ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast18e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 90 6e-15
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 90 6e-15
4gb|AY105890.1| Zea mays PCO111077 mRNA sequence 50 0.005
5gb|AY623114.1| Homo sapiens polymerase (DNA directed) sigma (POL... 44 0.31
6gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, com... 44 0.31
7gb|AC128666.4| Mus musculus BAC clone RP24-153M4 from chromosome... 44 0.31
8gb|AC122710.3| Homo sapiens chromosome 5 clone RP11-332J15, comp... 44 0.31
9ref|XM_462798.2| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
10gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, com... 42 1.2
11emb|AJ429077.1|HMA429077 Haloarcula marismortui ORF11, ORF10, OR... 42 1.2
12gb|DQ388768.1| Sus scrofa calcium-activated neutral protease 1 (... 42 1.2
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
15dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
17dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
18gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.2
19dbj|AK063678.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
20dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
21dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.2
22gb|AE010326.1| Methanopyrus kandleri AV19 section 25 of 157 of t... 40 4.8
23ref|NM_188074.1| Oryza sativa (japonica cultivar-group), Ozsa849... 40 4.8
24ref|XM_483345.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.8
25ref|XM_483344.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.8
26ref|XM_593720.2| PREDICTED: Bos taurus similar to essential meio... 40 4.8
27ref|XM_369815.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.8
28ref|XM_417678.1| PREDICTED: Gallus gallus similar to dedicator o... 40 4.8
29gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 4.8
30ref|NG_005542.1| Homo sapiens homeobox C4/C5/C6 cluster (HOXC4/C... 40 4.8
31gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence 40 4.8
32emb|AL133260.12| Human DNA sequence from clone RP1-292B18 on chr... 40 4.8
33emb|X61755.1|HSHOX3D Human HOX3D gene for homeoprotein HOX3D 40 4.8
34dbj|AK126679.1| Homo sapiens cDNA FLJ44724 fis, clone BRACE30243... 40 4.8
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
36dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
37gb|AC021803.8| Homo sapiens chromosome 18, clone RP11-28F1, comp... 40 4.8
38gb|AC009267.15|AC009267 Homo sapiens chromosome 18, clone RP11-4... 40 4.8
39gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, comple... 40 4.8
40gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster 40 4.8
41gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete ... 40 4.8
42gb|AY885693.1| Pseudosciaena crocea clone LYC0003 microsatellite... 40 4.8
43ref|XM_342676.2| PREDICTED: Rattus norvegicus Rho guanine nucleo... 40 4.8
44dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
45dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 4.8
46emb|AL512582.7| Mouse DNA sequence from clone RP23-290H11 on chr... 40 4.8
47dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
48ref|XM_320795.2| Anopheles gambiae str. PEST ENSANGP00000008896 ... 40 4.8
49dbj|AK105385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
50dbj|AK073374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
52emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.8
53emb|AL929120.7| Mouse DNA sequence from clone RP23-457H10 on chr... 40 4.8
54gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 4.8
55gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosom... 40 4.8
56gb|U41058.1|MKU41058 Methanopyrus kandleri reverse gyrase A subu... 40 4.8
57emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chro... 40 4.8 
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                   
Query: 158    ccgccttcgagtcggacgagctgctcctccacgacgacgacgagttcgagggc 210
              |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 116334 ccgccttccagtccgacgagctgctcctccacgacgacgacgagttcgagggc 116282



 Score = 46.1 bits (23), Expect = 0.078
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 316    gagtccaacaccgtccagttcaccctcgagcacgacctcggagccgg 362
              ||||||| | |||| |||||| | ||||||||||||||||| |||||
Sbjct: 116185 gagtccagcgccgtgcagttctcgctcgagcacgacctcggcgccgg 116139
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                    
Query: 158     ccgccttcgagtcggacgagctgctcctccacgacgacgacgagttcgagggc 210
               |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8901893 ccgccttccagtccgacgagctgctcctccacgacgacgacgagttcgagggc 8901945



 Score = 46.1 bits (23), Expect = 0.078
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 316     gagtccaacaccgtccagttcaccctcgagcacgacctcggagccgg 362
               ||||||| | |||| |||||| | ||||||||||||||||| |||||
Sbjct: 8902042 gagtccagcgccgtgcagttctcgctcgagcacgacctcggcgccgg 8902088
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                    
Query: 158     ccgccttcgagtcggacgagctgctcctccacgacgacgacgagttcgagggc 210
               |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8973556 ccgccttccagtccgacgagctgctcctccacgacgacgacgagttcgagggc 8973608



 Score = 46.1 bits (23), Expect = 0.078
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 316     gagtccaacaccgtccagttcaccctcgagcacgacctcggagccgg 362
               ||||||| | |||| |||||| | ||||||||||||||||| |||||
Sbjct: 8973705 gagtccagcgccgtgcagttctcgctcgagcacgacctcggcgccgg 8973751
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>gb|AY105890.1| Zea mays PCO111077 mRNA sequence
          Length = 1356

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 154 gccgccgccttcgagtcggacgagctgctcctccacgacgacgacgagttcgagggc 210
           |||||| ||||| | || |||||||| |||||| |||| ||||| ||||||||||||
Sbjct: 189 gccgcctccttccattccgacgagctcctcctcaacgatgacgaagagttcgagggc 245



 Score = 46.1 bits (23), Expect = 0.078
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 315 cgagtccaacaccgtccagttcaccctcgagcacgacct 353
           |||||||||| | || |||||||| ||||||||||||||
Sbjct: 341 cgagtccaacgcagtgcagttcacgctcgagcacgacct 379
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>gb|AY623114.1| Homo sapiens polymerase (DNA directed) sigma (POLS) gene, complete
            cds
          Length = 23504

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 212  ccagggcctcctccaccccctc 233
            ||||||||||||||||||||||
Sbjct: 9433 ccagggcctcctccaccccctc 9454
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>gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, complete sequence
          Length = 240582

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 57     agcctgagccccttcacccaaa 78
              ||||||||||||||||||||||
Sbjct: 152588 agcctgagccccttcacccaaa 152609
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>gb|AC128666.4| Mus musculus BAC clone RP24-153M4 from chromosome 7, complete sequence
          Length = 138751

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 57    agcctgagccccttcacccaaa 78
             ||||||||||||||||||||||
Sbjct: 26991 agcctgagccccttcacccaaa 27012
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>gb|AC122710.3| Homo sapiens chromosome 5 clone RP11-332J15, complete sequence
          Length = 204540

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 212   ccagggcctcctccaccccctc 233
             ||||||||||||||||||||||
Sbjct: 67019 ccagggcctcctccaccccctc 67040
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>ref|XM_462798.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1280

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 218 cctcctccaccccctcccctc 238
           |||||||||||||||||||||
Sbjct: 104 cctcctccaccccctcccctc 124
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>gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, complete sequence
          Length = 280763

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 217    gcctcctccaccccctcccct 237
              |||||||||||||||||||||
Sbjct: 168111 gcctcctccaccccctcccct 168131
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>emb|AJ429077.1|HMA429077 Haloarcula marismortui ORF11, ORF10, ORF1, ORF2, ORF3, ORF4, narG gene,
             narH gene, ORF7, ORF8, narJ gene and ORF12 (partial)
          Length = 11087

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   cacgacgacgacgagttcgag 207
             |||||||||||||||||||||
Sbjct: 11014 cacgacgacgacgagttcgag 11034
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>gb|DQ388768.1| Sus scrofa calcium-activated neutral protease 1 (CAPN1) gene, exons
           20 through 22 and partial cds
          Length = 963

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 217 gcctcctccaccccctcccctcggc 241
           |||||||||| ||||||||||||||
Sbjct: 360 gcctcctccagcccctcccctcggc 336
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 218      cctcctccaccccctcccctc 238
                |||||||||||||||||||||
Sbjct: 23150680 cctcctccaccccctcccctc 23150660
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 218     cctcctccaccccctcccctc 238
               |||||||||||||||||||||
Sbjct: 3495456 cctcctccaccccctcccctc 3495436



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 181     ctcctccacgacgacgacgagttcgagg 208
               |||||| | |||||||||||||||||||
Sbjct: 9442935 ctcctcgaggacgacgacgagttcgagg 9442908
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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1126_D09
          Length = 138615

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 218    cctcctccaccccctcccctc 238
              |||||||||||||||||||||
Sbjct: 117718 cctcctccaccccctcccctc 117698
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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1276_B06
          Length = 175174

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   cctcctccaccccctcccctc 238
             |||||||||||||||||||||
Sbjct: 63524 cctcctccaccccctcccctc 63504
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>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1568_B05
          Length = 115325

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 218  cctcctccaccccctcccctc 238
            |||||||||||||||||||||
Sbjct: 7911 cctcctccaccccctcccctc 7891
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 187     cacgacgacgacgagttcgag 207
               |||||||||||||||||||||
Sbjct: 1073099 cacgacgacgacgagttcgag 1073119
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>dbj|AK063678.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E03, full
           insert sequence
          Length = 1280

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 218 cctcctccaccccctcccctc 238
           |||||||||||||||||||||
Sbjct: 104 cctcctccaccccctcccctc 124
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>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   cctcctccaccccctcccctc 238
             |||||||||||||||||||||
Sbjct: 82216 cctcctccaccccctcccctc 82196
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 210     caccagggcctcctccaccccctcc 234
               |||||||||| ||||||||||||||
Sbjct: 1860256 caccagggccgcctccaccccctcc 1860232
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>gb|AE010326.1| Methanopyrus kandleri AV19 section 25 of 157 of the complete genome
          Length = 9117

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gccgatctccctcctccagt 46
            ||||||||||||||||||||
Sbjct: 8251 gccgatctccctcctccagt 8270
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>ref|NM_188074.1| Oryza sativa (japonica cultivar-group), Ozsa8494 predicted mRNA
          Length = 309

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 181 ctcctccacgacgacgacgagttcgagg 208
           |||||| | |||||||||||||||||||
Sbjct: 52  ctcctcgaggacgacgacgagttcgagg 79
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>ref|XM_483345.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1060

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 gcctcctccaccccctcccc 236
           ||||||||||||||||||||
Sbjct: 122 gcctcctccaccccctcccc 103
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>ref|XM_483344.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 gcctcctccaccccctcccc 236
           ||||||||||||||||||||
Sbjct: 124 gcctcctccaccccctcccc 105
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>ref|XM_593720.2| PREDICTED: Bos taurus similar to essential meiotic endonuclease 1
           homolog 2 (LOC515662), mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 gcaccagggcctcctccacc 228
           ||||||||||||||||||||
Sbjct: 652 gcaccagggcctcctccacc 633
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>ref|XM_369815.1| Magnaporthe grisea 70-15 hypothetical protein (MG06330.4) partial
           mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 327 cgtccagttcaccctcgagcacga 350
           ||||||||||| ||||||||||||
Sbjct: 51  cgtccagttcaacctcgagcacga 74
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>ref|XM_417678.1| PREDICTED: Gallus gallus similar to dedicator of cytokinesis 5
            (LOC419527), mRNA
          Length = 5957

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tcccctcggccgccctcgac 251
            ||||||||||||||||||||
Sbjct: 3697 tcccctcggccgccctcgac 3678
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 51      agtccaagcctgagccccttcacc 74
               ||||| ||||||||||||||||||
Sbjct: 3717831 agtcccagcctgagccccttcacc 3717854
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>ref|NG_005542.1| Homo sapiens homeobox C4/C5/C6 cluster (HOXC4/C5/C6@) on chromosome 12
          Length = 40195

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 208   ggcaccagggcctcctccaccccctccc 235
             |||||||||| ||||||||||| |||||
Sbjct: 14863 ggcaccagggtctcctccacccactccc 14890
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>gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence
          Length = 167732

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 329   tccagttcaccctcgagcacgacc 352
             ||||| ||||||||||||||||||
Sbjct: 79146 tccagctcaccctcgagcacgacc 79169
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>emb|AL133260.12| Human DNA sequence from clone RP1-292B18 on chromosome 6q24.3-25.3
             Contains a 60S ribosomal protein L32 (RPL32) pseudogene,
             the 3' end of the gene for a novel protein similar to
             C1-tetrahydrofolate synthases (contains DKFZP586G1517
             protein and FLJ21145, contains a tetrahydrofolate
             dehydrogenase/cyclohydrolase domain), part of a novel gene
             and a novel gene, complete sequence
          Length = 109310

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ctcctccagtccagagtcca 56
             ||||||||||||||||||||
Sbjct: 13493 ctcctccagtccagagtcca 13512
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>emb|X61755.1|HSHOX3D Human HOX3D gene for homeoprotein HOX3D
          Length = 4968

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 208 ggcaccagggcctcctccaccccctccc 235
           |||||||||| ||||||||||| |||||
Sbjct: 439 ggcaccagggtctcctccacccactccc 466
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>dbj|AK126679.1| Homo sapiens cDNA FLJ44724 fis, clone BRACE3024359, highly  similar
           to Homo sapiens follicular lymphoma variant
           translocation 1 (FVT1)
          Length = 3378

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tccaccccctcccctcggcc 242
           ||||||||||||||||||||
Sbjct: 812 tccaccccctcccctcggcc 831
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 218      cctcctccaccccctcccct 237
                ||||||||||||||||||||
Sbjct: 18659334 cctcctccaccccctcccct 18659353
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 217      gcctcctccaccccctcccc 236
                ||||||||||||||||||||
Sbjct: 25683264 gcctcctccaccccctcccc 25683283
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>gb|AC021803.8| Homo sapiens chromosome 18, clone RP11-28F1, complete sequence
          Length = 117121

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   tccaccccctcccctcggcc 242
             ||||||||||||||||||||
Sbjct: 11806 tccaccccctcccctcggcc 11825
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>gb|AC009267.15|AC009267 Homo sapiens chromosome 18, clone RP11-495C15, complete sequence
          Length = 188923

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   tccaccccctcccctcggcc 242
             ||||||||||||||||||||
Sbjct: 59452 tccaccccctcccctcggcc 59433
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>gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, complete sequence
          Length = 111073

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   cctcctccaccccctcccct 237
             ||||||||||||||||||||
Sbjct: 74167 cctcctccaccccctcccct 74148
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>gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster
          Length = 152740

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 208    ggcaccagggcctcctccaccccctccc 235
              |||||||||| ||||||||||| |||||
Sbjct: 109761 ggcaccagggtctcctccacccactccc 109788
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>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence
          Length = 171949

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 208    ggcaccagggcctcctccaccccctccc 235
              |||||||||| ||||||||||| |||||
Sbjct: 168812 ggcaccagggtctcctccacccactccc 168839
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>gb|AY885693.1| Pseudosciaena crocea clone LYC0003 microsatellite sequence
          Length = 332

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 ctcctccaccccctcccctc 238
           ||||||||||||||||||||
Sbjct: 105 ctcctccaccccctcccctc 124
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>ref|XM_342676.2| PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor
           (GEF) 5 (Arhgef5), mRNA
          Length = 5302

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 203 tcgagggcaccagggcctcctcca 226
           ||||||||| ||||||||||||||
Sbjct: 639 tcgagggcaacagggcctcctcca 662
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>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0693B08
          Length = 140812

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 181    ctcctccacgacgacgacgagttcgagg 208
              |||||| | |||||||||||||||||||
Sbjct: 113262 ctcctcgaggacgacgacgagttcgagg 113235
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 212    ccagggcctcctccaccccctccc 235
              |||||||||||||||||| |||||
Sbjct: 476046 ccagggcctcctccacccgctccc 476069
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>emb|AL512582.7| Mouse DNA sequence from clone RP23-290H11 on chromosome 2, complete
             sequence
          Length = 115075

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    ccaagcctgagccccttcac 73
             ||||||||||||||||||||
Sbjct: 80202 ccaagcctgagccccttcac 80183
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>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0700D12
          Length = 145177

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gcctcctccaccccctcccc 236
             ||||||||||||||||||||
Sbjct: 61012 gcctcctccaccccctcccc 61031
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>ref|XM_320795.2| Anopheles gambiae str. PEST ENSANGP00000008896 (ENSANGG00000006700),
            partial mRNA
          Length = 2932

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  cttcgagtcggacgagctgc 181
            ||||||||||||||||||||
Sbjct: 2415 cttcgagtcggacgagctgc 2434
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>dbj|AK105385.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G10, full
           insert sequence
          Length = 1060

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 gcctcctccaccccctcccc 236
           ||||||||||||||||||||
Sbjct: 122 gcctcctccaccccctcccc 103
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>dbj|AK073374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029M19, full
           insert sequence
          Length = 971

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 gcctcctccaccccctcccc 236
           ||||||||||||||||||||
Sbjct: 124 gcctcctccaccccctcccc 105
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 218      cctcctccaccccctcccct 237
                ||||||||||||||||||||
Sbjct: 18585560 cctcctccaccccctcccct 18585579
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>emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa0023G11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 180599

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   cctcctccaccccctcccct 237
             ||||||||||||||||||||
Sbjct: 92786 cctcctccaccccctcccct 92805
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>emb|AL929120.7| Mouse DNA sequence from clone RP23-457H10 on chromosome 2, complete
             sequence
          Length = 178517

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   cctcctccaccccctcccct 237
             ||||||||||||||||||||
Sbjct: 69099 cctcctccaccccctcccct 69118
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 212    ccagggcctcctccaccccctccc 235
              |||||||||||||||||| |||||
Sbjct: 120209 ccagggcctcctccacccgctccc 120232
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>gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosome 13, complete sequence
          Length = 212206

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    cctcctccaccccctcccct 237
              ||||||||||||||||||||
Sbjct: 177751 cctcctccaccccctcccct 177732
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>gb|U41058.1|MKU41058 Methanopyrus kandleri reverse gyrase A subunit (rgyA) gene,
           complete cds
          Length = 1171

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 27  gccgatctccctcctccagt 46
           ||||||||||||||||||||
Sbjct: 742 gccgatctccctcctccagt 723
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>emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chromosome 2, complete
             sequence
          Length = 191638

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   cctcctccaccccctcccct 237
             ||||||||||||||||||||
Sbjct: 23578 cctcctccaccccctcccct 23559


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,417,100
Number of Sequences: 3902068
Number of extensions: 2417100
Number of successful extensions: 64809
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63705
Number of HSP's gapped (non-prelim): 1104
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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