ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast21d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF268080.1|AF268080 Aeromonas salmonicida glycerophospholipid... 40 1.2
2emb|X70686.1|ASGCAT Aeromonas salmonicida satA gene 40 1.2
3emb|X07279.1|AHGCAT Aeromonas hydrophila gene for phospholipid-c... 40 1.2
4gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.9
5gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 38 4.9
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.9
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.9
8gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 4.9
9dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.9
10dbj|AP006482.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.9
11dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.9

>gb|AF268080.1|AF268080 Aeromonas salmonicida glycerophospholipid-cholesterol
           acyltransferase (gcaT) gene, complete cds
          Length = 1076

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  gcgggttgccggcgatggcg 102
           ||||||||||||||||||||
Sbjct: 878 gcgggttgccggcgatggcg 859



to top

>emb|X70686.1|ASGCAT Aeromonas salmonicida satA gene
          Length = 1176

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  gcgggttgccggcgatggcg 102
           ||||||||||||||||||||
Sbjct: 878 gcgggttgccggcgatggcg 859



to top

>emb|X07279.1|AHGCAT Aeromonas hydrophila gene for phospholipid-cholesterol
            acyltransferase
          Length = 1368

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   gcgggttgccggcgatggcg 102
            ||||||||||||||||||||
Sbjct: 1076 gcgggttgccggcgatggcg 1057



to top

>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24,
             complete sequence
          Length = 150085

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    cacaccggcgcacggcgag 29
             |||||||||||||||||||
Sbjct: 34970 cacaccggcgcacggcgag 34988



to top

>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 12      acaccggcgcacggcgagc 30
               |||||||||||||||||||
Sbjct: 3005189 acaccggcgcacggcgagc 3005171



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 11       cacaccggcgcacggcgag 29
                |||||||||||||||||||
Sbjct: 13148556 cacaccggcgcacggcgag 13148538



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 90      gccggcgatggcgtggtgg 108
               |||||||||||||||||||
Sbjct: 4904972 gccggcgatggcgtggtgg 4904990



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 84      cgggttgccggcgatggcg 102
               |||||||||||||||||||
Sbjct: 3768426 cgggttgccggcgatggcg 3768408



to top

>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0528E04
          Length = 170701

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    gccggcgatggcgtggtgg 108
             |||||||||||||||||||
Sbjct: 92455 gccggcgatggcgtggtgg 92473



to top

>dbj|AP006482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone: B1101E07
          Length = 158084

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    cacaccggcgcacggcgag 29
             |||||||||||||||||||
Sbjct: 24907 cacaccggcgcacggcgag 24889



to top

>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone: B1100F03
          Length = 139217

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     cacaccggcgcacggcgag 29
              |||||||||||||||||||
Sbjct: 129076 cacaccggcgcacggcgag 129058


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 382,549
Number of Sequences: 3902068
Number of extensions: 382549
Number of successful extensions: 21646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21462
Number of HSP's gapped (non-prelim): 184
length of query: 109
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 88
effective length of database: 17,151,101,840
effective search space: 1509296961920
effective search space used: 1509296961920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top