ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast22e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chloro... 64 1e-07
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
3dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
4dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
5dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-07
6dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-07
7dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-07
8dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-07
9dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-07
10dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRN... 64 1e-07
11emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding... 60 2e-06
12emb|AJ234427.1|HVU234427 Hordeum vulgare partial mRNA; clone cMW... 50 0.002
13ref|NM_197383.1| Oryza sativa (japonica cultivar-group) putaive ... 46 0.029
14gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 geno... 46 0.029
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.029
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.029
17dbj|AK107812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.029
18dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.029
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.029
20ref|XM_609577.2| PREDICTED: Bos taurus similar to matrix metallo... 44 0.12
21gb|BC029947.1| Homo sapiens, clone IMAGE:5196281, mRNA 44 0.12
22dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 44 0.12
23gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 42 0.46
24gb|AY105774.1| Zea mays PCO068188 mRNA sequence 42 0.46
25gb|AC154521.2| Mus musculus BAC clone RP23-473O6 from chromosome... 40 1.8
26gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.8
27gb|AC135917.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.8
28gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 1.8
29emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 1.8
30gb|AC091548.11| Mus musculus Strain C57BL6/J Chromosome 11 BAC, ... 40 1.8
31emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chr... 40 1.8
32emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on... 40 1.8
33emb|BX883042.1| Rattus norvegicus chromosome 20, major histocomp... 40 1.8
34gb|AC021188.6| Homo sapiens BAC clone RP11-759A7 from 2, complet... 40 1.8
35gb|AC009220.10|AC009220 Homo sapiens chromosome 7 clone RP11-365... 40 1.8
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
37ref|NM_033097.1| Rattus norvegicus vacuolar protein sorting 52 (... 40 1.8
38gb|AC018644.6|AC018644 Homo sapiens chromosome 7 clone RP11-383F... 40 1.8
39dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 1.8
40dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 1.8
41emb|AJ223831.1|RNO223831 Rattus norvegicus Are1 and Rps18 genes,... 40 1.8
42emb|AJ223830.1|RNO223830 Rattus norvegicus mRNA for ARE1 protein 40 1.8
43gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 1.8
44emb|AL645851.8| Mouse DNA sequence from clone RP23-193A16 on chr... 40 1.8
45gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 38 7.1
46gb|BC027782.1| Mus musculus DnaJ (Hsp40) homolog, subfamily B, m... 38 7.1
47gb|AC138003.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.1
48gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.1
49gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 38 7.1
50gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 38 7.1
51gb|AY359576.1| Zea mays B73 acc oxidase (ACO35) gene, complete cds 38 7.1
52gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.1
53gb|AC020606.7| Homo sapiens BAC clone RP11-563O5 from 7, complet... 38 7.1
54gb|BC048902.1| Mus musculus DnaJ (Hsp40) homolog, subfamily B, m... 38 7.1
55ref|XM_799661.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 7.1
56ref|XM_805848.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 7.1
57gb|AC160109.2| Mus musculus BAC clone RP24-169I22 from chromosom... 38 7.1
58gb|CP000316.1| Polaromonas sp. JS666, complete genome 38 7.1
59gb|AY316293.1| Triticum aestivum SKP1/ASK1-like protein (skp1) m... 38 7.1
60gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genom... 38 7.1
61emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome... 38 7.1
62emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 38 7.1
63emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 38 7.1
64emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4,... 38 7.1
65gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, comple... 38 7.1
66gb|AC091672.11| Papio anubis clone rp41-367l20, complete sequence 38 7.1
67gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 38 7.1
68dbj|AK158972.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 38 7.1
69dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.1
70dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.1
71dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.1
72dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.1
73dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.1
74ref|XM_320938.2| Anopheles gambiae str. PEST ENSANGP00000017682 ... 38 7.1
75gb|AF092536.1|AF092536 Mus musculus heat shock protein hsp40-3 g... 38 7.1
76dbj|AB042837.1| Acipenser transmontanus mitochondrial DNA, compl... 38 7.1
77gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.1
78gb|AC005259.1|AC005259 Mouse BAC CitbCJ7 219m7, genomic sequence... 38 7.1
79emb|AL683809.7| Mouse DNA sequence from clone RP23-440B21 on chr... 38 7.1
80emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chro... 38 7.1
81dbj|AB001404.1| Hepatitis C virus gene for E2 protein, hypervari... 38 7.1
82emb|AL731648.6| Mouse DNA sequence from clone RP23-35I10 on chro... 38 7.1 
>emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chlorophyll a/b-binding
           protein
          Length = 1664

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 93  ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
           ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 449 ggccgcggccaccatggcgctctcctccccggtgatggcc 488
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 93       ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
                ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 10792987 ggccgcggccaccatggcgctctcctccccggtgatggcc 10793026
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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 93    ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
             ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 16710 ggccgcggccaccatggcgctctcctccccggtgatggcc 16749
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                      
Query: 93     ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
              ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 129605 ggccgcggccaccatggcgctctcctccccggtgatggcc 129644
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>dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G02, full
           insert sequence
          Length = 1013

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 93  ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
           ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 55  ggccgcggccaccatggcgctctcctccccggtgatggcc 94
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>dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E05, full
           insert sequence
          Length = 1021

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 93  ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
           ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 60  ggccgcggccaccatggcgctctcctccccggtgatggcc 99
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>dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D01, full
           insert sequence
          Length = 1056

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 93  ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
           ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 62  ggccgcggccaccatggcgctctcctccccggtgatggcc 101
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>dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E08, full
           insert sequence
          Length = 1235

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 93  ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
           ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 60  ggccgcggccaccatggcgctctcctccccggtgatggcc 99
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>dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H02, full
           insert sequence
          Length = 1045

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 93  ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
           ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 60  ggccgcggccaccatggcgctctcctccccggtgatggcc 99
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>dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRNA for type I
           light-harvesting chlorophyll a/b binding protein of
           photosystem II (LHCPII), complete cds
          Length = 1022

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 93  ggccgcggcgaccatggcgctctcctccccggcgatggcc 132
           ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 41  ggccgcggccaccatggcgctctcctccccggtgatggcc 80
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>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein
          Length = 2100

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 103 accatggcgctctcctccccggcgatggccggcacccc 140
           ||||||||| |||||||| |||||||||||||||||||
Sbjct: 904 accatggcgatctcctccacggcgatggccggcacccc 941
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>emb|AJ234427.1|HVU234427 Hordeum vulgare partial mRNA; clone cMWG0701.uni
          Length = 312

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 101 cgaccatggcgctctcctccccggcgatg 129
           |||||||||||||||||||||| ||||||
Sbjct: 70  cgaccatggcgctctcctcccccgcgatg 98
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>ref|NM_197383.1| Oryza sativa (japonica cultivar-group) putaive mitochondrial inner
           membrane protein (OSJNBb0018B10.5), mRNA
          Length = 588

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 96  cgcggcgaccatggcgctctcctccccggcg 126
           ||||||||||||||||||||||  |||||||
Sbjct: 414 cgcggcgaccatggcgctctccatcccggcg 384
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>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete
             sequence
          Length = 135789

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 96    cgcggcgaccatggcgctctcctccccggcg 126
             ||||||||||||||||||||||  |||||||
Sbjct: 34037 cgcggcgaccatggcgctctccatcccggcg 34067
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 96       cgcggcgaccatggcgctctcctccccggcg 126
                ||||||||||||||||||||||  |||||||
Sbjct: 19576846 cgcggcgaccatggcgctctccatcccggcg 19576876
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 80       agcgagcgatggcggccgcggcg 102
                |||||||||||||||||||||||
Sbjct: 25864797 agcgagcgatggcggccgcggcg 25864819
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>dbj|AK107812.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F03, full
           insert sequence
          Length = 944

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 96  cgcggcgaccatggcgctctcctccccggcg 126
           ||||||||||||||||||||||  |||||||
Sbjct: 519 cgcggcgaccatggcgctctccatcccggcg 489
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>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1339_F05
          Length = 132708

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 80    agcgagcgatggcggccgcggcg 102
             |||||||||||||||||||||||
Sbjct: 35245 agcgagcgatggcggccgcggcg 35267
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.029
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 96       cgcggcgaccatggcgctctcctccccggcg 126
                ||||||||||||||||||||||  |||||||
Sbjct: 19588122 cgcggcgaccatggcgctctccatcccggcg 19588152
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>ref|XM_609577.2| PREDICTED: Bos taurus similar to matrix metalloproteinase 25
           preproprotein (LOC531092), mRNA
          Length = 2217

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 105 catggcgctctcctccccggcg 126
           ||||||||||||||||||||||
Sbjct: 504 catggcgctctcctccccggcg 483
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>gb|BC029947.1| Homo sapiens, clone IMAGE:5196281, mRNA
          Length = 114

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 103 accatggcgctctcctccccggcgat 128
           |||||||||||||||||||| |||||
Sbjct: 46  accatggcgctctcctcccccgcgat 71
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 106     atggcgctctcctccccggcgatggc 131
               ||||||||||| ||||||||||||||
Sbjct: 1774135 atggcgctctcgtccccggcgatggc 1774110
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 113     tctcctccccggcgatggccggcac 137
               ||||||||| |||||||||||||||
Sbjct: 3767946 tctcctcccgggcgatggccggcac 3767970
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>gb|AY105774.1| Zea mays PCO068188 mRNA sequence
          Length = 708

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  gagcgatggcggccgcggcga 103
           |||||||||||||||||||||
Sbjct: 183 gagcgatggcggccgcggcga 203
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>gb|AC154521.2| Mus musculus BAC clone RP23-473O6 from chromosome 13, complete sequence
          Length = 211603

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    gcctcctactgtcactgccagcct 43
             |||||||| |||||||||||||||
Sbjct: 57457 gcctcctagtgtcactgccagcct 57480
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>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09,
              complete sequence
          Length = 155525

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     gctagctagctagcacgcag 81
              ||||||||||||||||||||
Sbjct: 129180 gctagctagctagcacgcag 129199
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>gb|AC135917.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0048K05, complete sequence
          Length = 104254

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   gctagctagctagcacgcag 81
            ||||||||||||||||||||
Sbjct: 1341 gctagctagctagcacgcag 1360
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     gagcgatggcggccgcggcg 102
              ||||||||||||||||||||
Sbjct: 976457 gagcgatggcggccgcggcg 976438
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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     cgatggcggccgcggcgacc 105
              ||||||||||||||||||||
Sbjct: 139052 cgatggcggccgcggcgacc 139033
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>gb|AC091548.11| Mus musculus Strain C57BL6/J Chromosome 11 BAC, RP23-193K14, complete
            sequence
          Length = 214157

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   cactgccagcctcagctcac 51
            ||||||||||||||||||||
Sbjct: 6371 cactgccagcctcagctcac 6352
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>emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chromosome 1p35.1-36.13
           Contains the C1QA gene for complement component 1( q
           subcomponent, alpha polypeptide), the C1QG gene for
           complement component 1 (q subcomponent, gamma
           polypeptide), the C1QB gene for complement component 1
           (q subcomponent, beta polypeptide), the 5' end of the
           EPHB2 gene for EphB2 and a CpG island, complete sequence
          Length = 87320

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  ctgccagcctcagctcactc 53
           ||||||||||||||||||||
Sbjct: 106 ctgccagcctcagctcactc 125
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>emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on chromosome 1p35.2-36.13
            Contains a novel gene (KIAA0478) and the EPHA8 gene for
            ephrin receptor EphA8 precursor, complete sequence
          Length = 160705

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   ctgccagcctcagctcactc 53
            ||||||||||||||||||||
Sbjct: 1895 ctgccagcctcagctcactc 1876
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>emb|BX883042.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 1/11
          Length = 348780

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 88     atggcggccgcggcgaccatggcg 111
              ||||| ||||||||||||||||||
Sbjct: 129888 atggcagccgcggcgaccatggcg 129911
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>gb|AC021188.6| Homo sapiens BAC clone RP11-759A7 from 2, complete sequence
          Length = 236486

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     agcaaggctagctagctagc 75
              ||||||||||||||||||||
Sbjct: 100770 agcaaggctagctagctagc 100789
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>gb|AC009220.10|AC009220 Homo sapiens chromosome 7 clone RP11-365F18, complete sequence
          Length = 184520

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 88    atggcggccgcggcgaccatggcg 111
             |||||||||||||||||| |||||
Sbjct: 79976 atggcggccgcggcgaccctggcg 79999
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 62       gctagctagctagcacgcag 81
                ||||||||||||||||||||
Sbjct: 24615004 gctagctagctagcacgcag 24615023
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>ref|NM_033097.1| Rattus norvegicus vacuolar protein sorting 52 (yeast) (Vps52), mRNA
          Length = 2299

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  atggcggccgcggcgaccatggcg 111
           ||||| ||||||||||||||||||
Sbjct: 1   atggcagccgcggcgaccatggcg 24
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>gb|AC018644.6|AC018644 Homo sapiens chromosome 7 clone RP11-383F6, complete sequence
          Length = 193643

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 88     atggcggccgcggcgaccatggcg 111
              |||||||||||||||||| |||||
Sbjct: 182316 atggcggccgcggcgaccctggcg 182339
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    ggcgctctcctccccggcga 127
              ||||||||||||||||||||
Sbjct: 334985 ggcgctctcctccccggcga 334966
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      gcgatggcggccgcggcgac 104
               ||||||||||||||||||||
Sbjct: 2301594 gcgatggcggccgcggcgac 2301575
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>emb|AJ223831.1|RNO223831 Rattus norvegicus Are1 and Rps18 genes, intergenic sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  atggcggccgcggcgaccatggcg 111
           ||||| ||||||||||||||||||
Sbjct: 474 atggcagccgcggcgaccatggcg 497
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>emb|AJ223830.1|RNO223830 Rattus norvegicus mRNA for ARE1 protein
          Length = 2299

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  atggcggccgcggcgaccatggcg 111
           ||||| ||||||||||||||||||
Sbjct: 1   atggcagccgcggcgaccatggcg 24
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 108     ggcgctctcctccccggcga 127
               ||||||||||||||||||||
Sbjct: 1550476 ggcgctctcctccccggcga 1550495
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>emb|AL645851.8| Mouse DNA sequence from clone RP23-193A16 on chromosome 11, complete
              sequence
          Length = 112037

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     cactgccagcctcagctcac 51
              ||||||||||||||||||||
Sbjct: 105661 cactgccagcctcagctcac 105680
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 92      cggccgcggcgaccatggcgctc 114
               ||||||||||||| |||||||||
Sbjct: 1241878 cggccgcggcgacgatggcgctc 1241856
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>gb|BC027782.1| Mus musculus DnaJ (Hsp40) homolog, subfamily B, member 5, mRNA
           (cDNA clone IMAGE:5354756)
          Length = 5091

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  actgtcactgccagcctca 45
           |||||||||||||||||||
Sbjct: 155 actgtcactgccagcctca 173
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>gb|AC138003.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0020C11, complete sequence
          Length = 30321

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 62   gctagctagctagcacgca 80
            |||||||||||||||||||
Sbjct: 7172 gctagctagctagcacgca 7154
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>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
           OSJNBa0004P24, complete sequence
          Length = 137721

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 62  gctagctagctagcacgca 80
           |||||||||||||||||||
Sbjct: 785 gctagctagctagcacgca 803
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>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17
              map near S16403, complete sequence
          Length = 172238

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 62     gctagctagctagcacgca 80
              |||||||||||||||||||
Sbjct: 145689 gctagctagctagcacgca 145671
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 101     cgaccatggcgctctcctc 119
               |||||||||||||||||||
Sbjct: 2802159 cgaccatggcgctctcctc 2802141
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>gb|AY359576.1| Zea mays B73 acc oxidase (ACO35) gene, complete cds
          Length = 4336

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 62   gctagctagctagcacgca 80
            |||||||||||||||||||
Sbjct: 2366 gctagctagctagcacgca 2348
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 62       gctagctagctagcacgca 80
                |||||||||||||||||||
Sbjct: 25029244 gctagctagctagcacgca 25029226



 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 98      cggcgaccatggcgctctcctcc 120
               ||||| |||||||||||||||||
Sbjct: 9462733 cggcggccatggcgctctcctcc 9462711
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>gb|AC020606.7| Homo sapiens BAC clone RP11-563O5 from 7, complete sequence
          Length = 151822

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     ggctagctagctagcacgc 79
              |||||||||||||||||||
Sbjct: 113066 ggctagctagctagcacgc 113048
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>gb|BC048902.1| Mus musculus DnaJ (Hsp40) homolog, subfamily B, member 5, mRNA
           (cDNA clone MGC:56734 IMAGE:6396037), complete cds
          Length = 1592

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  actgtcactgccagcctca 45
           |||||||||||||||||||
Sbjct: 95  actgtcactgccagcctca 113
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>ref|XM_799661.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053505229.20) partial mRNA
          Length = 1686

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 101 cgaccatggcgctctcctc 119
           |||||||||||||||||||
Sbjct: 472 cgaccatggcgctctcctc 454
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>ref|XM_805848.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510823.20) partial mRNA
          Length = 1659

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 101 cgaccatggcgctctcctc 119
           |||||||||||||||||||
Sbjct: 466 cgaccatggcgctctcctc 448
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>gb|AC160109.2| Mus musculus BAC clone RP24-169I22 from chromosome 13, complete sequence
          Length = 151819

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     aaggctagctagctagcac 77
              |||||||||||||||||||
Sbjct: 120110 aaggctagctagctagcac 120128
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 109     gcgctctcctccccggcga 127
               |||||||||||||||||||
Sbjct: 5168404 gcgctctcctccccggcga 5168386
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>gb|AY316293.1| Triticum aestivum SKP1/ASK1-like protein (skp1) mRNA, complete cds
          Length = 822

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 78  gcagcgagcgatggcggccgcgg 100
           |||||| ||||||||||||||||
Sbjct: 52  gcagcgggcgatggcggccgcgg 74
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>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
             sequence
          Length = 170020

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    gctagctagctagcacgca 80
             |||||||||||||||||||
Sbjct: 61051 gctagctagctagcacgca 61033
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>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13
          Length = 346051

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   cgaccatggcgctctcctc 119
             |||||||||||||||||||
Sbjct: 33635 cgaccatggcgctctcctc 33617
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>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14
          Length = 306550

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 101    cgaccatggcgctctcctc 119
              |||||||||||||||||||
Sbjct: 262468 cgaccatggcgctctcctc 262450
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      caccaacgaccaccagcgc 21
              |||||||||||||||||||
Sbjct: 269083 caccaacgaccaccagcgc 269101
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>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11,
             complete sequence
          Length = 113677

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   ggcgctctcctccccggcg 126
             |||||||||||||||||||
Sbjct: 81457 ggcgctctcctccccggcg 81439
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>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 90     ggcggccgcggcgaccatggcgc 112
              ||||||||||||||||| |||||
Sbjct: 121978 ggcggccgcggcgaccacggcgc 122000



 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 90   ggcggccgcggcgaccatggcgc 112
            ||||||||||||||||| |||||
Sbjct: 3880 ggcggccgcggcgaccacggcgc 3858
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>gb|AC091672.11| Papio anubis clone rp41-367l20, complete sequence
          Length = 172406

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 105    catggcgctctcctccccg 123
              |||||||||||||||||||
Sbjct: 157070 catggcgctctcctccccg 157052
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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 98     cggcgaccatggcgctctcctcc 120
              ||||| |||||||||||||||||
Sbjct: 160133 cggcggccatggcgctctcctcc 160111
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>dbj|AK158972.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K530022D17 product:DnaJ (Hsp40) homolog,
           subfamily B, member 5, full insert sequence
          Length = 3302

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  actgtcactgccagcctca 45
           |||||||||||||||||||
Sbjct: 110 actgtcactgccagcctca 128
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 108      ggcgctctcctccccggcg 126
                |||||||||||||||||||
Sbjct: 26701738 ggcgctctcctccccggcg 26701756
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 62      gctagctagctagcacgca 80
               |||||||||||||||||||
Sbjct: 7816170 gctagctagctagcacgca 7816152
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 62       gctagctagctagcacgca 80
                |||||||||||||||||||
Sbjct: 25120561 gctagctagctagcacgca 25120543



 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 98      cggcgaccatggcgctctcctcc 120
               ||||| |||||||||||||||||
Sbjct: 9460854 cggcggccatggcgctctcctcc 9460832
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 63       ctagctagctagcacgcag 81
                |||||||||||||||||||
Sbjct: 31763343 ctagctagctagcacgcag 31763361
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>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1414_E05
          Length = 105222

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    ctagctagctagcacgcag 81
             |||||||||||||||||||
Sbjct: 41381 ctagctagctagcacgcag 41399
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>ref|XM_320938.2| Anopheles gambiae str. PEST ENSANGP00000017682 (ENSANGG00000015193),
            partial mRNA
          Length = 1677

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 101  cgaccatggcgctctcctccccg 123
            ||||||||||| |||||||||||
Sbjct: 1129 cgaccatggcgatctcctccccg 1107
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>gb|AF092536.1|AF092536 Mus musculus heat shock protein hsp40-3 gene, complete cds
          Length = 9693

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   actgtcactgccagcctca 45
            |||||||||||||||||||
Sbjct: 1385 actgtcactgccagcctca 1403
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>dbj|AB042837.1| Acipenser transmontanus mitochondrial DNA, complete genome
          Length = 16692

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   ctcctactgtcactgccag 40
            |||||||||||||||||||
Sbjct: 6086 ctcctactgtcactgccag 6104
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 62      gctagctagctagcacgca 80
               |||||||||||||||||||
Sbjct: 7886257 gctagctagctagcacgca 7886239
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>gb|AC005259.1|AC005259 Mouse BAC CitbCJ7 219m7, genomic sequence, complete sequence
          Length = 124230

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     actgtcactgccagcctca 45
              |||||||||||||||||||
Sbjct: 118136 actgtcactgccagcctca 118118
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>emb|AL683809.7| Mouse DNA sequence from clone RP23-440B21 on chromosome X, complete
             sequence
          Length = 213187

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    gcaaggctagctagctagc 75
             |||||||||||||||||||
Sbjct: 22694 gcaaggctagctagctagc 22712
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>emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chromosome 4, complete
             sequence
          Length = 208030

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    actgtcactgccagcctca 45
             |||||||||||||||||||
Sbjct: 86713 actgtcactgccagcctca 86731
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>dbj|AB001404.1| Hepatitis C virus gene for E2 protein, hypervariable region,
           partial cds, clone H
          Length = 81

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 103 accatggcgctctcctccc 121
           |||||||||||||||||||
Sbjct: 37  accatggcgctctcctccc 55
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>emb|AL731648.6| Mouse DNA sequence from clone RP23-35I10 on chromosome X, complete
            sequence
          Length = 119995

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 54   gaagcaaggctagctagctagca 76
            ||||| |||||||||||||||||
Sbjct: 6944 gaagctaggctagctagctagca 6922


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,190,290
Number of Sequences: 3902068
Number of extensions: 1190290
Number of successful extensions: 93969
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91411
Number of HSP's gapped (non-prelim): 2558
length of query: 148
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 127
effective length of database: 17,151,101,840
effective search space: 2178189933680
effective search space used: 2178189933680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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