>EMAP_STRPU (Q26613) 77 kDa echinoderm microtubule-associated protein|
          Length = 686

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +3

Query: 333 AAPTRRLHRGRPRSAIPGA----AAPRGDSAG 416
           A+P R    GRP SA PG+    A+PRG SAG
Sbjct: 13  ASPRRPNTPGRPSSARPGSGRTRASPRGGSAG 44

>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 276 PEH*ARTGATPRRGLVRREAAPTRRLHRGRPRSAIPGAAAPRGDSAGV 419
           P   A    TP RG + R A  TR +    P   + GA APR  +AG+
Sbjct: 308 PPRGALVRGTPVRGAITRGATVTRGVP---PPPTVRGAPAPRARTAGI 352

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 160 QPSANSLSLSRPISPHISLATRRHLHPLL 246
           QPS N ++  +  SPHISL T+  +  +L
Sbjct: 311 QPSPNGVNQPQSASPHISLETQEQIRQIL 339

>XYLA_STRRO (P22857) Xylose isomerase (EC 5.3.1.5)|
          Length = 393

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 14  RPPILPLGRSRRRAHSGRQWSASTSR 91
           RPP  P  R RRRA + R W++  SR
Sbjct: 314 RPPSAPTRRCRRRASAPRVWTSWPSR 339

>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (Src-associated in
           mitosis 68 kDa protein) (Sam68)
          Length = 433

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 264 PSFKPEH*ARTGATPRRGLVRREAAPTRRLHRGRPRSAIPGAAAPRGDSAGV 419
           P   P   A     P RG + R AA  R +    P  A+ GA APR  +AG+
Sbjct: 294 PPPPPPRGALVRGAPVRGAIARGAAVARGVP---PPPAVRGAPAPRARAAGI 342

>ANTP_DROME (P02833) Homeotic protein antennapedia|
          Length = 378

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 306 PRRGLVRREAAPTRRLHRGRPRSAIPGAAAPRGDSAGVAAPLH 434
           P +G++ +   P + +H+G P    P +  P   S+G+ +PL+
Sbjct: 243 PPQGMMHQGQGPPQ-MHQGHPGQHTPPSQNPNSQSSGMPSPLY 284

>STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.11.1) (Protein|
           RP1) (Protein G11)
          Length = 368

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 20/41 (48%), Positives = 21/41 (51%)
 Frame = +3

Query: 294 TGATPRRGLVRREAAPTRRLHRGRPRSAIPGAAAPRGDSAG 416
           TGA PRR  V   A P R   RGR R A PG     GD+ G
Sbjct: 40  TGAPPRRQRVPGRACPWREPIRGR-RGARPGG----GDAGG 75

>SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-25-interacting|
           protein) (SNIP)
          Length = 1250

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 294 TGATPRRGLV--RREAAPTRRLHRGRPRSAIPGAAAPRGDSAGVAAPL 431
           T    RR +V   RE++PTRRL+   P S +  ++ P G  +G+ + L
Sbjct: 341 TNGDLRREMVYASRESSPTRRLNNLSPASHLASSSPPPGLPSGLPSGL 388

>GPTC3_HUMAN (Q96I76) G patch domain-containing protein 3|
          Length = 525

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 402 LGGPRRQESHCEADRDGGDEWEQ 334
           +G    +ESH + D D G+EWE+
Sbjct: 280 VGKEEEEESHSDEDDDRGEEWER 302

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +3

Query: 291  RTGATPRRGLVRREAAPTRRLHRG---RPRSAIPGAAAPRGDSAGVAAP 428
            RTG  PR  L ++ A   +R  RG    P    PG  APR   A    P
Sbjct: 2344 RTGQAPRARLPQKPARSVQRERRGLVLSPPPPPPGELAPRAHPARTPRP 2392

>SNIP_RAT (Q9QXY2) p130Cas-associated protein (p140Cap) (SNAP-25-interacting|
           protein) (SNIP)
          Length = 1197

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 294 TGATPRRGLV--RREAAPTRRLHRGRPRSAIPGAAAPRGDSAGVAAPL 431
           T    RR +V   RE++PTRRL+   P S +  ++ P G  +G+ + L
Sbjct: 308 TNGDLRREMVYASRESSPTRRLNNLSPASHLASSSPPPGLPSGLPSGL 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,579,351
Number of Sequences: 219361
Number of extensions: 621905
Number of successful extensions: 3246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3242
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)