ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast22b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EPL1_SCHPO (Q9UU94) Enhancer of polycomb-like protein 1 28 6.6
2ACHA3_CHICK (P09481) Neuronal acetylcholine receptor protein, al... 28 8.6

>EPL1_SCHPO (Q9UU94) Enhancer of polycomb-like protein 1|
          Length = 557

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 5   NHNPFEVTSSRPDYGLVSSDSLMTSSPHSSLENVNLLTS 121
           +HN   + SS P   L S +    S+PHSSL N N   S
Sbjct: 425 SHNQLSIPSSTPSTPL-SDNGPTYSTPHSSLSNFNTCDS 462



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>ACHA3_CHICK (P09481) Neuronal acetylcholine receptor protein, alpha-3 subunit|
           precursor
          Length = 496

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 171 KCCRESELCCSFESARCEVSRLTFSKEL*GELVISESDET 52
           KCC++  +C     + C+  R+ FS +  G L  S S E+
Sbjct: 380 KCCKDGFVCQDMACSCCQYQRMKFS-DFSGNLTRSSSSES 418


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.131    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,814,931
Number of Sequences: 219361
Number of extensions: 219397
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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