ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast19b10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 180 bits (91), Expect = 3e-42 Identities = 226/271 (83%) Strand = Plus / Plus Query: 157 tggggcgaggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgag 216 |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 79 tggggcaaggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggag 138 Query: 217 gcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcg 276 ||| || |||||||||||| |||||| || | |||||||| |||||||||||||| || Sbjct: 139 gcggcgacggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacg 198 Query: 277 tgctcgtggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgcc 336 ||||||||| ||||| ||| |||| || | | |||||| || |||| ||||||||| Sbjct: 199 tgctcgtgggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgcc 258 Query: 337 gacacccccggcgactgcaagttcagctacgccagggactgccacgggacgaaaggggag 396 |||||||||||||||||| |||||| ||||||| |||| |||||| || || || ||| Sbjct: 259 gacacccccggcgactgccagttcaactacgcccgggattgccacaacacaaacggtgag 318 Query: 397 aaggacatgtgcgtcgtcggaggcatcaaca 427 ||||||||||| || ||||||| ||||||| Sbjct: 319 aaggacatgtgtgtggtcggagcgatcaaca 349
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full insert sequence Length = 1146 Score = 180 bits (91), Expect = 3e-42 Identities = 226/271 (83%) Strand = Plus / Plus Query: 157 tggggcgaggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgag 216 |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 105 tggggcaaggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggag 164 Query: 217 gcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcg 276 ||| || |||||||||||| |||||| || | |||||||| |||||||||||||| || Sbjct: 165 gcggcgacggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacg 224 Query: 277 tgctcgtggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgcc 336 ||||||||| ||||| ||| |||| || | | |||||| || |||| ||||||||| Sbjct: 225 tgctcgtgggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgcc 284 Query: 337 gacacccccggcgactgcaagttcagctacgccagggactgccacgggacgaaaggggag 396 |||||||||||||||||| |||||| ||||||| |||| |||||| || || || ||| Sbjct: 285 gacacccccggcgactgccagttcaactacgcccgggattgccacaacacaaacggtgag 344 Query: 397 aaggacatgtgcgtcgtcggaggcatcaaca 427 ||||||||||| || ||||||| ||||||| Sbjct: 345 aaggacatgtgtgtggtcggagcgatcaaca 375
>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds Length = 1180 Score = 149 bits (75), Expect = 9e-33 Identities = 120/135 (88%) Strand = Plus / Plus Query: 157 tggggcgaggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgag 216 |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 124 tggggcaaggagggccactacatgacctgcaagatcgccgacggtttcctgacgagcgag 183 Query: 217 gcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcg 276 |||| | ||| |||||||| |||||| ||| ||||||| |||||||||||||| || | Sbjct: 184 gcgttgacgggggtgaaggcgctcctcccgtcgtgggccaacggcgagctcgcggaggtg 243 Query: 277 tgctcgtggccggac 291 ||||||||| ||||| Sbjct: 244 tgctcgtgggcggac 258 Score = 145 bits (73), Expect = 1e-31 Identities = 116/129 (89%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 312 gtggtccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccag 371 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 gtggtcccgctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccag 338 Query: 372 ggactgccacgggacgaaaggggagaaggacatgtgcgtcgtcggaggcatcaac-acta 430 ||||||||||| || || ||| | ||| || ||||||| ||||| | ||||||| |||| Sbjct: 339 ggactgccacgacaccaaggggaacaagaacgtgtgcgtggtcggggccatcaacaacta 398 Query: 431 caccgccgc 439 ||||||||| Sbjct: 399 caccgccgc 407
>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds Length = 1283 Score = 149 bits (75), Expect = 9e-33 Identities = 120/135 (88%) Strand = Plus / Plus Query: 157 tggggcgaggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgag 216 |||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 152 tggggcaaggaggggcactacatgacctgcaagatcgccgatggtttcctgacgagcgag 211 Query: 217 gcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcg 276 || |||||||||||||||| ||||||||| ||||||| |||||||||||||| || | Sbjct: 212 gcatcggcggcggtgaaggacctcctgccgtcgtgggccaacggcgagctcgcggaggtg 271 Query: 277 tgctcgtggccggac 291 ||| ||||| ||||| Sbjct: 272 tgcgcgtgggcggac 286 Score = 123 bits (62), Expect = 5e-25 Identities = 105/118 (88%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 323 ccctgcacttcgccgacacccccggcgactgcaagttcagctacgccagggactgccacg 382 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 318 ccctgcacttcgccgacacccccggtgactgcaacttcagctacgccagggactgccacg 377 Query: 383 ggacgaaaggggagaaggacatgtgcgtcgtcggaggcatcaac-actacaccgccgc 439 || || ||| | |||||| ||||||| || |||| ||||||| ||||||||||||| Sbjct: 378 acaccaaggggaacaaggacgtgtgcgtggtgggagccatcaacaactacaccgccgc 435
>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene) Length = 1139 Score = 123 bits (62), Expect = 5e-25 Identities = 116/134 (86%) Strand = Plus / Plus Query: 157 tggggcgaggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgag 216 |||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||| Sbjct: 131 tggggcaaggaggggcactacatgacctgcaagatcgccgatggtttcctgacgaaggag 190 Query: 217 gcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcg 276 |||||||||| |||||||| ||||| ||| || |||| |||||||||||||| || | Sbjct: 191 gcgtcggcgggggtgaaggatctcctcccgtcgtcggccaacggcgagctcgcggaggtg 250 Query: 277 tgctcgtggccgga 290 ||||||||| |||| Sbjct: 251 tgctcgtgggcgga 264 Score = 77.8 bits (39), Expect = 3e-11 Identities = 100/119 (84%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 325 ctgcacttcgccgacacccccggcgactgcaagttcagctacgccagggactgccacggg 384 ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 299 ctgcacttcgctgacaccccaaaagactgcaagttcagctacgcccgggactgccacgac 358 Query: 385 acgaaaggggagaaggacatgtgcgtcgtcggaggcatcaac-actacaccgccgccct 442 || || ||| | |||||| |||||| ||||| | ||| ||| |||||||||||||||| Sbjct: 359 accaaggggaacaaggacgcgtgcgtggtcggggccattaacaactacaccgccgccct 417
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 113 bits (57), Expect = 5e-22 Identities = 144/173 (83%) Strand = Plus / Plus Query: 197 agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 256 |||||||||||||| |||||| || |||||||||||| |||||| || | |||||||| Sbjct: 60308 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 60367 Query: 257 tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 316 |||||||||||||| ||||||||||| ||||| ||| |||| || | | ||||| Sbjct: 60368 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 60427 Query: 317 ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgcc 369 | || |||| ||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 60428 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgcc 60480 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 157 tggggcgaggagggccactacatgacctgcaagatcgccgagg 199 |||||| ||||||||||||||||| |||||||||||||||| Sbjct: 60183 tggggcaaggagggccactacatggtgtgcaagatcgccgagg 60225
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 113 bits (57), Expect = 5e-22 Identities = 144/173 (83%) Strand = Plus / Plus Query: 197 agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 256 |||||||||||||| |||||| || |||||||||||| |||||| || | |||||||| Sbjct: 33288047 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 33288106 Query: 257 tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 316 |||||||||||||| ||||||||||| ||||| ||| |||| || | | ||||| Sbjct: 33288107 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 33288166 Query: 317 ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgcc 369 | || |||| ||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 33288167 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgcc 33288219 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 157 tggggcgaggagggccactacatgacctgcaagatcgccgagg 199 |||||| ||||||||||||||||| |||||||||||||||| Sbjct: 33287922 tggggcaaggagggccactacatggtgtgcaagatcgccgagg 33287964
>ref|XM_550001.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1290 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 215 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 266 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 215 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 266 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 1565424 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 1565475
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 215 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 266 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 2655 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 2706
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 215 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 266 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 131072 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 131123
>dbj|AK071917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I09, full insert sequence Length = 3171 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Minus Query: 215 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 266 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 134 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 83
>dbj|AK059608.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F03, full insert sequence Length = 1290 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 215 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 266 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228
>gb|AY105439.1| Zea mays PCO064225 mRNA sequence Length = 1193 Score = 48.1 bits (24), Expect = 0.024 Identities = 102/128 (79%) Strand = Plus / Plus Query: 164 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 223 ||||||||||| |||| |||||||||||||||| | |||| ||| ||||| ||| Sbjct: 208 aggagggccacatcatggtctgcaagatcgccgagaagtacctgtcggagaaggcggcgg 267 Query: 224 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 283 |||||||| ||| ||| |||||||||| ||| | ||| ||||| || ||| |||| ||| Sbjct: 268 cggcggtgcaggcgctgctgccggagtcggcgggcggggagctgtcgacggtgtgcccgt 327 Query: 284 ggccggac 291 || ||||| Sbjct: 328 gggcggac 335
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 350 actgcaagttcagctacgccag 371 |||||||||||||||||||||| Sbjct: 112943 actgcaagttcagctacgccag 112922
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 211 ggcgaggcgtcggcggcggtga 232 |||||||||||||||||||||| Sbjct: 23397164 ggcgaggcgtcggcggcggtga 23397185 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 331 ttcgccgacacccccggcgactgca 355 ||||||| ||||||||||||||||| Sbjct: 5924436 ttcgccgtcacccccggcgactgca 5924460
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 166 gagggccactacatgacctgcaagat 191 |||||||||||||| ||||||||||| Sbjct: 28863210 gagggccactacattacctgcaagat 28863235 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 cgtcggcggcggtgaaggggc 238 ||||||||||||||||||||| Sbjct: 7803216 cgtcggcggcggtgaaggggc 7803236
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 350 actgcaagttcagctacgccag 371 |||||||||||||||||||||| Sbjct: 29334286 actgcaagttcagctacgccag 29334265 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ggcgaggcgtcggcggcggtgaag 234 ||||||||| |||||||||||||| Sbjct: 21778643 ggcgaggcggcggcggcggtgaag 21778620 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ggcgagctcgcggcggcgtg 278 |||||||||||||||||||| Sbjct: 4357349 ggcgagctcgcggcggcgtg 4357368
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1199_H01 Length = 107252 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 211 ggcgaggcgtcggcggcggtga 232 |||||||||||||||||||||| Sbjct: 78388 ggcgaggcgtcggcggcggtga 78409
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 87 ccggctgcttcaggccgtcctc 108 |||||||||||||||||||||| Sbjct: 5488685 ccggctgcttcaggccgtcctc 5488664
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 166 gagggccactacatgacctgcaagat 191 |||||||||||||| ||||||||||| Sbjct: 13254 gagggccactacattacctgcaagat 13279
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 211 ggcgaggcgtcggcggcggtga 232 |||||||||||||||||||||| Sbjct: 17061 ggcgaggcgtcggcggcggtga 17082
>ref|XM_477103.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2292 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 331 ttcgccgacacccccggcgactgca 355 ||||||| ||||||||||||||||| Sbjct: 1046 ttcgccgtcacccccggcgactgca 1022
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tcggcggcggtgaaggggctc 240 ||||||||||||||||||||| Sbjct: 3385402 tcggcggcggtgaaggggctc 3385382
>ref|XM_284542.6| PREDICTED: Mus musculus hypothetical protein LOC620538 (LOC620538), mRNA Length = 5131 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 257 tcggcgagctcgcggcggcgtgctc 281 |||||||||||||||||||| |||| Sbjct: 100 tcggcgagctcgcggcggcgcgctc 76
>dbj|AK079552.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230061D21 product:hypothetical TPR repeat/Ankyrin-repeat/Ankyrin repeat region circular profile/Yeast DNA-binding domain containing protein, full insert sequence Length = 2845 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 257 tcggcgagctcgcggcggcgtgctc 281 |||||||||||||||||||| |||| Sbjct: 101 tcggcgagctcgcggcggcgcgctc 77
>gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosome 9, complete sequence Length = 152468 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 257 tcggcgagctcgcggcggcgtgctc 281 |||||||||||||||||||| |||| Sbjct: 37471 tcggcgagctcgcggcggcgcgctc 37495
>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0431E05 Length = 146091 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 cgtcggcggcggtgaaggggc 238 ||||||||||||||||||||| Sbjct: 17598 cgtcggcggcggtgaaggggc 17618
>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06 Length = 161851 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 cgtcggcggcggtgaaggggc 238 ||||||||||||||||||||| Sbjct: 115714 cgtcggcggcggtgaaggggc 115734
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 331 ttcgccgacacccccggcgactgca 355 ||||||| ||||||||||||||||| Sbjct: 66884 ttcgccgtcacccccggcgactgca 66908
>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full insert sequence Length = 2827 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 331 ttcgccgacacccccggcgactgca 355 ||||||| ||||||||||||||||| Sbjct: 1276 ttcgccgtcacccccggcgactgca 1252
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cggcggcggtgaaggggctc 240 |||||||||||||||||||| Sbjct: 24228 cggcggcggtgaaggggctc 24247 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cggcggcggtgaaggggctc 240 |||||||||||||||||||| Sbjct: 23412 cggcggcggtgaaggggctc 23431
>gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0672D07, complete sequence Length = 136465 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ggcgagctcgcggcggcgtg 278 |||||||||||||||||||| Sbjct: 111956 ggcgagctcgcggcggcgtg 111975
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21, complete sequence Length = 135750 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ggcgaggcgtcggcggcggtgaag 234 ||||||||| |||||||||||||| Sbjct: 31052 ggcgaggcggcggcggcggtgaag 31029
>gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, complete sequence Length = 179087 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 aggacagagagagggccaag 63 |||||||||||||||||||| Sbjct: 25862 aggacagagagagggccaag 25881
>ref|XM_362563.1| Magnaporthe grisea 70-15 hypothetical protein (MG08146.4) partial mRNA Length = 1659 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gacctgcaagatcgccgagg 199 |||||||||||||||||||| Sbjct: 1632 gacctgcaagatcgccgagg 1651
>gb|AC164441.4| Mus musculus BAC clone CH25-660D15 from chromosome 13, complete sequence Length = 110316 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 cagcaaggacagagagaggg 58 |||||||||||||||||||| Sbjct: 61011 cagcaaggacagagagaggg 60992
>gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome 13, complete sequence Length = 214085 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 cagcaaggacagagagaggg 58 |||||||||||||||||||| Sbjct: 11296 cagcaaggacagagagaggg 11277
>emb|CR956405.10| Pig DNA sequence from clone CH242-240K6 on chromosome 17, complete sequence Length = 135681 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gctgcttcaggccgtcctcc 109 |||||||||||||||||||| Sbjct: 28464 gctgcttcaggccgtcctcc 28445
>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence Length = 177109 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aggacagagagagggccaag 63 |||||||||||||||||||| Sbjct: 19359 aggacagagagagggccaag 19340
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 acgccgtgcggcgccagatg 309 |||||||||||||||||||| Sbjct: 3428086 acgccgtgcggcgccagatg 3428067
>emb|BX640595.13| Zebrafish DNA sequence from clone CH211-117K11 in linkage group 2, complete sequence Length = 121429 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 atggggttcctccggctgcttcag 99 ||||| |||||||||||||||||| Sbjct: 86090 atgggtttcctccggctgcttcag 86067
>gb|AC121254.2| Homo sapiens chromosome 3 clone RP11-284A4, complete sequence Length = 25487 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cagcaaggacagagagaggg 58 |||||||||||||||||||| Sbjct: 7599 cagcaaggacagagagaggg 7618
>gb|AC015641.9| Homo sapiens chromosome 8, clone RP11-45O16, complete sequence Length = 154580 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cagcaaggacagagagaggg 58 |||||||||||||||||||| Sbjct: 17548 cagcaaggacagagagaggg 17567
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ggccgtcggcgagctcgcgg 271 |||||||||||||||||||| Sbjct: 2769018 ggccgtcggcgagctcgcgg 2769037
>gb|AC158338.1| Homo sapiens chromosome 3 clone WI2-3321H1, complete sequence Length = 43051 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cagcaaggacagagagaggg 58 |||||||||||||||||||| Sbjct: 3656 cagcaaggacagagagaggg 3675
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 agatcgccgagggtttcctg 207 |||||||||||||||||||| Sbjct: 17310943 agatcgccgagggtttcctg 17310924
>gb|AC135352.6| Homo sapiens chromosome 8, clone RP11-369K16, complete sequence Length = 133950 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cagcaaggacagagagaggg 58 |||||||||||||||||||| Sbjct: 128591 cagcaaggacagagagaggg 128610
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggcgtcggcggcggtgaagg 235 |||||||||||||||||||| Sbjct: 1406836 ggcgtcggcggcggtgaagg 1406817
>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08 Length = 164452 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 agatcgccgagggtttcctg 207 |||||||||||||||||||| Sbjct: 83626 agatcgccgagggtttcctg 83607
>dbj|AK106805.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C03, full insert sequence Length = 935 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggcgagctcgcggcggcgtg 278 |||||||||||||||||||| Sbjct: 316 ggcgagctcgcggcggcgtg 297
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tcggcgagctcgcggcggcg 276 |||||||||||||||||||| Sbjct: 54079 tcggcgagctcgcggcggcg 54060
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 323 ccctgcacttcgccgacacccccggcga 350 |||||| |||||||| |||||||||||| Sbjct: 488293 ccctgcgcttcgccgtcacccccggcga 488266
>emb|AL137918.4|CNS01DWQ Human chromosome 14 DNA sequence BAC R-442G21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162016 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ttcagcaaggacagagagag 56 |||||||||||||||||||| Sbjct: 67283 ttcagcaaggacagagagag 67264 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,730,218 Number of Sequences: 3902068 Number of extensions: 2730218 Number of successful extensions: 55677 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54436 Number of HSP's gapped (non-prelim): 1237 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
