Clone Information

BLAST Search Result

Clone Name	bast21f08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_472376.1\| Oryza sativa (japonica cultivar-group), predic...	64	4e-07
2	dbj\|AK120702.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	64	4e-07
3	ref\|XM_466029.1\| Oryza sativa (japonica cultivar-group), mRNA	60	6e-06
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	6e-06
5	dbj\|AP004772.3\| Oryza sativa (japonica cultivar-group) genomic D...	60	6e-06
6	emb\|AL607005.3\|OSJN00124 Oryza sativa genomic DNA, chromosome 4,...	56	9e-05
7	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	56	9e-05
8	ref\|XM_472374.1\| Oryza sativa (japonica cultivar-group), predic...	54	3e-04
9	emb\|AL606610.3\|OSJN00045 Oryza sativa genomic DNA, chromosome 4,...	54	3e-04
10	dbj\|AK120583.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	3e-04
11	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	46	0.084
12	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	44	0.33
13	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	44	0.33
14	gb\|AC099404.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.3
15	gb\|AC108763.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.3
16	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	42	1.3
17	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
18	gb\|CP000359.1\| Deinococcus geothermalis DSM 11300, complete genome	40	5.2
19	gb\|DQ478880.1\| Uncultured bacterium pFosLip hypothetical protein...	40	5.2
20	gb\|BC003981.1\| Mus musculus RIKEN cDNA 2610507L03 gene, mRNA (cD...	40	5.2
21	ref\|XM_001000372.1\| PREDICTED: Mus musculus RIKEN cDNA 2610507L0...	40	5.2
22	ref\|XM_001002532.1\| PREDICTED: Mus musculus RIKEN cDNA 2610507L0...	40	5.2
23	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	40	5.2
24	emb\|AL591788.1\|SME591788 Sinorhizobium meliloti 1021 complete ch...	40	5.2
25	emb\|BX842653.1\| Bdellovibrio bacteriovorus complete genome, stra...	40	5.2
26	gb\|AC091122.10\| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen...	40	5.2
27	gb\|AE012042.1\| Xanthomonas axonopodis pv. citri str. 306, secti...	40	5.2
28	gb\|AC087192.14\| Oryza sativa chromosome 10 BAC OSJNBa0005K07 gen...	40	5.2
29	gb\|AC151535.2\| Mus musculus BAC clone RP23-213M8 from chromosome...	40	5.2
30	dbj\|AK029107.1\| Mus musculus 10 days neonate skin cDNA, RIKEN fu...	40	5.2
31	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	40	5.2
32	dbj\|AK012067.1\| Mus musculus 10 days embryo whole body cDNA, RIK...	40	5.2
33	gb\|CP000116.1\| Thiobacillus denitrificans ATCC 25259, complete g...	40	5.2
34	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.2
35	gb\|AY779624.1\| Myxococcus xanthus strain DK1622 rod locus, compl...	40	5.2
36	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	5.2
37	ref\|NM_028120.1\| Mus musculus RIKEN cDNA 2610507L03 gene (261050...	40	5.2
38	gb\|AY596297.1\| Haloarcula marismortui ATCC 43049 chromosome I, c...	40	5.2
39	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.2

>ref|XM_472376.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1044

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 125/156 (80%)
 Strand = Plus / Plus

                                                                       
Query: 232 cagggcgtcgagatggacgcgctcatacggctcgagacggagagaatccggtcggggctc 291
           ||||| |||||||| ||||||||| | || |||||||  ||| | || ||  ||||||||
Sbjct: 451 cagggtgtcgagatcgacgcgctcgtgcgactcgagagcgagcggatgcgtgcggggctc 510

                                                                       
Query: 292 gaggagtcgcgccggcggcacgccatggcggtgttggctaccgtggagcgcgccgcggcg 351
           |||||| | |||||||| ||||    ||||||| || | ||||| |||||||||||||| 
Sbjct: 511 gaggaggctcgccggcgtcacgtacgggcggtggtgtccaccgtcgagcgcgccgcggcc 570

                                               
Query: 352 gagcggctgcatgccgtagaggccgagctggagcgc 387
           | ||| || | |||||  ||||||||||| ||||||
Sbjct: 571 gggcgtctccgtgccgcggaggccgagctcgagcgc 606



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 147 gcagagcagggccgtctgctccggcgcggcgtccaccagcgggaggatggccaatgccgc 206
           |||||||||||| ||  | | |||||| ||||||||||||||||||   | |||||||||
Sbjct: 354 gcagagcagggcggtgggttgcggcgccgcgtccaccagcgggagggctggcaatgccgc 413

                  
Query: 207 cggcctc 213
           |||||||
Sbjct: 414 cggcctc 420

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>dbj|AK120702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170O17, full
           insert sequence
          Length = 1514

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 125/156 (80%)
 Strand = Plus / Plus

                                                                       
Query: 232 cagggcgtcgagatggacgcgctcatacggctcgagacggagagaatccggtcggggctc 291
           ||||| |||||||| ||||||||| | || |||||||  ||| | || ||  ||||||||
Sbjct: 549 cagggtgtcgagatcgacgcgctcgtgcgactcgagagcgagcggatgcgtgcggggctc 608

                                                                       
Query: 292 gaggagtcgcgccggcggcacgccatggcggtgttggctaccgtggagcgcgccgcggcg 351
           |||||| | |||||||| ||||    ||||||| || | ||||| |||||||||||||| 
Sbjct: 609 gaggaggctcgccggcgtcacgtacgggcggtggtgtccaccgtcgagcgcgccgcggcc 668

                                               
Query: 352 gagcggctgcatgccgtagaggccgagctggagcgc 387
           | ||| || | |||||  ||||||||||| ||||||
Sbjct: 669 gggcgtctccgtgccgcggaggccgagctcgagcgc 704



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 147 gcagagcagggccgtctgctccggcgcggcgtccaccagcgggaggatggccaatgccgc 206
           |||||||||||| ||  | | |||||| ||||||||||||||||||   | |||||||||
Sbjct: 452 gcagagcagggcggtgggttgcggcgccgcgtccaccagcgggagggctggcaatgccgc 511

                  
Query: 207 cggcctc 213
           |||||||
Sbjct: 512 cggcctc 518

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>ref|XM_466029.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1206

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 151 agcagggccgtctgctccggcgcggcgtccaccagcgg 188
           ||||||| |||| |||||||||||||||||||||||||
Sbjct: 439 agcagggtcgtcggctccggcgcggcgtccaccagcgg 476



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 334 gtggagcgcgccgcggcggagcggctgcatgccgtagaggccgagctggagcgc 387
           ||||| |||||||| |||  ||||||||| ||||  ||||||||||||||||||
Sbjct: 739 gtggatcgcgccgccgcgcggcggctgcacgccgcggaggccgagctggagcgc 792

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 151      agcagggccgtctgctccggcgcggcgtccaccagcgg 188
                ||||||| |||| |||||||||||||||||||||||||
Sbjct: 19186575 agcagggtcgtcggctccggcgcggcgtccaccagcgg 19186612



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 334      gtggagcgcgccgcggcggagcggctgcatgccgtagaggccgagctggagcgc 387
                ||||| |||||||| |||  ||||||||| ||||  ||||||||||||||||||
Sbjct: 19186875 gtggatcgcgccgccgcgcggcggctgcacgccgcggaggccgagctggagcgc 19186928

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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 151   agcagggccgtctgctccggcgcggcgtccaccagcgg 188
             ||||||| |||| |||||||||||||||||||||||||
Sbjct: 84824 agcagggtcgtcggctccggcgcggcgtccaccagcgg 84861



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 334   gtggagcgcgccgcggcggagcggctgcatgccgtagaggccgagctggagcgc 387
             ||||| |||||||| |||  ||||||||| ||||  ||||||||||||||||||
Sbjct: 85124 gtggatcgcgccgccgcgcggcggctgcacgccgcggaggccgagctggagcgc 85177

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>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14,
             complete sequence
          Length = 158312

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 85/104 (81%)
 Strand = Plus / Plus

                                                                         
Query: 284   cggggctcgaggagtcgcgccggcggcacgccatggcggtgttggctaccgtggagcgcg 343
             |||||||||||||| | |||||||| ||||    ||||||| || | ||||| |||||||
Sbjct: 66467 cggggctcgaggaggctcgccggcgtcacgtacgggcggtggtgtccaccgtcgagcgcg 66526

                                                         
Query: 344   ccgcggcggagcggctgcatgccgtagaggccgagctggagcgc 387
             ||||||| | ||| || | |||||  ||||||||||| ||||||
Sbjct: 66527 ccgcggccgggcgtctccgtgccgcggaggccgagctcgagcgc 66570



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                         
Query: 147   gcagagcagggccgtctgctccggcgcggcgtccaccagcgggaggatggccaatgccgc 206
             |||||||||||| ||  | | |||||| ||||||||||||||||||   | |||||||||
Sbjct: 66224 gcagagcagggcggtgggttgcggcgccgcgtccaccagcgggagggctggcaatgccgc 66283

                    
Query: 207   cggcctc 213
             |||||||
Sbjct: 66284 cggcctc 66290



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 167   ccggcgcggcgtccaccagcgggagga 193
             |||||||||||||||||||||||||||
Sbjct: 12988 ccggcgcggcgtccaccagcgggagga 12962

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 85/104 (81%)
 Strand = Plus / Plus

                                                                            
Query: 284      cggggctcgaggagtcgcgccggcggcacgccatggcggtgttggctaccgtggagcgcg 343
                |||||||||||||| | |||||||| ||||    ||||||| || | ||||| |||||||
Sbjct: 20003804 cggggctcgaggaggctcgccggcgtcacgtacgggcggtggtgtccaccgtcgagcgcg 20003863

                                                            
Query: 344      ccgcggcggagcggctgcatgccgtagaggccgagctggagcgc 387
                ||||||| | ||| || | |||||  ||||||||||| ||||||
Sbjct: 20003864 ccgcggccgggcgtctccgtgccgcggaggccgagctcgagcgc 20003907



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                            
Query: 147      gcagagcagggccgtctgctccggcgcggcgtccaccagcgggaggatggccaatgccgc 206
                |||||||||||| ||  | | |||||| ||||||||||||||||||   | |||||||||
Sbjct: 20003561 gcagagcagggcggtgggttgcggcgccgcgtccaccagcgggagggctggcaatgccgc 20003620

                       
Query: 207      cggcctc 213
                |||||||
Sbjct: 20003621 cggcctc 20003627



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 167      ccggcgcggcgtccaccagcgggagga 193
                |||||||||||||||||||||||||||
Sbjct: 19950325 ccggcgcggcgtccaccagcgggagga 19950299

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>ref|XM_472374.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 951

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 167 ccggcgcggcgtccaccagcgggagga 193
           |||||||||||||||||||||||||||
Sbjct: 308 ccggcgcggcgtccaccagcgggagga 334

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>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08,
              complete sequence
          Length = 106975

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 167    ccggcgcggcgtccaccagcgggagga 193
              |||||||||||||||||||||||||||
Sbjct: 105133 ccggcgcggcgtccaccagcgggagga 105107

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>dbj|AK120583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136F06, full
           insert sequence
          Length = 1909

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 167 ccggcgcggcgtccaccagcgggagga 193
           |||||||||||||||||||||||||||
Sbjct: 600 ccggcgcggcgtccaccagcgggagga 626

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 335     tggagcgcgccgcggcggagcgg 357
               |||||||||||||||||||||||
Sbjct: 4729690 tggagcgcgccgcggcggagcgg 4729712



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      cgacctcgcccgccagcgcc 94
               ||||||||||||||||||||
Sbjct: 3550760 cgacctcgcccgccagcgcc 3550741



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 284    cggggctcgaggagtcgcgccggcggcacgcc 315
              |||||||||||||| ||||| |||| ||||||
Sbjct: 224142 cggggctcgaggaggcgcgcgggcgccacgcc 224173

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 112    gcggcgatgcacggcctcgtgctgcc 137
              ||||||||| ||||||||||||||||
Sbjct: 603162 gcggcgatgaacggcctcgtgctgcc 603187



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     caggaagcggccgcgcgtga 46
              ||||||||||||||||||||
Sbjct: 807825 caggaagcggccgcgcgtga 807806

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 221    tgctctacaaccagggcgtcgagatg 246
              ||||| ||||||||||||||||||||
Sbjct: 140709 tgctcgacaaccagggcgtcgagatg 140684



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 301    cgccggcggcacgccatggcggtg 324
              ||||||| ||||||||||||||||
Sbjct: 613470 cgccggctgcacgccatggcggtg 613447

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>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0019D02, complete sequence
          Length = 154692

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 354    gcggctgcatgccgtagaggccgagctgg 382
              ||||||||| |||| ||||||||||||||
Sbjct: 143157 gcggctgcacgccgcagaggccgagctgg 143185

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>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBb0004A05, complete sequence
          Length = 157913

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 354   gcggctgcatgccgtagaggccgagctgg 382
             ||||||||| |||| ||||||||||||||
Sbjct: 27831 gcggctgcacgccgcagaggccgagctgg 27859

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 340    cgcgccgcggcggagcggctg 360
              |||||||||||||||||||||
Sbjct: 467295 cgcgccgcggcggagcggctg 467315

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 354      gcggctgcatgccgtagaggccgagctgg 382
                ||||||||| |||| ||||||||||||||
Sbjct: 19097871 gcggctgcacgccgcagaggccgagctgg 19097899

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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 78      cctcgcccgccagcgcctcg 97
               ||||||||||||||||||||
Sbjct: 2323105 cctcgcccgccagcgcctcg 2323086

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>gb|DQ478880.1| Uncultured bacterium pFosLip hypothetical protein gene, partial cds;
             and putative membrane protein, NnrU, hypothetical
             proteins, adenylosuccinate synthetase, HflC, HflK,
             GTP-binding protein, GTPase, Hfq,
             delta(2)-isopentenylpyrophosphate adenosine transferase,
             DNA mismatch repair protein mutL,
             N-acetylmuramoyl-L-alanine amidase, and hypothetical
             protein genes, complete cds
          Length = 15364

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    gctcgacgacctcgcccgcc 88
             ||||||||||||||||||||
Sbjct: 13154 gctcgacgacctcgcccgcc 13173

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>gb|BC003981.1| Mus musculus RIKEN cDNA 2610507L03 gene, mRNA (cDNA clone MGC:7462
            IMAGE:3490246), complete cds
          Length = 2837

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  tagaggccgagctggagcgc 387
            ||||||||||||||||||||
Sbjct: 1827 tagaggccgagctggagcgc 1846

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>ref|XM_001000372.1| PREDICTED: Mus musculus RIKEN cDNA 2610507L03 gene (2610507L03Rik),
            mRNA
          Length = 2598

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  tagaggccgagctggagcgc 387
            ||||||||||||||||||||
Sbjct: 1798 tagaggccgagctggagcgc 1817

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>ref|XM_001002532.1| PREDICTED: Mus musculus RIKEN cDNA 2610507L03 gene (2610507L03Rik),
            mRNA
          Length = 2104

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  tagaggccgagctggagcgc 387
            ||||||||||||||||||||
Sbjct: 1304 tagaggccgagctggagcgc 1323

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 69      gctcgacgacctcgcccgcc 88
               ||||||||||||||||||||
Sbjct: 4647304 gctcgacgacctcgcccgcc 4647323

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>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12
          Length = 306250

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    gcggcggcgatgcacggcct 128
              ||||||||||||||||||||
Sbjct: 182147 gcggcggcgatgcacggcct 182128

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>emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 8/11
          Length = 347636

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    gatggccaatgccgccggcc 211
              ||||||||||||||||||||
Sbjct: 271896 gatggccaatgccgccggcc 271877

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>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
             sequence
          Length = 151991

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 45    gatggctggagacgagccggcggg 68
             ||||||||||| ||||||||||||
Sbjct: 16477 gatggctggaggcgagccggcggg 16454

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>gb|AE012042.1| Xanthomonas axonopodis pv. citri str. 306,  section 420 of 469 of the
            complete genome
          Length = 13441

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   gctcgacgacctcgcccgcc 88
            ||||||||||||||||||||
Sbjct: 9874 gctcgacgacctcgcccgcc 9893

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>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete
             sequence
          Length = 113606

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    gatggctggagacgagccggcggg 68
             ||||||||||| ||||||||||||
Sbjct: 14736 gatggctggaggcgagccggcggg 14759

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>gb|AC151535.2| Mus musculus BAC clone RP23-213M8 from chromosome 7, complete sequence
          Length = 216527

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    tagaggccgagctggagcgc 387
              ||||||||||||||||||||
Sbjct: 112962 tagaggccgagctggagcgc 112943

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>dbj|AK029107.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732493E08 product:hypothetical protein,
            full insert sequence
          Length = 2599

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  tagaggccgagctggagcgc 387
            ||||||||||||||||||||
Sbjct: 1803 tagaggccgagctggagcgc 1822

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 71      tcgacgacctcgcccgccagcgcc 94
               |||||||||||| |||||||||||
Sbjct: 4228205 tcgacgacctcggccgccagcgcc 4228182

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>dbj|AK012067.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:2610507L03 product:similar to
            CDNA FLJ14640 FIS, CLONE NT2RP2001460, WEAKLY SIMILAR TO
            TRICHOHYALIN [Homo sapiens], full insert sequence
          Length = 2568

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  tagaggccgagctggagcgc 387
            ||||||||||||||||||||
Sbjct: 1773 tagaggccgagctggagcgc 1792

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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 69      gctcgacgacctcgcccgcc 88
               ||||||||||||||||||||
Sbjct: 1605997 gctcgacgacctcgcccgcc 1606016

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 45       gatggctggagacgagccggcggg 68
                ||||||||||| ||||||||||||
Sbjct: 19062187 gatggctggaggcgagccggcggg 19062210

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>gb|AY779624.1| Myxococcus xanthus strain DK1622 rod locus, complete sequence
          Length = 15900

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gatggacgcgctcatacggc 262
             ||||||||||||||||||||
Sbjct: 12149 gatggacgcgctcatacggc 12130

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 78      cctcgcccgccagcgcctcg 97
               ||||||||||||||||||||
Sbjct: 4573616 cctcgcccgccagcgcctcg 4573597

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>ref|NM_028120.1| Mus musculus RIKEN cDNA 2610507L03 gene (2610507L03Rik), mRNA
          Length = 2568

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  tagaggccgagctggagcgc 387
            ||||||||||||||||||||
Sbjct: 1773 tagaggccgagctggagcgc 1792

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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 56      acgagccggcggggctcgacgacc 79
               |||||||||||| |||||||||||
Sbjct: 2819796 acgagccggcggtgctcgacgacc 2819819

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 45       gatggctggagacgagccggcggg 68
                ||||||||||| ||||||||||||
Sbjct: 19073441 gatggctggaggcgagccggcggg 19073464


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,259,334
Number of Sequences: 3902068
Number of extensions: 2259334
Number of successful extensions: 53745
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51273
Number of HSP's gapped (non-prelim): 2468
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result