacagaagatatt 388 |||||||||||||||||||| Sbjct: 127790 tgacaatgacagaagatatt 127771
>gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence Length = 202386 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 aggctgcaagtactgctctg 337 |||||||||||||||||||| Sbjct: 4730 aggctgcaagtactgctctg 4749
>gb|AC113598.8| Mus musculus chromosome 14, clone RP23-476N23, complete sequence Length = 214461 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 ttgacaatgacagaagatat 387 |||||||||||||||||||| Sbjct: 204173 ttgacaatgacagaagatat 204154
>gb|AC113528.8| Mus musculus chromosome 18, clone RP23-419F17, complete sequence Length = 217309 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 gttgtgccagggagcatctc 434 |||||||||||||||||||| Sbjct: 57848 gttgtgccagggagcatctc 57829
>emb|AL357354.10| Human DNA sequence from clone RP11-465C5 on chromosome Xq21.2-22.1 Contains a phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase (PAICS) pseudogene, complete sequence Length = 194612 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 aaattgacaatgacagaaga 384 |||||||||||||||||||| Sbjct: 112476 aaattgacaatgacagaaga 112457
>emb|Z37984.2|ABNTRBCG Azospirillum brasilense ORF5, nifR3-like, ntrB, ntrC and ntrY genes Length = 8995 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 acctcgtccgccgcctcgcc 108 |||||||||||||||||||| Sbjct: 4592 acctcgtccgccgcctcgcc 4611
>emb|X67684.1|ABNTRBC A.brasilense ntrB and ntrC genes Length = 3831 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 acctcgtccgccgcctcgcc 108 |||||||||||||||||||| Sbjct: 2385 acctcgtccgccgcctcgcc 2404
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 82 acgctcgacctcgtccgccgcctcgccc 109 |||||||| |||| |||||||||||||| Sbjct: 4077155 acgctcgatctcgaccgccgcctcgccc 4077182
>gb|AE012120.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 28 of 460 of the complete genome Length = 11505 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cagcagcaagcggctgcgca 199 |||||||||||||||||||| Sbjct: 6513 cagcagcaagcggctgcgca 6494
>gb|AC079385.18| Homo sapiens 12q BAC RP11-482D24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181609 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 aaattgacaatgacagaaga 384 |||||||||||||||||||| Sbjct: 24914 aaattgacaatgacagaaga 24933
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cgtcgacctggagcggcggg 52 |||||||||||||||||||| Sbjct: 1993892 cgtcgacctggagcggcggg 1993911
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cagcagcaagcggctgcgca 199 |||||||||||||||||||| Sbjct: 305215 cagcagcaagcggctgcgca 305196
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 68 gcgcgctcggcgccacgctcgacctcgtccgc 99 |||||||||||||| || ||||| |||||||| Sbjct: 408130 gcgcgctcggcgccgcggtcgacatcgtccgc 408161
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 ctcgacctcgtccgccgcctcgcc 108 |||||||||||||||| ||||||| Sbjct: 9950537 ctcgacctcgtccgcctcctcgcc 9950514 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 ctcgacctcgtccgccgcctcgcc 108 |||||||||||||||| ||||||| Sbjct: 9921630 ctcgacctcgtccgcctcctcgcc 9921653
>gb|AF325719.1|AF325719 Pennisetum ciliare calmodulin-like protein mRNA, complete cds Length = 965 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cctccaccgcgcgctcggcg 79 |||||||||||||||||||| Sbjct: 333 cctccaccgcgcgctcggcg 352
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 cgcgctcggcgccacgctcg 88 |||||||||||||||||||| Sbjct: 3120114 cgcgctcggcgccacgctcg 3120133
>gb|AF204401.1|AF204401 Streptomyces chrysomallus actinomycin synthetase III (acmC) gene, complete cds Length = 12744 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgtcgtccccatcggccgcc 235 |||||||||||||||||||| Sbjct: 9900 cgtcgtccccatcggccgcc 9919
>gb|AC147918.2| Xenopus tropicalis clone CH216-8N16, complete sequence Length = 210128 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aaaattgacaatgacagaag 383 |||||||||||||||||||| Sbjct: 94445 aaaattgacaatgacagaag 94426
>dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021H05 Length = 159111 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 ctcgacctcgtccgccgcctcgcc 108 |||||||||||||||| ||||||| Sbjct: 24102 ctcgacctcgtccgcctcctcgcc 24079
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 ctcgacctcgtccgccgcctcgcc 108 |||||||||||||||| ||||||| Sbjct: 147172 ctcgacctcgtccgcctcctcgcc 147149 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 ctcgacctcgtccgccgcctcgcc 108 |||||||||||||||| ||||||| Sbjct: 118265 ctcgacctcgtccgcctcctcgcc 118288
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cgtcgacctggagcggcggg 52 |||||||||||||||||||| Sbjct: 81881 cgtcgacctggagcggcggg 81900
>emb|AL772319.13| Mouse DNA sequence from clone RP23-397E2 on chromosome 4, complete sequence Length = 206709 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 ccagggagcatctccaaccc 440 |||||||||||||||||||| Sbjct: 51648 ccagggagcatctccaaccc 51667 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,292,549 Number of Sequences: 3902068 Number of extensions: 3292549 Number of successful extensions: 67562 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65952 Number of HSP's gapped (non-prelim): 1602 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
