ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast21h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 36 4.2
2dbj|AK127242.1| Homo sapiens cDNA FLJ45309 fis, clone BRHIP30047... 36 4.2
3gb|AC105765.3| Homo sapiens chromosome 3 clone RP11-54L6, comple... 36 4.2
4dbj|AB209761.1| Homo sapiens mRNA for special AT-rich sequence b... 36 4.2

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 1       gctccccatcgcaaaccc 18
               ||||||||||||||||||
Sbjct: 3733644 gctccccatcgcaaaccc 3733661



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>dbj|AK127242.1| Homo sapiens cDNA FLJ45309 fis, clone BRHIP3004725, highly  similar
            to DNA-binding protein SATB1
          Length = 5259

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 2    ctccccatcgcaaacccc 19
            ||||||||||||||||||
Sbjct: 1376 ctccccatcgcaaacccc 1393



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>gb|AC105765.3| Homo sapiens chromosome 3 clone RP11-54L6, complete sequence
          Length = 178790

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     ctccccatcgcaaacccc 19
             ||||||||||||||||||
Sbjct: 15700 ctccccatcgcaaacccc 15683



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>dbj|AB209761.1| Homo sapiens mRNA for special AT-rich sequence binding protein 1
           variant protein
          Length = 3817

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 2   ctccccatcgcaaacccc 19
           ||||||||||||||||||
Sbjct: 643 ctccccatcgcaaacccc 660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,288
Number of Sequences: 3902068
Number of extensions: 85288
Number of successful extensions: 21147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21141
Number of HSP's gapped (non-prelim): 6
length of query: 39
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 19
effective length of database: 17,155,003,908
effective search space: 325945074252
effective search space used: 325945074252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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