ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast19h02 |
|---|---|
| Clone Library Name | barley_pub |
>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa| protein) Length = 201 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -2 Query: 107 RNLNDASPAQRPCDPSSYHESSD 39 ++LN ASP+ P DPSS H++ D Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169
>DICER_HUMAN (Q9UPY3) Endoribonuclease Dicer (EC 3.1.26.-) (Helicase with RNase| motif) (Helicase-MOI) Length = 1912 Score = 28.5 bits (62), Expect = 6.9 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 Query: 342 KKMELELVTHSNYQTLTRPVLLFIVTTSPCQDWVICAP 229 K +LE + SN +T T V+L T+ PC+ V C P Sbjct: 212 KIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGP 249
>ACL1_NEUCR (Q8X097) Probable ATP-citrate synthase subunit 1 (EC 2.3.3.8)| (ATP-citrate (pro-S-)-lyase 1) (Citrate cleavage enzyme subunit 1) Length = 670 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -1 Query: 342 KKMELELVTHSNYQTLTRPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSG 181 K +E+ L+ +++ + I+TT +D + A L GSRF G+L G Sbjct: 444 KFLEMVLMLTADHGPAVSGAMNTIITTRAGKDLISSLVAGLLTIGSRFGGALDG 497
>ACL1_SORMA (O93988) ATP-citrate synthase subunit 1 (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase 1) (Citrate cleavage enzyme subunit 1) Length = 674 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -1 Query: 342 KKMELELVTHSNYQTLTRPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSLSG 181 K +E+ L+ +++ + I+TT +D + A L GSRF G+L G Sbjct: 448 KFLEMVLMLTADHGPAVSGAMNTIITTRAGKDLISSLVAGLLTIGSRFGGALDG 501
>FUMC_STAS1 (Q49YP8) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 461 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 333 PFFSSEKKPHTLMAKDEVMETGG 401 PF SSE K H L A DEV++ G Sbjct: 255 PFVSSENKFHALTAHDEVVQLHG 277
>FUMC_STAAW (Q8NVV1) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 461 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 333 PFFSSEKKPHTLMAKDEVMETGG 401 PF SSE K H L A DEV++ G Sbjct: 255 PFVSSENKFHALTAHDEVVQLHG 277
>FUMC_STAAS (Q6G884) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 461 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 333 PFFSSEKKPHTLMAKDEVMETGG 401 PF SSE K H L A DEV++ G Sbjct: 255 PFVSSENKFHALTAHDEVVQLHG 277
>FUMC_STAAR (Q6GFK5) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 461 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 333 PFFSSEKKPHTLMAKDEVMETGG 401 PF SSE K H L A DEV++ G Sbjct: 255 PFVSSENKFHALTAHDEVVQLHG 277
>FUMC_STAAN (P64173) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 461 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 333 PFFSSEKKPHTLMAKDEVMETGG 401 PF SSE K H L A DEV++ G Sbjct: 255 PFVSSENKFHALTAHDEVVQLHG 277
>FUMC_STAAM (P64172) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 461 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 333 PFFSSEKKPHTLMAKDEVMETGG 401 PF SSE K H L A DEV++ G Sbjct: 255 PFVSSENKFHALTAHDEVVQLHG 277
>FUMC_STAAC (Q5HES4) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 461 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 333 PFFSSEKKPHTLMAKDEVMETGG 401 PF SSE K H L A DEV++ G Sbjct: 255 PFVSSENKFHALTAHDEVVQLHG 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,251,770 Number of Sequences: 219361 Number of extensions: 1238464 Number of successful extensions: 2661 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2660 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
