ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast19h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106900.1| Zea mays PCO142538 mRNA sequence Length = 1029 Score = 436 bits (220), Expect = e-119 Identities = 329/364 (90%), Gaps = 1/364 (0%) Strand = Plus / Plus Query: 101 cgggtgtgcgggatgccggagaaggcgcagctccacgtggcgatgctggcgctgcagttc 160 ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 208 cgggtgtgcggcatgccggagaaggcgcagctgcacgttgcgatgctggcgctgcagttc 267 Query: 161 ggctacgcggggttccacgtggtgtcgcggctggcgctcaacatgggcatcagcaagctg 220 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 ggctacgcgggcttccacgtggtgtcgcggctggcgctcaacatgggcatcagcaagctc 327 Query: 221 gtcttccccgtgtaccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttc 280 ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 328 gtcttccccgtctaccgcaacatcatcgcgctctgcctcctcgtgcccttcgcctacttt 387 Query: 281 ctcgagaagaaggaccggccaaggctcaccctcggcttcgccgtccagttcttcttcctc 340 || |||||||| ||| |||| ||| |||||| ||||| ||||||||| ||||| ||| Sbjct: 388 ctagagaagaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctc 447 Query: 341 gcgctctgcggcatcaccgccaaccagggcttctacctcctgggcctcgac-acacgtcg 399 ||||||||||||||||| || ||||| || || |||||||||||||| ||| |||||||| Sbjct: 448 gcgctctgcggcatcacggcgaaccaagggttttacctcctgggcctggacaacacgtcg 507 Query: 400 cccaccttcgcttccgccatccagaactccgtgccggccatcaccttcggcatggccgcc 459 || || ||||| ||||||||||||||||| || |||||||||||||||| ||||||||| Sbjct: 508 ccgacgttcgcgtccgccatccagaactcggtcccggccatcaccttcgccatggccgcg 567 Query: 460 gcgc 463 |||| Sbjct: 568 gcgc 571
>ref|XM_483787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1595 Score = 392 bits (198), Expect = e-106 Identities = 322/362 (88%), Gaps = 1/362 (0%) Strand = Plus / Plus Query: 103 ggtgtgcgggatgccggagaaggcgcagctccacgtggcgatgctggcgctgcagttcgg 162 |||||||||| |||||||| || ||||||||| | |||||||||||||||||||||||| Sbjct: 154 ggtgtgcgggttgccggagcgggtgcagctccatggggcgatgctggcgctgcagttcgg 213 Query: 163 ctacgcggggttccacgtggtgtcgcggctggcgctcaacatgggcatcagcaagctggt 222 ||||||||||||||| |||||||| ||| | || ||||||||||||||||||||||| || Sbjct: 214 ctacgcggggttccatgtggtgtctcggtttgccctcaacatgggcatcagcaagctcgt 273 Query: 223 cttccccgtgtaccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcct 282 ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct: 274 cttccccgtctaccgcaacatcatcgccctcatcctcctcgtccccttcgcctatttcct 333 Query: 283 cgagaagaaggaccggccaaggctcaccctcggcttcgccgtccagttcttcttcctcgc 342 |||||||||||| ||||| ||| || || |||||| || ||||||||| | || || Sbjct: 334 cgagaagaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggc 393 Query: 343 gctctgcggcatcaccgccaaccagggcttctacctcctgggcctcgac-acacgtcgcc 401 ||| ||||||||||||||||||||||||||||||||||| || |||||| |||| || || Sbjct: 394 gctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctcccc 453 Query: 402 caccttcgcttccgccatccagaactccgtgccggccatcaccttcggcatggccgccgc 461 |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct: 454 gaccttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgc 513 Query: 462 gc 463 || Sbjct: 514 gc 515
>ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.39 mRNA Length = 1601 Score = 392 bits (198), Expect = e-106 Identities = 322/362 (88%), Gaps = 1/362 (0%) Strand = Plus / Plus Query: 103 ggtgtgcgggatgccggagaaggcgcagctccacgtggcgatgctggcgctgcagttcgg 162 |||||||||| |||||||| || ||||||||| | |||||||||||||||||||||||| Sbjct: 160 ggtgtgcgggttgccggagcgggtgcagctccatggggcgatgctggcgctgcagttcgg 219 Query: 163 ctacgcggggttccacgtggtgtcgcggctggcgctcaacatgggcatcagcaagctggt 222 ||||||||||||||| |||||||| ||| | || ||||||||||||||||||||||| || Sbjct: 220 ctacgcggggttccatgtggtgtctcggtttgccctcaacatgggcatcagcaagctcgt 279 Query: 223 cttccccgtgtaccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcct 282 ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct: 280 cttccccgtctaccgcaacatcatcgccctcatcctcctcgtccccttcgcctatttcct 339 Query: 283 cgagaagaaggaccggccaaggctcaccctcggcttcgccgtccagttcttcttcctcgc 342 |||||||||||| ||||| ||| || || |||||| || ||||||||| | || || Sbjct: 340 cgagaagaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggc 399 Query: 343 gctctgcggcatcaccgccaaccagggcttctacctcctgggcctcgac-acacgtcgcc 401 ||| ||||||||||||||||||||||||||||||||||| || |||||| |||| || || Sbjct: 400 gctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctcccc 459 Query: 402 caccttcgcttccgccatccagaactccgtgccggccatcaccttcggcatggccgccgc 461 |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct: 460 gaccttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgc 519 Query: 462 gc 463 || Sbjct: 520 gc 521
>dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109M16, full insert sequence Length = 1601 Score = 392 bits (198), Expect = e-106 Identities = 322/362 (88%), Gaps = 1/362 (0%) Strand = Plus / Plus Query: 103 ggtgtgcgggatgccggagaaggcgcagctccacgtggcgatgctggcgctgcagttcgg 162 |||||||||| |||||||| || ||||||||| | |||||||||||||||||||||||| Sbjct: 160 ggtgtgcgggttgccggagcgggtgcagctccatggggcgatgctggcgctgcagttcgg 219 Query: 163 ctacgcggggttccacgtggtgtcgcggctggcgctcaacatgggcatcagcaagctggt 222 ||||||||||||||| |||||||| ||| | || ||||||||||||||||||||||| || Sbjct: 220 ctacgcggggttccatgtggtgtctcggtttgccctcaacatgggcatcagcaagctcgt 279 Query: 223 cttccccgtgtaccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcct 282 ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct: 280 cttccccgtctaccgcaacatcatcgccctcatcctcctcgtccccttcgcctatttcct 339 Query: 283 cgagaagaaggaccggccaaggctcaccctcggcttcgccgtccagttcttcttcctcgc 342 |||||||||||| ||||| ||| || || |||||| || ||||||||| | || || Sbjct: 340 cgagaagaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggc 399 Query: 343 gctctgcggcatcaccgccaaccagggcttctacctcctgggcctcgac-acacgtcgcc 401 ||| ||||||||||||||||||||||||||||||||||| || |||||| |||| || || Sbjct: 400 gctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctcccc 459 Query: 402 caccttcgcttccgccatccagaactccgtgccggccatcaccttcggcatggccgccgc 461 |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct: 460 gaccttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgc 519 Query: 462 gc 463 || Sbjct: 520 gc 521
>dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096J12, full insert sequence Length = 1595 Score = 385 bits (194), Expect = e-104 Identities = 321/362 (88%), Gaps = 1/362 (0%) Strand = Plus / Plus Query: 103 ggtgtgcgggatgccggagaaggcgcagctccacgtggcgatgctggcgctgcagttcgg 162 |||||||||| |||||||| || ||||||||| | |||||||||||||||||||||||| Sbjct: 154 ggtgtgcgggttgccggagcgggtgcagctccatggggcgatgctggcgctgcagttcgg 213 Query: 163 ctacgcggggttccacgtggtgtcgcggctggcgctcaacatgggcatcagcaagctggt 222 ||||||||||||||| |||||||| ||| | || ||||||||||||||| ||||||| || Sbjct: 214 ctacgcggggttccatgtggtgtctcggtttgccctcaacatgggcatcggcaagctcgt 273 Query: 223 cttccccgtgtaccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcct 282 ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct: 274 cttccccgtctaccgcaacatcatcgccctcatcctcctcgtccccttcgcctatttcct 333 Query: 283 cgagaagaaggaccggccaaggctcaccctcggcttcgccgtccagttcttcttcctcgc 342 |||||||||||| ||||| ||| || || |||||| || ||||||||| | || || Sbjct: 334 cgagaagaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggc 393 Query: 343 gctctgcggcatcaccgccaaccagggcttctacctcctgggcctcgac-acacgtcgcc 401 ||| ||||||||||||||||||||||||||||||||||| || |||||| |||| || || Sbjct: 394 gctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctcccc 453 Query: 402 caccttcgcttccgccatccagaactccgtgccggccatcaccttcggcatggccgccgc 461 |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct: 454 gaccttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgc 513 Query: 462 gc 463 || Sbjct: 514 gc 515
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 244 bits (123), Expect = 2e-61 Identities = 171/187 (91%) Strand = Plus / Plus Query: 103 ggtgtgcgggatgccggagaaggcgcagctccacgtggcgatgctggcgctgcagttcgg 162 |||||||||| |||||||| || ||||||||| | |||||||||||||||||||||||| Sbjct: 28111648 ggtgtgcgggttgccggagcgggtgcagctccatggggcgatgctggcgctgcagttcgg 28111707 Query: 163 ctacgcggggttccacgtggtgtcgcggctggcgctcaacatgggcatcagcaagctggt 222 ||||||||||||||| |||||||| ||| | || ||||||||||||||||||||||| || Sbjct: 28111708 ctacgcggggttccatgtggtgtctcggtttgccctcaacatgggcatcagcaagctcgt 28111767 Query: 223 cttccccgtgtaccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcct 282 ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct: 28111768 cttccccgtctaccgcaacatcatcgccctcatcctcctcgtccccttcgcctatttcct 28111827 Query: 283 cgagaag 289 ||||||| Sbjct: 28111828 cgagaag 28111834 Score = 165 bits (83), Expect = 2e-37 Identities = 126/139 (90%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 326 cagttcttcttcctcgcgctctgcggcatcaccgccaaccagggcttctacctcctgggc 385 ||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 28112016 cagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcctcgga 28112075 Query: 386 ctcgaca-cacgtcgcccaccttcgcttccgccatccagaactccgtgccggccatcacc 444 ||||||| ||| || || |||||||| |||||||||||||||||||| |||||||||||| Sbjct: 28112076 ctcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggccatcacc 28112135 Query: 445 ttcggcatggccgccgcgc 463 |||| |||||||||||||| Sbjct: 28112136 ttcgccatggccgccgcgc 28112154
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 244 bits (123), Expect = 2e-61 Identities = 171/187 (91%) Strand = Plus / Plus Query: 103 ggtgtgcgggatgccggagaaggcgcagctccacgtggcgatgctggcgctgcagttcgg 162 |||||||||| |||||||| || ||||||||| | |||||||||||||||||||||||| Sbjct: 109143 ggtgtgcgggttgccggagcgggtgcagctccatggggcgatgctggcgctgcagttcgg 109202 Query: 163 ctacgcggggttccacgtggtgtcgcggctggcgctcaacatgggcatcagcaagctggt 222 ||||||||||||||| |||||||| ||| | || ||||||||||||||||||||||| || Sbjct: 109203 ctacgcggggttccatgtggtgtctcggtttgccctcaacatgggcatcagcaagctcgt 109262 Query: 223 cttccccgtgtaccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcct 282 ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct: 109263 cttccccgtctaccgcaacatcatcgccctcatcctcctcgtccccttcgcctatttcct 109322 Query: 283 cgagaag 289 ||||||| Sbjct: 109323 cgagaag 109329 Score = 165 bits (83), Expect = 2e-37 Identities = 126/139 (90%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 326 cagttcttcttcctcgcgctctgcggcatcaccgccaaccagggcttctacctcctgggc 385 ||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 109511 cagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcctcgga 109570 Query: 386 ctcgaca-cacgtcgcccaccttcgcttccgccatccagaactccgtgccggccatcacc 444 ||||||| ||| || || |||||||| |||||||||||||||||||| |||||||||||| Sbjct: 109571 ctcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggccatcacc 109630 Query: 445 ttcggcatggccgccgcgc 463 |||| |||||||||||||| Sbjct: 109631 ttcgccatggccgccgcgc 109649
>ref|XM_463858.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1161 Score = 234 bits (118), Expect = 2e-58 Identities = 157/170 (92%) Strand = Plus / Plus Query: 125 gcgcagctccacgtggcgatgctggcgctgcagttcggctacgcggggttccacgtggtg 184 |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 52 gcgcggctgcacgtggcgatgctggcgctgcagctcgggtacgccgggttccacgtggtg 111 Query: 185 tcgcggctggcgctcaacatgggcatcagcaagctggtcttccccgtgtaccgcaacatc 244 |||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||| || Sbjct: 112 tcgcggctggcgctggacatgggcgtcagcaagctcgtcttccccgtctaccgcaacctc 171 Query: 245 atcgcgctcttcctcctcgtccccttcgcctacttcctcgagaagaagga 294 ||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 172 atcgccctcttcctcctcgcccccttcgcctacttcctcgagaagaagga 221 Score = 165 bits (83), Expect = 2e-37 Identities = 126/139 (90%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 326 cagttcttcttcctcgcgctctgcggcatcaccgccaaccagggcttctacctcctgggc 385 |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 253 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 312 Query: 386 ctcgaca-cacgtcgcccaccttcgcttccgccatccagaactccgtgccggccatcacc 444 ||||| | ||| ||||| || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 313 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 372 Query: 445 ttcggcatggccgccgcgc 463 |||| |||||||||||||| Sbjct: 373 ttcgccatggccgccgcgc 391
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 224 bits (113), Expect = 2e-55 Identities = 152/165 (92%) Strand = Plus / Minus Query: 125 gcgcagctccacgtggcgatgctggcgctgcagttcggctacgcggggttccacgtggtg 184 |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 764972 gcgcggctgcacgtggcgatgctggcgctgcagctcgggtacgccgggttccacgtggtg 764913 Query: 185 tcgcggctggcgctcaacatgggcatcagcaagctggtcttccccgtgtaccgcaacatc 244 |||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||| || Sbjct: 764912 tcgcggctggcgctggacatgggcgtcagcaagctcgtcttccccgtctaccgcaacctc 764853 Query: 245 atcgcgctcttcctcctcgtccccttcgcctacttcctcgagaag 289 ||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 764852 atcgccctcttcctcctcgcccccttcgcctacttcctcgagaag 764808 Score = 165 bits (83), Expect = 2e-37 Identities = 126/139 (90%), Gaps = 1/139 (0%) Strand = Plus / Minus Query: 326 cagttcttcttcctcgcgctctgcggcatcaccgccaaccagggcttctacctcctgggc 385 |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 764680 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 764621 Query: 386 ctcgaca-cacgtcgcccaccttcgcttccgccatccagaactccgtgccggccatcacc 444 ||||| | ||| ||||| || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 764620 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 764561 Query: 445 ttcggcatggccgccgcgc 463 |||| |||||||||||||| Sbjct: 764560 ttcgccatggccgccgcgc 764542 Score = 60.0 bits (30), Expect = 7e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 144 tgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcggctggcgctcaaca 203 ||||||||||||||| | || |||||||||||| | ||||| || || ||||||| Sbjct: 13506492 tgctggcgctgcagtgctgcctcgcggggttccatattgtgtccagggcagccctcaaca 13506433 Query: 204 tgggcatcagcaagctggtcttccccgtgtaccgcaac 241 |||||||||||||| | |||||| |||| ||||||||| Sbjct: 13506432 tgggcatcagcaagatcgtcttcaccgtctaccgcaac 13506395 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 accgcaacatcatcgcgctcttcc 257 |||||| ||||||||||||||||| Sbjct: 7105204 accgcaccatcatcgcgctcttcc 7105227
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 224 bits (113), Expect = 2e-55 Identities = 152/165 (92%) Strand = Plus / Minus Query: 125 gcgcagctccacgtggcgatgctggcgctgcagttcggctacgcggggttccacgtggtg 184 |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 43103 gcgcggctgcacgtggcgatgctggcgctgcagctcgggtacgccgggttccacgtggtg 43044 Query: 185 tcgcggctggcgctcaacatgggcatcagcaagctggtcttccccgtgtaccgcaacatc 244 |||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||| || Sbjct: 43043 tcgcggctggcgctggacatgggcgtcagcaagctcgtcttccccgtctaccgcaacctc 42984 Query: 245 atcgcgctcttcctcctcgtccccttcgcctacttcctcgagaag 289 ||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 42983 atcgccctcttcctcctcgcccccttcgcctacttcctcgagaag 42939 Score = 165 bits (83), Expect = 2e-37 Identities = 126/139 (90%), Gaps = 1/139 (0%) Strand = Plus / Minus Query: 326 cagttcttcttcctcgcgctctgcggcatcaccgccaaccagggcttctacctcctgggc 385 |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 42811 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 42752 Query: 386 ctcgaca-cacgtcgcccaccttcgcttccgccatccagaactccgtgccggccatcacc 444 ||||| | ||| ||||| || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 42751 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 42692 Query: 445 ttcggcatggccgccgcgc 463 |||| |||||||||||||| Sbjct: 42691 ttcgccatggccgccgcgc 42673
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 224 bits (113), Expect = 2e-55 Identities = 152/165 (92%) Strand = Plus / Minus Query: 125 gcgcagctccacgtggcgatgctggcgctgcagttcggctacgcggggttccacgtggtg 184 |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 121867 gcgcggctgcacgtggcgatgctggcgctgcagctcgggtacgccgggttccacgtggtg 121808 Query: 185 tcgcggctggcgctcaacatgggcatcagcaagctggtcttccccgtgtaccgcaacatc 244 |||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||| || Sbjct: 121807 tcgcggctggcgctggacatgggcgtcagcaagctcgtcttccccgtctaccgcaacctc 121748 Query: 245 atcgcgctcttcctcctcgtccccttcgcctacttcctcgagaag 289 ||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 121747 atcgccctcttcctcctcgcccccttcgcctacttcctcgagaag 121703 Score = 165 bits (83), Expect = 2e-37 Identities = 126/139 (90%), Gaps = 1/139 (0%) Strand = Plus / Minus Query: 326 cagttcttcttcctcgcgctctgcggcatcaccgccaaccagggcttctacctcctgggc 385 |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 121575 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 121516 Query: 386 ctcgaca-cacgtcgcccaccttcgcttccgccatccagaactccgtgccggccatcacc 444 ||||| | ||| ||||| || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 121515 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 121456 Query: 445 ttcggcatggccgccgcgc 463 |||| |||||||||||||| Sbjct: 121455 ttcgccatggccgccgcgc 121437
>dbj|AK106679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B01, full insert sequence Length = 2106 Score = 224 bits (113), Expect = 2e-55 Identities = 152/165 (92%) Strand = Plus / Minus Query: 125 gcgcagctccacgtggcgatgctggcgctgcagttcggctacgcggggttccacgtggtg 184 |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 1038 gcgcggctgcacgtggcgatgctggcgctgcagctcgggtacgccgggttccacgtggtg 979 Query: 185 tcgcggctggcgctcaacatgggcatcagcaagctggtcttccccgtgtaccgcaacatc 244 |||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||| || Sbjct: 978 tcgcggctggcgctggacatgggcgtcagcaagctcgtcttccccgtctaccgcaacctc 919 Query: 245 atcgcgctcttcctcctcgtccccttcgcctacttcctcgagaag 289 ||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 918 atcgccctcttcctcctcgcccccttcgcctacttcctcgagaag 874 Score = 165 bits (83), Expect = 2e-37 Identities = 126/139 (90%), Gaps = 1/139 (0%) Strand = Plus / Minus Query: 326 cagttcttcttcctcgcgctctgcggcatcaccgccaaccagggcttctacctcctgggc 385 |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 746 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 687 Query: 386 ctcgaca-cacgtcgcccaccttcgcttccgccatccagaactccgtgccggccatcacc 444 ||||| | ||| ||||| || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 686 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 627 Query: 445 ttcggcatggccgccgcgc 463 |||| |||||||||||||| Sbjct: 626 ttcgccatggccgccgcgc 608
>ref|NM_106203.3| Arabidopsis thaliana unknown protein AT1G75500 mRNA, complete cds Length = 1729 Score = 63.9 bits (32), Expect = 4e-07 Identities = 127/156 (81%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 140 gcgatgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcg-gctggcgct 198 ||||||||| || |||| ||||| ||||| || |||||||||||||| || ||| || || Sbjct: 136 gcgatgctgacgttgcaattcggttacgccggattccacgtggtgtctcgagct-gctct 194 Query: 199 caacatgggcatcagcaagctggtcttccccgtgtaccgcaacatcatcgcgctcttcct 258 |||||||| |||||||| || |||||||| || || || ||||||||||| | | || Sbjct: 195 taacatgggaatcagcaaactcgtcttccctgtttatcgtaacatcatcgccttgcttct 254 Query: 259 cctcgtccccttcgcctacttcctcgagaagaagga 294 ||| | |||||||| |||||||| || |||||||| Sbjct: 255 tctccttcccttcgcttacttccttgaaaagaagga 290
>gb|BT000668.1| Arabidopsis thaliana clone RAFL07-07-I04 (R10794) putative nodulin (At1g75500) mRNA, complete cds Length = 1632 Score = 63.9 bits (32), Expect = 4e-07 Identities = 127/156 (81%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 140 gcgatgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcg-gctggcgct 198 ||||||||| || |||| ||||| ||||| || |||||||||||||| || ||| || || Sbjct: 136 gcgatgctgacgttgcaattcggttacgccggattccacgtggtgtctcgagct-gctct 194 Query: 199 caacatgggcatcagcaagctggtcttccccgtgtaccgcaacatcatcgcgctcttcct 258 |||||||| |||||||| || |||||||| || || || ||||||||||| | | || Sbjct: 195 taacatgggaatcagcaaactcgtcttccctgtttatcgtaacatcatcgccttgcttct 254 Query: 259 cctcgtccccttcgcctacttcctcgagaagaagga 294 ||| | |||||||| |||||||| || |||||||| Sbjct: 255 tctccttcccttcgcttacttccttgaaaagaagga 290
>gb|AY091450.1| Arabidopsis thaliana putative nodulin protein (At1g75500) mRNA, complete cds Length = 1201 Score = 63.9 bits (32), Expect = 4e-07 Identities = 127/156 (81%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 140 gcgatgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcg-gctggcgct 198 ||||||||| || |||| ||||| ||||| || |||||||||||||| || ||| || || Sbjct: 67 gcgatgctgacgttgcaattcggttacgccggattccacgtggtgtctcgagct-gctct 125 Query: 199 caacatgggcatcagcaagctggtcttccccgtgtaccgcaacatcatcgcgctcttcct 258 |||||||| |||||||| || |||||||| || || || ||||||||||| | | || Sbjct: 126 taacatgggaatcagcaaactcgtcttccctgtttatcgtaacatcatcgccttgcttct 185 Query: 259 cctcgtccccttcgcctacttcctcgagaagaagga 294 ||| | |||||||| |||||||| || |||||||| Sbjct: 186 tctccttcccttcgcttacttccttgaaaagaagga 221
>gb|AY045896.1| Arabidopsis thaliana putative nodulin protein (At1g75500) mRNA, complete cds Length = 1697 Score = 63.9 bits (32), Expect = 4e-07 Identities = 127/156 (81%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 140 gcgatgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcg-gctggcgct 198 ||||||||| || |||| ||||| ||||| || |||||||||||||| || ||| || || Sbjct: 136 gcgatgctgacgttgcaattcggttacgccggattccacgtggtgtctcgagct-gctct 194 Query: 199 caacatgggcatcagcaagctggtcttccccgtgtaccgcaacatcatcgcgctcttcct 258 |||||||| |||||||| || |||||||| || || || ||||||||||| | | || Sbjct: 195 taacatgggaatcagcaaactcgtcttccctgtttatcgtaacatcatcgccttgcttct 254 Query: 259 cctcgtccccttcgcctacttcctcgagaagaagga 294 ||| | |||||||| |||||||| || |||||||| Sbjct: 255 tctccttcccttcgcttacttccttgaaaagaagga 290
>gb|AC023754.3|AC023754 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence Length = 100685 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 140 gcgatgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcg-gctggcgct 198 ||||||||| || |||| ||||| ||||| || |||||||||||||| || ||| || || Sbjct: 21783 gcgatgctgacgttgcaattcggttacgccggattccacgtggtgtctcgagct-gctct 21841 Query: 199 caacatgggcatcagcaagctggtcttccccgtgtaccgcaacatcatcgc 249 |||||||| |||||||| || |||||||| || || || ||||||||||| Sbjct: 21842 taacatgggaatcagcaaactcgtcttccctgtttatcgtaacatcatcgc 21892
>gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence Length = 129547 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 140 gcgatgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcg-gctggcgct 198 ||||||||| || |||| ||||| ||||| || |||||||||||||| || ||| || || Sbjct: 119290 gcgatgctgacgttgcaattcggttacgccggattccacgtggtgtctcgagct-gctct 119348 Query: 199 caacatgggcatcagcaagctggtcttccccgtgtaccgcaacatcatcgc 249 |||||||| |||||||| || |||||||| || || || ||||||||||| Sbjct: 119349 taacatgggaatcagcaaactcgtcttccctgtttatcgtaacatcatcgc 119399
>ref|XM_465336.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1071 Score = 60.0 bits (30), Expect = 7e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 144 tgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcggctggcgctcaaca 203 ||||||||||||||| | || |||||||||||| | ||||| || || ||||||| Sbjct: 41 tgctggcgctgcagtgctgcctcgcggggttccatattgtgtccagggcagccctcaaca 100 Query: 204 tgggcatcagcaagctggtcttccccgtgtaccgcaac 241 |||||||||||||| | |||||| |||| ||||||||| Sbjct: 101 tgggcatcagcaagatcgtcttcaccgtctaccgcaac 138
>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0037J12 Length = 118553 Score = 60.0 bits (30), Expect = 7e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 144 tgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcggctggcgctcaaca 203 ||||||||||||||| | || |||||||||||| | ||||| || || ||||||| Sbjct: 21797 tgctggcgctgcagtgctgcctcgcggggttccatattgtgtccagggcagccctcaaca 21738 Query: 204 tgggcatcagcaagctggtcttccccgtgtaccgcaac 241 |||||||||||||| | |||||| |||| ||||||||| Sbjct: 21737 tgggcatcagcaagatcgtcttcaccgtctaccgcaac 21700
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E03 Length = 126845 Score = 60.0 bits (30), Expect = 7e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 144 tgctggcgctgcagttcggctacgcggggttccacgtggtgtcgcggctggcgctcaaca 203 ||||||||||||||| | || |||||||||||| | ||||| || || ||||||| Sbjct: 92421 tgctggcgctgcagtgctgcctcgcggggttccatattgtgtccagggcagccctcaaca 92362 Query: 204 tgggcatcagcaagctggtcttccccgtgtaccgcaac 241 |||||||||||||| | |||||| |||| ||||||||| Sbjct: 92361 tgggcatcagcaagatcgtcttcaccgtctaccgcaac 92324
>ref|NM_184112.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1353 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgagaagaa 291 |||||||||||||||||||||||||| Sbjct: 282 cccttcgcctacttcctcgagaagaa 307
>dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E02, full insert sequence Length = 1353 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgagaagaa 291 |||||||||||||||||||||||||| Sbjct: 282 cccttcgcctacttcctcgagaagaa 307
>dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C11, full insert sequence Length = 1369 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgagaagaa 291 |||||||||||||||||||||||||| Sbjct: 285 cccttcgcctacttcctcgagaagaa 310
>dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A04, full insert sequence Length = 1488 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgagaagaa 291 |||||||||||||||||||||||||| Sbjct: 279 cccttcgcctacttcctcgagaagaa 304
>dbj|AK061369.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D10, full insert sequence Length = 1039 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgagaagaa 291 |||||||||||||||||||||||||| Sbjct: 287 cccttcgcctacttcctcgagaagaa 312
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgagaag 289 |||||||||||||||||||||||| Sbjct: 1009545 cccttcgcctacttcctcgagaag 1009568 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 233 taccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcctcgaga 287 ||||||||||||||||| | || |||||| |||||||||||||| | |||||| Sbjct: 10909690 taccgcaacatcatcgccgccgtcttcctcgcccccttcgcctactacttcgaga 10909744 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 ctcaacatgggcatcagcaag 217 ||||||||||||||||||||| Sbjct: 1009476 ctcaacatgggcatcagcaag 1009496
>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698G03 Length = 147857 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgagaag 289 |||||||||||||||||||||||| Sbjct: 144990 cccttcgcctacttcctcgagaag 145013 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 ctcaacatgggcatcagcaag 217 ||||||||||||||||||||| Sbjct: 144921 ctcaacatgggcatcagcaag 144941
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgagaag 289 |||||||||||||||||||||||| Sbjct: 47213 cccttcgcctacttcctcgagaag 47236 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 ctcaacatgggcatcagcaag 217 ||||||||||||||||||||| Sbjct: 47144 ctcaacatgggcatcagcaag 47164
>dbj|AK106554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G11, full insert sequence Length = 1567 Score = 48.1 bits (24), Expect = 0.026 Identities = 51/60 (85%) Strand = Plus / Plus Query: 233 taccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcctcgagaagaag 292 ||||||||||||||||| | || |||||| |||||||||||||| | |||||| |||| Sbjct: 314 taccgcaacatcatcgccgccgtcttcctcgcccccttcgcctactacttcgagaggaag 373
>ref|NM_183664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1143 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 233 taccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcctcgaga 287 ||||||||||||||||| | || |||||| |||||||||||||| | |||||| Sbjct: 121 taccgcaacatcatcgccgccgtcttcctcgcccccttcgcctactacttcgaga 175
>gb|AY459337.1| Oryza sativa (japonica cultivar-group) clone CL003615.3 R2R3-MYB gene region Length = 42296 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Minus Query: 233 taccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcctcgaga 287 ||||||||||||||||| | || |||||| |||||||||||||| | |||||| Sbjct: 32658 taccgcaacatcatcgccgccgtcttcctcgcccccttcgcctactacttcgaga 32604
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 233 taccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcctcgaga 287 ||||||||||||||||| | || |||||| |||||||||||||| | |||||| Sbjct: 96706 taccgcaacatcatcgccgccgtcttcctcgcccccttcgcctactacttcgaga 96760
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 233 taccgcaacatcatcgcgctcttcctcctcgtccccttcgcctacttcctcgaga 287 ||||||||||||||||| | || |||||| |||||||||||||| | |||||| Sbjct: 12532 taccgcaacatcatcgccgccgtcttcctcgcccccttcgcctactacttcgaga 12586
>gb|DQ213562.1| Taeniopygia guttata clone 0063P0029H08 corticotropin releasing hormone precursor-like mRNA, complete sequence Length = 1359 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 ctcaccctcggcttcgccgtcc 326 |||||||||||||||||||||| Sbjct: 712 ctcaccctcggcttcgccgtcc 691
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 266 cccttcgcctacttcctcgaga 287 |||||||||||||||||||||| Sbjct: 20314033 cccttcgcctacttcctcgaga 20314012
>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0052O11 Length = 106467 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 266 cccttcgcctacttcctcgaga 287 |||||||||||||||||||||| Sbjct: 56644 cccttcgcctacttcctcgaga 56623
>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0678G09 Length = 139220 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 266 cccttcgcctacttcctcgaga 287 |||||||||||||||||||||| Sbjct: 22933 cccttcgcctacttcctcgaga 22912
>dbj|AK071512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098N15, full insert sequence Length = 1499 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 cccttcgcctacttcctcgaga 287 |||||||||||||||||||||| Sbjct: 222 cccttcgcctacttcctcgaga 243
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 cggcatcaccgccaaccagggc 370 |||||||||||||||||||||| Sbjct: 1410985 cggcatcaccgccaaccagggc 1410964
>ref|XM_513297.1| PREDICTED: Pan troglodytes similar to CUB and Sushi multiple domains 1 (LOC456732), mRNA Length = 11088 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 caaccagggcttctacctcctgggc 385 |||||| |||||||||||||||||| Sbjct: 8076 caaccacggcttctacctcctgggc 8100
>emb|AL355178.7| Human DNA sequence from clone RP5-947L8 on chromosome 1p34.1-36.11 Contains part of the CSMD2 gene for CUB and Sushi multiple domains 2, complete sequence Length = 104834 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 caaccagggcttctacctcctgggc 385 |||||| |||||||||||||||||| Sbjct: 9655 caaccacggcttctacctcctgggc 9631
>gb|AC115285.2| Homo sapiens chromosome 1 clone RP4-580O19, complete sequence Length = 124786 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 caaccagggcttctacctcctgggc 385 |||||| |||||||||||||||||| Sbjct: 87469 caaccacggcttctacctcctgggc 87445
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 gcggcatcaccgccaaccagg 368 ||||||||||||||||||||| Sbjct: 554092 gcggcatcaccgccaaccagg 554112
>dbj|AB212622.1| Homo sapiens mRNA for CSMD2 protein, complete cds Length = 13708 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 caaccagggcttctacctcctgggc 385 |||||| |||||||||||||||||| Sbjct: 8835 caaccacggcttctacctcctgggc 8859
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 gcggcatcaccgccaaccagg 368 ||||||||||||||||||||| Sbjct: 566210 gcggcatcaccgccaaccagg 566230
>emb|AL591782.1|SME591782 Sinorhizobium meliloti 1021 complete chromosome; segment 1/12 Length = 260050 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 gcaacatcatcgcgctcttcctcct 261 |||||||| |||||||||||||||| Sbjct: 239334 gcaacatcgtcgcgctcttcctcct 239358
>emb|AL627093.17| Mouse DNA sequence from clone RP23-450P8 on chromosome 4, complete sequence Length = 169621 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 caaccagggcttctacctcctgggc 385 |||||| |||||||||||||||||| Sbjct: 160906 caaccacggcttctacctcctgggc 160930
>ref|XM_464750.1| Oryza sativa (japonica cultivar-group), mRNA Length = 615 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 accgcaacatcatcgcgctcttcc 257 |||||| ||||||||||||||||| Sbjct: 572 accgcaccatcatcgcgctcttcc 595
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tgctggcgctgcagttcggctacg 167 |||||||||||| ||||||||||| Sbjct: 1940212 tgctggcgctgctgttcggctacg 1940235
>gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, complete sequence Length = 192643 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 251 ctcttcctcctcgtccccttcgcctact 278 |||||||||||| ||||||| ||||||| Sbjct: 134899 ctcttcctcctcctccccttagcctact 134872
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 tcgcgctctgcggcatcacc 358 |||||||||||||||||||| Sbjct: 1247194 tcgcgctctgcggcatcacc 1247175
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 cttcctcctcgtccccttcg 272 |||||||||||||||||||| Sbjct: 846998 cttcctcctcgtccccttcg 847017
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gtcgcggctggcgctcaaca 203 |||||||||||||||||||| Sbjct: 1438904 gtcgcggctggcgctcaaca 1438885
>gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, complete sequence Length = 219617 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 251 ctcttcctcctcgtccccttcgcctact 278 |||||||||||| ||||||| ||||||| Sbjct: 93474 ctcttcctcctcctccccttagcctact 93447
>ref|XM_838318.1| Leishmania major strain Friedlin ubiquitin-activating enzyme E1 (LMJ_1235) partial mRNA Length = 3465 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgcgctctgcggcatcacc 358 |||||||||||||||||||| Sbjct: 1514 tcgcgctctgcggcatcacc 1533
>ref|XM_743382.1| Aspergillus fumigatus Af293 MFS monocarboxylate transporter (Afu3g01540) partial mRNA Length = 1356 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 catcgcgctcttcctcctcg 263 |||||||||||||||||||| Sbjct: 660 catcgcgctcttcctcctcg 679
>ref|XM_568751.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNB00050) partial mRNA Length = 5912 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 tcttcctcctcgtccccttcgcct 275 ||||||||||| |||||||||||| Sbjct: 5729 tcttcctcctcttccccttcgcct 5706
>ref|XM_570516.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND03140) partial mRNA Length = 5339 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 cttcctcctcgtccccttcg 272 |||||||||||||||||||| Sbjct: 4349 cttcctcctcgtccccttcg 4330
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctctagcagcagccatggcg 82 |||||||||||||||||||| Sbjct: 146317 ctctagcagcagccatggcg 146336
>gb|AC161196.4| Mus musculus chromosome 15, clone RP23-319G15, complete sequence Length = 177873 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 251 ctcttcctcctcgtccccttcgcctact 278 |||||||||||| ||||||| ||||||| Sbjct: 25755 ctcttcctcctcctccccttagcctact 25728
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctctagcagcagccatggcg 82 |||||||||||||||||||| Sbjct: 3784 ctctagcagcagccatggcg 3803
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 tcttcctcctcgtccccttcgcct 275 ||||||||||| |||||||||||| Sbjct: 9104 tcttcctcctcttccccttcgcct 9127
>gb|AF408845.1| Triticum aestivum sucrose transporter SUT1D gene, complete cds Length = 6582 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gcagcagccatggcggacgc 87 |||||||||||||||||||| Sbjct: 6492 gcagcagccatggcggacgc 6511
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctctagcagcagccatggcg 82 |||||||||||||||||||| Sbjct: 18642506 ctctagcagcagccatggcg 18642525
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tcaccctcggcttcgccgtc 325 |||||||||||||||||||| Sbjct: 20613348 tcaccctcggcttcgccgtc 20613367
>emb|AL670860.6| Mouse DNA sequence from clone RP23-50K11 on chromosome 2, complete sequence Length = 83914 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tcttcctcctcgtccccttc 271 |||||||||||||||||||| Sbjct: 25408 tcttcctcctcgtccccttc 25427
>gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, complete sequence Length = 185563 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gggcatcagcaagctggtct 224 |||||||||||||||||||| Sbjct: 33634 gggcatcagcaagctggtct 33615
>gb|AC093332.10| Homo sapiens chromosome 18, clone RP11-802O5, complete sequence Length = 112270 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gggcatcagcaagctggtct 224 |||||||||||||||||||| Sbjct: 25990 gggcatcagcaagctggtct 26009
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 gcgatgctggcgctgcagttcggc 163 ||||||||||||| |||||||||| Sbjct: 2056045 gcgatgctggcgcagcagttcggc 2056068
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 accgcaacatcatcgcgctcttcc 257 |||||| ||||||||||||||||| Sbjct: 108623 accgcaccatcatcgcgctcttcc 108646
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gcagcagccatggcggacgc 87 |||||||||||||||||||| Sbjct: 7824636 gcagcagccatggcggacgc 7824655
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tgtcgcggctggcgctcaac 202 |||||||||||||||||||| Sbjct: 4257558 tgtcgcggctggcgctcaac 4257539
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 catcaccttcggcatggccgccgc 461 ||||||| |||||||||||||||| Sbjct: 1381575 catcaccctcggcatggccgccgc 1381552
>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427B07 Length = 172058 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tcaccctcggcttcgccgtc 325 |||||||||||||||||||| Sbjct: 35755 tcaccctcggcttcgccgtc 35774
>dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0620H05 Length = 161808 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 accgcaacatcatcgcgctcttcc 257 |||||| ||||||||||||||||| Sbjct: 5141 accgcaccatcatcgcgctcttcc 5164
>dbj|AK099393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F15, full insert sequence Length = 2128 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctctagcagcagccatggcg 82 |||||||||||||||||||| Sbjct: 2019 ctctagcagcagccatggcg 2000
>dbj|AK062231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D06, full insert sequence Length = 1109 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctctagcagcagccatggcg 82 |||||||||||||||||||| Sbjct: 1000 ctctagcagcagccatggcg 981
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 gcgatgctggcgctgcagttcggc 163 ||||||||||||| |||||||||| Sbjct: 872664 gcgatgctggcgcagcagttcggc 872641
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctctagcagcagccatggcg 82 |||||||||||||||||||| Sbjct: 18653359 ctctagcagcagccatggcg 18653378
>emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chromosome 2, complete sequence Length = 173053 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ctcctcacctcagctttccc 26 |||||||||||||||||||| Sbjct: 87413 ctcctcacctcagctttccc 87394 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,195,198 Number of Sequences: 3902068 Number of extensions: 3195198 Number of successful extensions: 68994 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 67626 Number of HSP's gapped (non-prelim): 1347 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
