ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast18f05 |
|---|---|
| Clone Library Name | barley_pub |
>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1| Length = 602 Score = 37.4 bits (85), Expect = 0.009 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +1 Query: 244 ITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAEC 378 I +IG G+L+L + GW G ++ +FAL + T+ LL+ C Sbjct: 218 INVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRC 262
>YSPK_CAEEL (Q19425) Hypothetical protein F13H10.3 in chromosome IV| Length = 615 Score = 35.0 bits (79), Expect = 0.043 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = +1 Query: 241 IITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAE 375 I ++G+ +L++ WA+ Q G G IML A + +YT+ ++ E Sbjct: 172 IWNTMMGTSLLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIE 216
>S36A1_HUMAN (Q7Z2H8) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 476 Score = 34.7 bits (78), Expect = 0.057 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Frame = +1 Query: 142 EVSVEAGNGRESDWLDDDGRPRRSG----TVWTASA-HIITAVIGSGVLSLAWAIAQLGW 306 +VS E + L G +R G T W + H++ IG+G+L L A+ G Sbjct: 18 DVSPEESPSEGLNNLSSPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGI 77 Query: 307 AAGPAIMLLFALVIYYTSTLLAEC 378 GP +L+ +V + +L +C Sbjct: 78 VMGPISLLIIGIVAVHCMGILVKC 101
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +1 Query: 238 HIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAEC 378 H++ IG+G+L L A+ G GP +L+ +V + +L +C Sbjct: 54 HLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKC 100
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +1 Query: 238 HIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAEC 378 H++ IG+G+L L A+ G GP +L+ +V + +L +C Sbjct: 54 HLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKC 100
>LAX4_ORYSA (Q53JG7) Putative auxin transporter-like protein 4| Length = 480 Score = 31.2 bits (69), Expect = 0.63 Identities = 22/89 (24%), Positives = 41/89 (46%) Frame = +1 Query: 115 KGAARMAPMEVSVEAGNGRESDWLDDDGRPRRSGTVWTASAHIITAVIGSGVLSLAWAIA 294 +GAA A +GR L G+V+ A + + +L+L ++ + Sbjct: 20 EGAATAGEGVGGAAAASGRRRGKLAVSSLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFS 79 Query: 295 QLGWAAGPAIMLLFALVIYYTSTLLAECY 381 QLG A+G A + + L+ +T+ L++ Y Sbjct: 80 QLGMASGVAFQVFYGLMGSWTAYLISVLY 108
>LAX4_MEDTR (Q8L884) Auxin transporter-like protein 4 (AUX1-like protein 4)| (MtLAX4) Length = 482 Score = 30.8 bits (68), Expect = 0.82 Identities = 14/56 (25%), Positives = 30/56 (53%) Frame = +1 Query: 214 GTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECY 381 G+VW A + + +L+L ++ +QLG +G + + L+ +T+ L++ Y Sbjct: 46 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMVSGIVFQIFYGLIGSWTAYLISVLY 101
>UNC47_CAEEL (P34579) Vesicular GABA transporter (Uncoordinated protein 47)| (Protein unc-47) Length = 486 Score = 30.8 bits (68), Expect = 0.82 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%) Frame = +1 Query: 127 RMAPMEVSVEAGNGRESDW-----LDDDGRPRRSGTVWTASA--HIITAVIGSGVLSLAW 285 R+ P++ SV + ++ D DDG S + A ++ A+ G ++ L Sbjct: 53 RLEPIQESVVSEQPQKDDINKQEEAKDDGHGEASEPISALQAAWNVTNAIQGMFIVGLPI 112 Query: 286 AIAQLGWAAGPAIMLLFALVIYYTSTLLAEC-YRSG 390 A+ GW + A M+ A V Y+T LL EC Y +G Sbjct: 113 AVKVGGWWSIGA-MVGVAYVCYWTGVLLIECLYENG 147
>AAPQ_RHILV (Q52813) General L-amino acid transport system permease protein| aapQ Length = 400 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Frame = +1 Query: 217 TVWTASAHII-----TAVIGSGVLSLAWAIAQL-----GWAAGPAIMLLFALVIYYTSTL 366 TVWTA A I+ V+ L+ +A G GP M LF + +YT++ Sbjct: 224 TVWTAIALIVGLPLLVFVVSGFPLTFDVPVAGKFNLTGGSVVGPEFMSLFLALSFYTASF 283 Query: 367 LAECYRSG 390 +AE R G Sbjct: 284 IAEIVRGG 291
>MUTL_XANCP (Q8P8E4) DNA mismatch repair protein mutL| Length = 624 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/39 (48%), Positives = 23/39 (58%) Frame = +1 Query: 184 LDDDGRPRRSGTVWTASAHIITAVIGSGVLSLAWAIAQL 300 L DDG+P SGT A+AH SGV L +A+AQL Sbjct: 409 LRDDGQPVLSGTGLPATAH------DSGVPPLGYAVAQL 441
>AUX1_ARATH (Q96247) Auxin transporter protein 1 (Auxin influx carrier protein| 1) (Polar auxin transport inhibitor resistant protein 1) Length = 485 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/56 (25%), Positives = 31/56 (55%) Frame = +1 Query: 214 GTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECY 381 G+VW A + + +L+L ++ +QLG +G + + + L+ +T+ L++ Y Sbjct: 46 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIVLQIFYGLLGSWTAYLISVLY 101
>PCBB_PROMM (Q7V6U4) Divinyl chlorophyll a/b light-harvesting protein pcbB| Length = 350 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Frame = +1 Query: 211 SGTVW---TASAHIITAVIGSGVLS----LAWAIAQLGWAAGPAIMLLFALVIYYTSTLL 369 SG +W T A T G G+LS L+WA+A +GW A A + Y T Sbjct: 215 SGGLWHIVTKQAGEYTTFKGKGILSAEAQLSWALAGVGWMALVAAFWCASNTTIYPDTFF 274 Query: 370 AE 375 E Sbjct: 275 GE 276
>TERC_ALCSP (P18780) Tellurium resistance protein terC| Length = 346 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +1 Query: 181 WLDDDGRPRRSGTVWTASAHI----ITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVI 348 W R R G W I I IG+G+LSL GP + L+FA+V+ Sbjct: 96 WFSVPDRYRHRGLYWGIIGAIVFRGIFVAIGTGLLSL-----------GPYVELIFAVVV 144 Query: 349 YYTSTLL 369 +T+ ++ Sbjct: 145 AWTAVMM 151
>LAX2_ORYSA (Q688J2) Auxin transporter-like protein 2| Length = 482 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/56 (25%), Positives = 31/56 (55%) Frame = +1 Query: 214 GTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECY 381 G+VW A + + +L+L ++ +QLG +G + + + L+ +T+ L++ Y Sbjct: 45 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGLLLQVFYGLMGSWTAYLISVLY 100
>LAX1_ORYSA (Q5N892) Auxin transporter-like protein 1| Length = 492 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/56 (25%), Positives = 30/56 (53%) Frame = +1 Query: 214 GTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECY 381 G+VW A + + +L+L ++ +QLG +G + L + + +T+ L++ Y Sbjct: 54 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLY 109
>NU4M_ARTSF (Q37711) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 386 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +1 Query: 220 VWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECYRSG 390 +W AH+ V GS V LA + +LG G + L+ L IY +TL+ C G Sbjct: 152 IWLPKAHVEAPVTGSMV--LAAILLKLG---GYGLYLVQVLNIYSETTLMGVCLMGG 203
>MURB_ANASP (Q8YM74) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 331 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 244 ITAVIGSGVLSLAWAIAQLGW 306 +T G + SLAW IA+LGW Sbjct: 123 VTIAAGESIPSLAWEIAKLGW 143
>LAX2_MEDTR (Q9FEL7) Auxin transporter-like protein 2 (AUX1-like protein 2)| (MtLAX2) Length = 484 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/56 (23%), Positives = 31/56 (55%) Frame = +1 Query: 214 GTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECY 381 G+VW A + + +L+L ++ +QLG +G + + + ++ +T+ L++ Y Sbjct: 46 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILLQVFYGILGSWTAYLISVLY 101
>RUVC_DESDG (Q30YX5) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 166 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/48 (35%), Positives = 20/48 (41%) Frame = +1 Query: 55 AKHTPVAIVFPMEKKQASYGKGAARMAPMEVSVEAGNGRESDWLDDDG 198 A H PVA P E K+ G G A + V G + DW D G Sbjct: 98 AHHLPVASYAPTEIKKTIVGVGRAEKEQVSFMVARLLGVKGDWGPDTG 145
>LAX1_ARATH (Q9LFB2) Auxin transporter-like protein 1 (AUX1-like protein 1)| Length = 488 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/56 (23%), Positives = 30/56 (53%) Frame = +1 Query: 214 GTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECY 381 G+ W A + + +L+L ++ +QLG +G + + + L+ +T+ L++ Y Sbjct: 51 GSAWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGLMGSWTAYLISVLY 106
>RS5_LACJO (Q74L73) 30S ribosomal protein S5| Length = 174 Score = 28.5 bits (62), Expect = 4.1 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Frame = +1 Query: 94 KKQASYGKGAARMAPMEV--SVEAGNGRESDWLDDDGRPRRSGTVWTASAHIITAVIGSG 267 K +G G A+ P + +VEAG R + TV T H + GSG Sbjct: 52 KGHVGFGTGKAQEVPEAIRKAVEAGKKRMI----------KVPTVGTTIPHEVMGHYGSG 101 Query: 268 VLSLAWAIAQLGWAAGPAIMLLFAL 342 + L A A G AAG A+ ++ L Sbjct: 102 NIMLKPAEAGSGVAAGGAVRIIMDL 126
>NRAM_IAUSS (P03469) Neuraminidase (EC 3.2.1.18)| Length = 470 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +1 Query: 196 GRPRRSGTVWTASAHIITAVIGSGVLSLAW 285 GRPR T+WT+ + I + S ++ +W Sbjct: 429 GRPREKTTIWTSGSSISFCGVNSDTVNWSW 458
>NRAM_IALEN (P31349) Neuraminidase (EC 3.2.1.18)| Length = 470 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +1 Query: 196 GRPRRSGTVWTASAHIITAVIGSGVLSLAW 285 GRPR T+WT+ + I + S ++ +W Sbjct: 429 GRPREKTTIWTSGSSISFCGVNSDTVNWSW 458
>NRAM_IAKIE (P31348) Neuraminidase (EC 3.2.1.18)| Length = 470 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +1 Query: 196 GRPRRSGTVWTASAHIITAVIGSGVLSLAW 285 GRPR T+WT+ + I + S ++ +W Sbjct: 429 GRPREKTTIWTSGSSISFCGVNSDTVNWSW 458
>UL51_PRVKA (Q85227) Protein UL51| Length = 236 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = +1 Query: 52 PAKHTPVAIVFPMEKKQASYGKGAARMAPMEVSVEAGNGRESDWLDDDGRP 204 P + P + P+ + A AAR AP EAG E D +DD P Sbjct: 162 PVRAAPAGLGLPVPAQPAPRAT-AARPAPPPPPEEAGEDEEGDRPEDDAAP 211
>AVT3_YEAST (P36062) Vacuolar amino acid transporter 3| Length = 692 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 202 PRRSGTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIY 351 P +S TV A ++ + +G+GVL L A GW +L AL+ Y Sbjct: 294 PHKSSTV-KAVLLLLKSFVGTGVLFLPKAFHNGGWGFSALCLLSCALISY 342
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/52 (28%), Positives = 21/52 (40%) Frame = +1 Query: 160 GNGRESDWLDDDGRPRRSGTVWTASAHIITAVIGSGVLSLAWAIAQLGWAAG 315 G G W + +G+PR G+ TA A G G + +G AG Sbjct: 205 GAGSRLSWPESEGKPRVKGSKSTAGTGASAAAAGGGGSAAVTTSGGVGAGAG 256
>YFMO_BACSU (O06473) Multidrug efflux protein yfmO| Length = 396 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +1 Query: 208 RSGTVWTASAHIITAVIGSGVLSLAWAIAQL-----GWAAGPAIMLLFALVI 348 R G WT +I ++ +G+ + +IAQL GW G A+ + AL + Sbjct: 79 RIGAKWTLILGLIFIIVFAGLGGSSSSIAQLVGYRGGWGLGNALFISTALAV 130
>PYRD_AZOSE (Q5P1A9) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 350 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/53 (32%), Positives = 31/53 (58%) Frame = +1 Query: 229 ASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECYRS 387 A A + + G+L A A+L AAG +++ +++ +IY +L+AEC R+ Sbjct: 282 ALAGELPIIAAGGILDGRGARAKL--AAGASLVQVYSGLIYRGPSLIAECVRA 332
>DLDH2_BACSU (P54533) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| branched-chain alpha-keto acid dehydrogenase complex) (LPD-Val) (Dihydrolipoamide dehydrogenase) Length = 474 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 21/72 (29%) Frame = +1 Query: 136 PMEVSVEAGNGRESDWL-------DDDGRPRRSGTVWTASAHIITA-------------- 252 P +SVE GNG E+D L RPR + ++T+ Sbjct: 126 PGTISVERGNGEENDMLIPKQVIIATGSRPRMLPGLEVDGKSVLTSDEALQMEELPQSII 185 Query: 253 VIGSGVLSLAWA 288 ++G GV+ + WA Sbjct: 186 IVGGGVIGIEWA 197
>GPR37_MOUSE (Q9QY42) Probable G-protein coupled receptor 37 precursor| Length = 600 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +1 Query: 163 NGRESDWLDDDGRPRRSGT 219 NG DW+ D G PRR T Sbjct: 210 NGSADDWVPDQGGPRRGNT 228
>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein| 89) Length = 8081 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +1 Query: 133 APMEVSVEAGNGRESDWLDDDGRPRRSGTVWTASAHIITAVIGSGVLSLAWAIAQL 300 A + V+V+ +WL D G+P V T S+H+I V GSG S+ A+L Sbjct: 3303 ATLSVTVKGVPDPSVEWLKD-GQP-----VQTDSSHVIAKVEGSGSYSITIKDARL 3352
>ALG8_AZOVI (P94199) Glycosyl transferase alg8 (EC 2.4.1.-)| Length = 492 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 217 TVWTASAHIITAVIGSGVLSLAWAIAQLGWAAGPAIMLLFAL 342 ++WT+ + A+IGS S+A IA L W ++L L Sbjct: 371 SMWTSLLGLTVAIIGSIKYSIAIFIAYLLWVCSTRLVLTLLL 412
>NRAM_IACHI (P11485) Neuraminidase (EC 3.2.1.18)| Length = 470 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = +1 Query: 196 GRPRRSGTVWTASAHIITAVIGSGVLSLAW 285 GRPR T+WT+ + I + S + +W Sbjct: 429 GRPREKTTIWTSGSSISFCGVNSDTANWSW 458
>TYRP_SHIFL (P0AAD5) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/43 (30%), Positives = 27/43 (62%) Frame = +1 Query: 256 IGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECYR 384 IG+G+L++ A A +G++ +++ ++ YT+ LL E Y+ Sbjct: 17 IGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQ 59
>TYRP_ECOLI (P0AAD4) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/43 (30%), Positives = 27/43 (62%) Frame = +1 Query: 256 IGSGVLSLAWAIAQLGWAAGPAIMLLFALVIYYTSTLLAECYR 384 IG+G+L++ A A +G++ +++ ++ YT+ LL E Y+ Sbjct: 17 IGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQ 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,579,994 Number of Sequences: 219361 Number of extensions: 643832 Number of successful extensions: 2504 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2456 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2503 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
