ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast18e08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 222 bits (112), Expect = 7e-55 Identities = 169/188 (89%) Strand = Plus / Minus Query: 176 gtcgctgctgggcatcaactacggccgcgtggggaacaacctgccgccgccgcaggccgc 235 ||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct: 7679899 gtcgctggtgggcatcaactacggccgcgtggggagcaacctcccgccgccgcaggccgt 7679840 Query: 236 gctgcccctgctccagggcctcggcattgcgcgcgtgcggctctacgaccccgagcctgg 295 |||||| |||||| ||||||||||||||| |||||||||||||||||| |||| |||| Sbjct: 7679839 gctgccgctgctcgagggcctcggcattggccgcgtgcggctctacgacgccgaccctgc 7679780 Query: 296 cgtgctgcgcgccttcgcctggaccgggatcgagctctacgtcggcgtgcccgaccagtg 355 ||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct: 7679779 tgtgctgcacgccttcgccaagaccggggtcgagctcttcgtcggcgtgcccgaccagtc 7679720 Query: 356 cctcgccg 363 ||| |||| Sbjct: 7679719 cctggccg 7679712 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 cctgccgccgccgcaggccgc 235 ||||||||||||||||||||| Sbjct: 23956445 cctgccgccgccgcaggccgc 23956425 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 cctgccgccgccgcaggccgc 235 ||||||||||||||||||||| Sbjct: 23874720 cctgccgccgccgcaggccgc 23874700 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 34098865 ctccctccgccccgctccgc 34098884 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 8354298 ctccctccgccccgctccgc 8354279
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 222 bits (112), Expect = 7e-55 Identities = 169/188 (89%) Strand = Plus / Plus Query: 176 gtcgctgctgggcatcaactacggccgcgtggggaacaacctgccgccgccgcaggccgc 235 ||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct: 35391 gtcgctggtgggcatcaactacggccgcgtggggagcaacctcccgccgccgcaggccgt 35450 Query: 236 gctgcccctgctccagggcctcggcattgcgcgcgtgcggctctacgaccccgagcctgg 295 |||||| |||||| ||||||||||||||| |||||||||||||||||| |||| |||| Sbjct: 35451 gctgccgctgctcgagggcctcggcattggccgcgtgcggctctacgacgccgaccctgc 35510 Query: 296 cgtgctgcgcgccttcgcctggaccgggatcgagctctacgtcggcgtgcccgaccagtg 355 ||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct: 35511 tgtgctgcacgccttcgccaagaccggggtcgagctcttcgtcggcgtgcccgaccagtc 35570 Query: 356 cctcgccg 363 ||| |||| Sbjct: 35571 cctggccg 35578
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 222 bits (112), Expect = 7e-55 Identities = 169/188 (89%) Strand = Plus / Minus Query: 176 gtcgctgctgggcatcaactacggccgcgtggggaacaacctgccgccgccgcaggccgc 235 ||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct: 7677734 gtcgctggtgggcatcaactacggccgcgtggggagcaacctcccgccgccgcaggccgt 7677675 Query: 236 gctgcccctgctccagggcctcggcattgcgcgcgtgcggctctacgaccccgagcctgg 295 |||||| |||||| ||||||||||||||| |||||||||||||||||| |||| |||| Sbjct: 7677674 gctgccgctgctcgagggcctcggcattggccgcgtgcggctctacgacgccgaccctgc 7677615 Query: 296 cgtgctgcgcgccttcgcctggaccgggatcgagctctacgtcggcgtgcccgaccagtg 355 ||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct: 7677614 tgtgctgcacgccttcgccaagaccggggtcgagctcttcgtcggcgtgcccgaccagtc 7677555 Query: 356 cctcgccg 363 ||| |||| Sbjct: 7677554 cctggccg 7677547 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 cctgccgccgccgcaggccgc 235 ||||||||||||||||||||| Sbjct: 23867808 cctgccgccgccgcaggccgc 23867788 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 34189337 ctccctccgccccgctccgc 34189356 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 8352133 ctccctccgccccgctccgc 8352114
>dbj|AK106861.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C04, full insert sequence Length = 1617 Score = 222 bits (112), Expect = 7e-55 Identities = 169/188 (89%) Strand = Plus / Plus Query: 176 gtcgctgctgggcatcaactacggccgcgtggggaacaacctgccgccgccgcaggccgc 235 ||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct: 232 gtcgctggtgggcatcaactacggccgcgtggggagcaacctcccgccgccgcaggccgt 291 Query: 236 gctgcccctgctccagggcctcggcattgcgcgcgtgcggctctacgaccccgagcctgg 295 |||||| |||||| ||||||||||||||| |||||||||||||||||| |||| |||| Sbjct: 292 gctgccgctgctcgagggcctcggcattggccgcgtgcggctctacgacgccgaccctgc 351 Query: 296 cgtgctgcgcgccttcgcctggaccgggatcgagctctacgtcggcgtgcccgaccagtg 355 ||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct: 352 tgtgctgcacgccttcgccaagaccggggtcgagctcttcgtcggcgtgcccgaccagtc 411 Query: 356 cctcgccg 363 ||| |||| Sbjct: 412 cctggccg 419
>ref|NM_194967.1| Oryza sativa (japonica cultivar-group) putative beta-1,3-glucanase (OSJNBa0050E08.13), mRNA Length = 1257 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 179 gctgctgggcatcaactacggccgcgtggggaacaacctgcc 220 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 69 gctgctgggcatcaactacggccgcgtcggcaacaacctgcc 110
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08, complete sequence Length = 180499 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 179 gctgctgggcatcaactacggccgcgtggggaacaacctgcc 220 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 112283 gctgctgggcatcaactacggccgcgtcggcaacaacctgcc 112242
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 179 gctgctgggcatcaactacggccgcgtggggaacaacctgcc 220 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 3830487 gctgctgggcatcaactacggccgcgtcggcaacaacctgcc 3830446 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 gccgccgccgcaggccgcgctgcc 241 ||||||||||| |||||||||||| Sbjct: 21397400 gccgccgccgccggccgcgctgcc 21397423 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 20458290 ctccctccgccccgctccgc 20458271
>dbj|AK120028.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C12, full insert sequence Length = 1625 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 179 gctgctgggcatcaactacggccgcgtggggaacaacctgcc 220 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 125 gctgctgggcatcaactacggccgcgtcggcaacaacctgcc 166
>dbj|AK073394.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044A03, full insert sequence Length = 1707 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 179 gctgctgggcatcaactacggccgcgtggggaacaacctgcc 220 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 170 gctgctgggcatcaactacggccgcgtcggcaacaacctgcc 211
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 179 gctgctgggcatcaactacggccgcgtggggaacaacctgcc 220 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 3830408 gctgctgggcatcaactacggccgcgtcggcaacaacctgcc 3830367 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 gccgccgccgcaggccgcgctgcc 241 ||||||||||| |||||||||||| Sbjct: 21408663 gccgccgccgccggccgcgctgcc 21408686 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 20469562 ctccctccgccccgctccgc 20469543
>gb|AF488414.1| Pennisetum glaucum BAC 311G2 complete sequence Length = 123096 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 182 gctgggcatcaactacggccgcgtggggaacaacctgccgccgccgcaggc 232 |||||| ||||||||||||| |||| | |||||||||||||||||||||| Sbjct: 15369 gctggggatcaactacggccaggtggcggacaacctgccgccgccgcaggc 15319
>gb|AY106411.1| Zea mays PCO106344 mRNA sequence Length = 1217 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 192 aactacggccgcgtggggaacaacctgccg 221 |||||||||||||||| ||||||||||||| Sbjct: 161 aactacggccgcgtggcgaacaacctgccg 190
>emb|AL445704.18| Human DNA sequence from clone RP11-99F4 on chromosome 1 Contains the 5' end of a novel gene (FLJ40773) and a CpG island, complete sequence Length = 163621 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 55 cacctcgccctccctccctccgccccgc 82 ||||||||||||||||| |||||||||| Sbjct: 135942 cacctcgccctccctccttccgccccgc 135915
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 48.1 bits (24), Expect = 0.021 Identities = 30/32 (93%) Strand = Plus / Minus Query: 109 tccgcgacggcctccggcggcggctccagcgc 140 ||||||||| ||||| |||||||||||||||| Sbjct: 2309649 tccgcgacgccctccagcggcggctccagcgc 2309618 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cctccgccccgctccgctcc 90 |||||||||||||||||||| Sbjct: 3348268 cctccgccccgctccgctcc 3348287
>ref|XM_480882.1| Oryza sativa (japonica cultivar-group), mRNA Length = 264 Score = 46.1 bits (23), Expect = 0.084 Identities = 32/35 (91%) Strand = Plus / Plus Query: 354 tgcctcgccgcggtcgccgagccggccggcgccgc 388 |||||||||||| |||||| | ||||||||||||| Sbjct: 34 tgcctcgccgcgctcgccgcggcggccggcgccgc 68
>ref|XM_480883.1| Oryza sativa (japonica cultivar-group), mRNA Length = 982 Score = 46.1 bits (23), Expect = 0.084 Identities = 32/35 (91%) Strand = Plus / Plus Query: 354 tgcctcgccgcggtcgccgagccggccggcgccgc 388 |||||||||||| |||||| | ||||||||||||| Sbjct: 49 tgcctcgccgcgctcgccgcggcggccggcgccgc 83
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.084 Identities = 32/35 (91%) Strand = Plus / Plus Query: 354 tgcctcgccgcggtcgccgagccggccggcgccgc 388 |||||||||||| |||||| | ||||||||||||| Sbjct: 8405759 tgcctcgccgcgctcgccgcggcggccggcgccgc 8405793 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 119 cctccggcggcggctccagcgcgca 143 |||||||||||||||| |||||||| Sbjct: 4838468 cctccggcggcggctcgagcgcgca 4838444
>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1217_D10 Length = 103188 Score = 46.1 bits (23), Expect = 0.084 Identities = 32/35 (91%) Strand = Plus / Plus Query: 354 tgcctcgccgcggtcgccgagccggccggcgccgc 388 |||||||||||| |||||| | ||||||||||||| Sbjct: 21476 tgcctcgccgcgctcgccgcggcggccggcgccgc 21510
>dbj|AK059758.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E06, full insert sequence Length = 980 Score = 46.1 bits (23), Expect = 0.084 Identities = 32/35 (91%) Strand = Plus / Plus Query: 354 tgcctcgccgcggtcgccgagccggccggcgccgc 388 |||||||||||| |||||| | ||||||||||||| Sbjct: 49 tgcctcgccgcgctcgccgcggcggccggcgccgc 83
>ref|XM_658832.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6320.2), mRNA Length = 3060 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 324 atcgagctctacgtcggcgtgc 345 |||||||||||||||||||||| Sbjct: 1264 atcgagctctacgtcggcgtgc 1285
>gb|AY940146.1| Emericella nidulans fatty acid oxygenase (ppoB) gene, complete cds Length = 4197 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 324 atcgagctctacgtcggcgtgc 345 |||||||||||||||||||||| Sbjct: 2078 atcgagctctacgtcggcgtgc 2057
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Plus Query: 182 gctgggcatcaactacggccgcgtggggaacaacctgccgccgccg 227 |||||| || |||||||| | |||||||||||||||||| ||||| Sbjct: 19466527 gctggggataaactacgggcaggtggggaacaacctgccgtcgccg 19466572 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 cctccctccctccgccccgctccgc 87 |||| |||||||||||||||||||| Sbjct: 29396597 cctctctccctccgccccgctccgc 29396621 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ctcgccgcgccggcgccggtg 176 ||||||||||||||||||||| Sbjct: 350816 ctcgccgcgccggcgccggtg 350836 Score = 40.1 bits (20), Expect = 5.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 185 gggcatcaactacggccgcgtggggaacaacctgcc 220 |||||||||||||| ||| || || ||||||||||| Sbjct: 20605682 gggcatcaactacgaccgtgtcggcaacaacctgcc 20605717 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gccctccctccctccgcccc 80 |||||||||||||||||||| Sbjct: 2022477 gccctccctccctccgcccc 2022458
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Plus Query: 182 gctgggcatcaactacggccgcgtggggaacaacctgccgccgccg 227 |||||| || |||||||| | |||||||||||||||||| ||||| Sbjct: 84936 gctggggataaactacgggcaggtggggaacaacctgccgtcgccg 84981
>ref|NM_185322.1| Oryza sativa (japonica cultivar-group), mRNA Length = 459 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ctcgccgcgccggcgccggtg 176 ||||||||||||||||||||| Sbjct: 161 ctcgccgcgccggcgccggtg 141
>ref|XM_523744.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 2410002I01 (LOC468355), mRNA Length = 2979 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 cgctgcccctgctccagggcc 255 ||||||||||||||||||||| Sbjct: 1482 cgctgcccctgctccagggcc 1462
>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence Length = 130987 Score = 42.1 bits (21), Expect = 1.3 Identities = 48/57 (84%) Strand = Plus / Minus Query: 295 gcgtgctgcgcgccttcgcctggaccgggatcgagctctacgtcggcgtgcccgacc 351 ||||||| |||||||||||| | ||||| |||| || ||||||||||||||||| Sbjct: 64376 gcgtgctccgcgccttcgccggctccggggtcgacttcaccgtcggcgtgcccgacc 64320
>gb|AC133931.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013M05 map C3, complete sequence Length = 131117 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 108 ctccgcgacggcctccggcggcggc 132 ||||||| ||||||||||||||||| Sbjct: 57909 ctccgcgtcggcctccggcggcggc 57933
>gb|AC146816.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1434D10 map near E1419S, complete sequence Length = 133421 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 cctgccgccgccgcaggccgc 235 ||||||||||||||||||||| Sbjct: 30333 cctgccgccgccgcaggccgc 30353
>gb|AC147804.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0070G02 map near S13580, complete sequence Length = 73686 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 cctgccgccgccgcaggccgc 235 ||||||||||||||||||||| Sbjct: 69410 cctgccgccgccgcaggccgc 69430
>ref|XM_580672.2| PREDICTED: Bos taurus similar to pleckstrin homology domain containing, family G (with RhoGef domain) member 2, transcript variant 1 (LOC504530), mRNA Length = 4545 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 gctgcccctgctccagggcct 256 ||||||||||||||||||||| Sbjct: 2374 gctgcccctgctccagggcct 2354
>ref|XM_878427.1| PREDICTED: Bos taurus similar to pleckstrin homology domain containing, family G (with RhoGef domain) member 2, transcript variant 4 (LOC504530), mRNA Length = 4611 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 gctgcccctgctccagggcct 256 ||||||||||||||||||||| Sbjct: 2374 gctgcccctgctccagggcct 2354
>ref|XM_866405.1| PREDICTED: Bos taurus similar to pleckstrin homology domain containing, family G (with RhoGef domain) member 2, transcript variant 2 (LOC504530), mRNA Length = 4563 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 gctgcccctgctccagggcct 256 ||||||||||||||||||||| Sbjct: 2326 gctgcccctgctccagggcct 2306
>ref|XM_878344.1| PREDICTED: Bos taurus similar to pleckstrin homology domain containing, family G (with RhoGef domain) member 2, transcript variant 3 (LOC504530), mRNA Length = 4524 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 gctgcccctgctccagggcct 256 ||||||||||||||||||||| Sbjct: 2287 gctgcccctgctccagggcct 2267
>ref|XM_541623.2| PREDICTED: Canis familiaris similar to pleckstrin homology domain containing, family G (with RhoGef domain) member 2 (LOC484509), mRNA Length = 4467 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 gctgcccctgctccagggcct 256 ||||||||||||||||||||| Sbjct: 2512 gctgcccctgctccagggcct 2492
>gb|BC113237.1| Bos taurus CD5 antigen (p56-62), mRNA (cDNA clone MGC:137790 IMAGE:8083094), complete cds Length = 1998 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 gccctccctccctccgccccgctcc 85 |||||||||||| |||||||||||| Sbjct: 1906 gccctccctcccaccgccccgctcc 1882
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 ccggcggcggctccagcgcgc 142 ||||||||||||||||||||| Sbjct: 221735 ccggcggcggctccagcgcgc 221755
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 355 gcctcgccgcggtcgccgagccggc 379 ||||||||| ||||||||||||||| Sbjct: 4291554 gcctcgccgtggtcgccgagccggc 4291530 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ctcgccgcggtcgccgagcc 376 |||||||||||||||||||| Sbjct: 4205913 ctcgccgcggtcgccgagcc 4205932
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 ccatctcgccgcgccggcgccggtg 176 |||||||||||||| |||||||||| Sbjct: 966963 ccatctcgccgcgcaggcgccggtg 966987 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 357 ctcgccgcggtcgccgagccggccggcg 384 |||||||||||||||| | ||||||||| Sbjct: 493485 ctcgccgcggtcgccgcggcggccggcg 493458
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 108 ctccgcgacggcctccggcggcggc 132 ||||||| ||||||||||||||||| Sbjct: 13473350 ctccgcgtcggcctccggcggcggc 13473374
>ref|NM_173899.2| Bos taurus CD5 antigen (p56-62) (CD5), mRNA Length = 1953 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 gccctccctccctccgccccgctcc 85 |||||||||||| |||||||||||| Sbjct: 1884 gccctccctcccaccgccccgctcc 1860
>ref|XM_230663.3| PREDICTED: Rattus norvegicus paired box gene 1 (Pax1), mRNA Length = 1605 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 gccgccgccgcaggccgcgctgccc 242 ||||||||||||| ||||||||||| Sbjct: 747 gccgccgccgcagcccgcgctgccc 771
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 cctccctccctccgccccgctccgc 87 |||| |||||||||||||||||||| Sbjct: 107478 cctctctccctccgccccgctccgc 107502
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ctcgccgcgccggcgccggtg 176 ||||||||||||||||||||| Sbjct: 60769 ctcgccgcgccggcgccggtg 60789
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 ggcgtgctgcgcgccttcgcc 314 ||||||||||||||||||||| Sbjct: 2060202 ggcgtgctgcgcgccttcgcc 2060182
>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056D04 Length = 158118 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 119 cctccggcggcggctccagcgcgca 143 |||||||||||||||| |||||||| Sbjct: 43262 cctccggcggcggctcgagcgcgca 43238
>dbj|AK111457.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C07, full insert sequence Length = 874 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 ctccgcgacggcctccggcggcggc 132 ||||||| ||||||||||||||||| Sbjct: 210 ctccgcgtcggcctccggcggcggc 186
>dbj|AK073814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068D13, full insert sequence Length = 827 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 ctccgcgacggcctccggcggcggc 132 ||||||| ||||||||||||||||| Sbjct: 177 ctccgcgtcggcctccggcggcggc 153
>ref|NM_207823.1| Eremothecium gossypii AAL072Cp (AAL072C), mRNA Length = 3663 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 ccggcggcggctccagcgcgc 142 ||||||||||||||||||||| Sbjct: 886 ccggcggcggctccagcgcgc 866
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 108 ctccgcgacggcctccggcggcggc 132 ||||||| ||||||||||||||||| Sbjct: 13553529 ctccgcgtcggcctccggcggcggc 13553553
>gb|U51129.1|SAU51129 Stretomyces albus amylase (amy) gene, complete cds Length = 1832 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 cggtcgccgagccggccggcg 384 ||||||||||||||||||||| Sbjct: 505 cggtcgccgagccggccggcg 485
>emb|X53061.1|BTCD5A Bovine mRNA for CD5 antigen Length = 1953 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 gccctccctccctccgccccgctcc 85 |||||||||||| |||||||||||| Sbjct: 1884 gccctccctcccaccgccccgctcc 1860
>gb|M34957.1|STMAMY Streptomyces thermoviolaceus alpha-amylase (amy) gene, complete cds Length = 1712 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 cggtcgccgagccggccggcg 384 ||||||||||||||||||||| Sbjct: 504 cggtcgccgagccggccggcg 484
>gb|AF051132.1| Pseudomonas aeruginosa algV gene, sequence Length = 3529 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ctcgccgcgccggcgccggt 175 |||||||||||||||||||| Sbjct: 421 ctcgccgcgccggcgccggt 440
>ref|NM_183786.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1338 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 tcgccgcgccggcgccggtg 176 |||||||||||||||||||| Sbjct: 979 tcgccgcgccggcgccggtg 960
>ref|NM_006224.2| Homo sapiens phosphatidylinositol transfer protein, alpha (PITPNA), mRNA Length = 3632 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 98 cctcgccgcggtcgccgcgccggc 75
>ref|XM_477287.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1764 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 1642 ctccctccgccccgctccgc 1623
>ref|XM_473666.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2640 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 cggcgtgcccgaccagtgcctcgccgcg 365 |||||||||| ||||| ||||||||||| Sbjct: 642 cggcgtgccctaccagcgcctcgccgcg 669
>ref|XM_472341.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 807 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgccgcggtcgccgagccgg 378 |||||||||||||||||||| Sbjct: 723 cgccgcggtcgccgagccgg 704
>gb|BC082976.1| Homo sapiens phosphatidylinositol transfer protein, alpha, mRNA (cDNA clone MGC:99649 IMAGE:6578454), complete cds Length = 3600 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 38 cctcgccgcggtcgccgcgccggc 15
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 140407 ctccctccgccccgctccgc 140388
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 gcggtcgccgagccggccggcgcc 386 |||||||||||| ||||||||||| Sbjct: 2313311 gcggtcgccgaggcggccggcgcc 2313334
>gb|BC027177.1| Homo sapiens phosphatidylinositol transfer protein, alpha, mRNA (cDNA clone IMAGE:4343128), containing frame-shift errors Length = 1278 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 53 cctcgccgcggtcgccgcgccggc 30
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ccgcgacggcctccggcggcggct 133 |||| ||||||||||||||||||| Sbjct: 2736166 ccgccacggcctccggcggcggct 2736189
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 gccgcgccggcgccggtgtcgctgctgg 186 ||||||||| ||||||||||||||||| Sbjct: 35605 gccgcgccgttgccggtgtcgctgctgg 35632
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 agcctggcgtgctgcgcgcc 308 |||||||||||||||||||| Sbjct: 3885097 agcctggcgtgctgcgcgcc 3885116
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gcggtcgccgagccggccgg 382 |||||||||||||||||||| Sbjct: 1549317 gcggtcgccgagccggccgg 1549336
>gb|BC043623.1| Xenopus laevis RNA binding motif, single stranded interacting protein 1, mRNA (cDNA clone MGC:52966 IMAGE:4930516), complete cds Length = 2754 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 gcaaatctcacctcgccctc 66 |||||||||||||||||||| Sbjct: 974 gcaaatctcacctcgccctc 955
>emb|AL121712.27|HSJ710H13 Human DNA sequence from clone RP4-710H13 on chromosome 20 Contains the SNAI1 gene encoding the snail 1 (drosophila homolog) zinc finger protein, a putative novel gene, two CpG islands, ESTs, STSs and GSSs, complete sequence Length = 79779 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccctccctccgccccgctcc 85 |||||||||||||||||||| Sbjct: 65866 ccctccctccgccccgctcc 65847
>gb|AC158926.4| Mus musculus chromosome 3, clone RP24-93J4, complete sequence Length = 185247 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctccctccgccccgctcc 85 |||||||||||||||||||| Sbjct: 81807 ccctccctccgccccgctcc 81826
>emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin gene cluster, strain DSM 40236 Length = 90600 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 gcggtcgccgagccggccgg 382 |||||||||||||||||||| Sbjct: 49390 gcggtcgccgagccggccgg 49371
>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13 Length = 348247 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ccgcgacggcctccggcggcggct 133 |||| ||||||||||||||||||| Sbjct: 314477 ccgccacggcctccggcggcggct 314500
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gccggtgtcgctgctgggca 189 |||||||||||||||||||| Sbjct: 224188 gccggtgtcgctgctgggca 224207
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gccggtgtcgctgctgggca 189 |||||||||||||||||||| Sbjct: 222345 gccggtgtcgctgctgggca 222364
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gcgccttcgcctggaccggg 323 |||||||||||||||||||| Sbjct: 283262 gcgccttcgcctggaccggg 283281
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ccgcgacggcctccggcggcggct 133 |||| ||||||||||||||||||| Sbjct: 196479 ccgccacggcctccggcggcggct 196502
>emb|AL663012.3|OSJN00217 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0069N01, complete sequence Length = 180264 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 gcgtgctgcgcgccttcgcc 314 |||||||||||||||||||| Sbjct: 90956 gcgtgctgcgcgccttcgcc 90937
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 cggcgtgcccgaccagtgcctcgccgcg 365 |||||||||| ||||| ||||||||||| Sbjct: 169313 cggcgtgccctaccagcgcctcgccgcg 169340
>gb|BC068538.1| Homo sapiens phosphatidylinositol transfer protein, alpha, mRNA (cDNA clone IMAGE:4818885), partial cds Length = 3554 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 121 cctcgccgcggtcgccgcgccggc 98
>gb|BC045108.1| Homo sapiens phosphatidylinositol transfer protein, alpha, mRNA (cDNA clone MGC:52217 IMAGE:5454273), complete cds Length = 3632 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 98 cctcgccgcggtcgccgcgccggc 75
>gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, complete sequence Length = 171605 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cctccctccgccccgctccgctcc 90 ||||||||||| |||||||||||| Sbjct: 118422 cctccctccgctccgctccgctcc 118399
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 98438 ctccctccgccccgctccgc 98419
>gb|AC100748.2| Homo sapiens chromosome 17, clone CTD-2231E3, complete sequence Length = 133544 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 7279 cctcgccgcggtcgccgcgccggc 7256
>emb|CR598414.1| full-length cDNA clone CS0DC002YG10 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1398 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 83 cctcgccgcggtcgccgcgccggc 60
>gb|AE012548.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 456 of 460 of the complete genome Length = 10206 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 caggccgcgctgcccctgctccag 251 ||||||||||||| |||||||||| Sbjct: 6242 caggccgcgctgcacctgctccag 6265
>gb|AY028431.1| Burkholderia cepacia genomovar III putative type III secretion gene cluster, complete sequence Length = 34600 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 cctgccgccgccgcaggccgcgct 238 |||||||| ||||||||||||||| Sbjct: 4334 cctgccgctgccgcaggccgcgct 4357
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 gccgccgccgcaggccgcgctgcc 241 ||||||||||| |||||||||||| Sbjct: 72413 gccgccgccgccggccgcgctgcc 72436
>gb|AF419397.1| Newcastle disease virus chicken/U.S./CA1083(Fontana)/72 nucleocapsid protein gene, complete cds Length = 1597 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ggcccaaaaccttcgcccgt 46 |||||||||||||||||||| Sbjct: 1568 ggcccaaaaccttcgcccgt 1587
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tgccgccgccgcaggccgcg 236 |||||||||||||||||||| Sbjct: 1363176 tgccgccgccgcaggccgcg 1363157 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 cctcgccgcggtcgccgagc 375 |||||||||||||||||||| Sbjct: 1206965 cctcgccgcggtcgccgagc 1206984
>gb|DP000050.1| Felis catus target 126 genomic scaffold Length = 269350 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 ccctccctccctccgccccgctcc 85 ||||||||||||||||||| |||| Sbjct: 40909 ccctccctccctccgcccctctcc 40886
>gb|AC101979.13| Mus musculus chromosome 3, clone RP24-338A7, complete sequence Length = 161025 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctccctccgccccgctcc 85 |||||||||||||||||||| Sbjct: 127460 ccctccctccgccccgctcc 127479
>gb|AY525384.1| Methylosinus sp. LW4 methenyltetrahydromethanopterin cyclohydrolase (mch) gene, partial cds Length = 417 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cgacggcctccggcggcggc 132 |||||||||||||||||||| Sbjct: 182 cgacggcctccggcggcggc 163
>gb|AY525383.1| Methylosinus sp. LW8 methenyltetrahydromethanopterin cyclohydrolase (mch) gene, partial cds Length = 416 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cgacggcctccggcggcggc 132 |||||||||||||||||||| Sbjct: 181 cgacggcctccggcggcggc 162
>gb|AY525382.1| Methylosinus sp. LW3 methenyltetrahydromethanopterin cyclohydrolase (mch) gene, partial cds Length = 416 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cgacggcctccggcggcggc 132 |||||||||||||||||||| Sbjct: 236 cgacggcctccggcggcggc 255
>gb|AC130343.7| Homo sapiens chromosome 17, clone RP11-961A15, complete sequence Length = 217253 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 12206 cctcgccgcggtcgccgcgccggc 12229
>gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, complete sequence Length = 173919 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cctccctccgccccgctccgctcc 90 ||||||||||| |||||||||||| Sbjct: 106880 cctccctccgctccgctccgctcc 106903
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 tcgccgcgccggcgccggtgtcgctgct 184 ||||||||||||||||| ||| |||||| Sbjct: 43036 tcgccgcgccggcgccgctgtggctgct 43009
>gb|AF226874.1| Pseudomonas aeruginosa mucoidy inhibitor A (muiA) gene, complete cds; and periplasmic sulfate binding protein (sbp) gene, partial cds Length = 3532 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ctcgccgcgccggcgccggt 175 |||||||||||||||||||| Sbjct: 420 ctcgccgcgccggcgccggt 439
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 caggccgcgctgcccctgctccag 251 ||||||||||||| |||||||||| Sbjct: 5105510 caggccgcgctgcacctgctccag 5105533
>gb|AY885500.1| Uncultured sulfate-reducing bacterium clone FW-015-084 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1235 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ccccgagcctggcgtgctgc 303 |||||||||||||||||||| Sbjct: 654 ccccgagcctggcgtgctgc 673
>gb|AY885499.1| Uncultured sulfate-reducing bacterium clone TPB-16-268 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1231 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ccccgagcctggcgtgctgc 303 |||||||||||||||||||| Sbjct: 642 ccccgagcctggcgtgctgc 661
>gb|AY885497.1| Uncultured sulfate-reducing bacterium clone FW-003-371 dissimilatory sulfite reductase subunits A and B (dsrAB) gene, partial sequence Length = 1226 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ccccgagcctggcgtgctgc 303 |||||||||||||||||||| Sbjct: 628 ccccgagcctggcgtgctgc 647
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 cggcgtgcccgaccagtgcctcgccgcg 365 |||||||||| ||||| ||||||||||| Sbjct: 29496297 cggcgtgccctaccagcgcctcgccgcg 29496324 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgccgcggtcgccgagccgg 378 |||||||||||||||||||| Sbjct: 19661943 cgccgcggtcgccgagccgg 19661924 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 gcgtgctgcgcgccttcgcc 314 |||||||||||||||||||| Sbjct: 10840483 gcgtgctgcgcgccttcgcc 10840464 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 871148 ctccctccgccccgctccgc 871129
>gb|AY166598.1| Burkholderia cepacia genomovar III strain J2315 type III secretion gene cluster, complete sequence Length = 15231 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 cctgccgccgccgcaggccgcgct 238 |||||||| ||||||||||||||| Sbjct: 147 cctgccgctgccgcaggccgcgct 170
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 cggcgtgcccgaccagtgcctcgccgcg 365 |||||||||| ||||| ||||||||||| Sbjct: 24523072 cggcgtgccctaccagcgcctcgccgcg 24523099 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 21159005 ctccctccgccccgctccgc 21158986 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 8551566 ctccctccgccccgctccgc 8551547
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 21586551 ctccctccgccccgctccgc 21586532
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tctcgccgcgccggcgccgg 174 |||||||||||||||||||| Sbjct: 4324617 tctcgccgcgccggcgccgg 4324636
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ccctccctccctccgccccg 81 |||||||||||||||||||| Sbjct: 38023246 ccctccctccctccgccccg 38023265 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctcacctcgccctccctccc 72 |||||||||||||||||||| Sbjct: 25776531 ctcacctcgccctccctccc 25776512 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tcgccgcgccggcgccggtg 176 |||||||||||||||||||| Sbjct: 12280468 tcgccgcgccggcgccggtg 12280487
>emb|AL606992.3|OSJN00116 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L13, complete sequence Length = 143386 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 91809 ctccctccgccccgctccgc 91790
>gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone BACR02G16, complete sequence Length = 177480 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccctccctccgccccgctcc 85 |||||||||||||||||||| Sbjct: 88234 ccctccctccgccccgctcc 88215
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 62677 ctccctccgccccgctccgc 62696
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11, complete sequence Length = 126040 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 91554 ctccctccgccccgctccgc 91535
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ggtgtcgctgctgggcatca 192 |||||||||||||||||||| Sbjct: 1257992 ggtgtcgctgctgggcatca 1258011
>gb|AE004578.1| Pseudomonas aeruginosa PAO1, section 139 of 529 of the complete genome Length = 11684 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ctcgccgcgccggcgccggt 175 |||||||||||||||||||| Sbjct: 6216 ctcgccgcgccggcgccggt 6197
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 cgccgcgccggcgccggtgt 177 |||||||||||||||||||| Sbjct: 3191813 cgccgcgccggcgccggtgt 3191832 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cgcgctgcccctgctccagg 252 |||||||||||||||||||| Sbjct: 2263969 cgcgctgcccctgctccagg 2263988 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 cgccgagccggccggcgccg 387 |||||||||||||||||||| Sbjct: 1109803 cgccgagccggccggcgccg 1109784
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ccctccctccctccgccccg 81 |||||||||||||||||||| Sbjct: 104190 ccctccctccctccgccccg 104209
>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0696F12 Length = 165227 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 80366 ctccctccgccccgctccgc 80347
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cgccggcgccggtgtcgctg 182 |||||||||||||||||||| Sbjct: 6590690 cgccggcgccggtgtcgctg 6590671
>dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510C12 Length = 177049 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctcacctcgccctccctccc 72 |||||||||||||||||||| Sbjct: 16455 ctcacctcgccctccctccc 16436
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gccctccctccctccgcccc 80 |||||||||||||||||||| Sbjct: 151257 gccctccctccctccgcccc 151238
>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039G05 Length = 138429 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctcacctcgccctccctccc 72 |||||||||||||||||||| Sbjct: 78995 ctcacctcgccctccctccc 78976
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gccctccctccctccgcccc 80 |||||||||||||||||||| Sbjct: 43339 gccctccctccctccgcccc 43320
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tctcgccgcgccggcgccgg 174 |||||||||||||||||||| Sbjct: 8181 tctcgccgcgccggcgccgg 8200
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0504A05 Length = 148360 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tctcgccgcgccggcgccgg 174 |||||||||||||||||||| Sbjct: 141431 tctcgccgcgccggcgccgg 141450
>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427B07 Length = 172058 Score = 40.1 bits (20), Expect = 5.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 185 gggcatcaactacggccgcgtggggaacaacctgcc 220 |||||||||||||| ||| || || ||||||||||| Sbjct: 28089 gggcatcaactacgaccgtgtcggcaacaacctgcc 28124
>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0426D06 Length = 162173 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tcgccgcgccggcgccggtg 176 |||||||||||||||||||| Sbjct: 105094 tcgccgcgccggcgccggtg 105113
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0669H03 Length = 167878 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctccctccgccccgctccgc 87 |||||||||||||||||||| Sbjct: 84034 ctccctccgccccgctccgc 84015
>dbj|AP004230.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ2013_G04 Length = 73667 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 cggcgtgcccgaccagtgcctcgccgcg 365 |||||||||| ||||| ||||||||||| Sbjct: 72882 cggcgtgccctaccagcgcctcgccgcg 72909
>dbj|AK121648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060D18, full insert sequence Length = 2204 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccctccctccctccgccccg 81 |||||||||||||||||||| Sbjct: 196 ccctccctccctccgccccg 177
>dbj|AP005807.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018H10 Length = 135879 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 cggcgtgcccgaccagtgcctcgccgcg 365 |||||||||| ||||| ||||||||||| Sbjct: 16366 cggcgtgccctaccagcgcctcgccgcg 16393
>dbj|AK101501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C14, full insert sequence Length = 1854 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgccgcggtcgccgagccgg 378 |||||||||||||||||||| Sbjct: 1217 cgccgcggtcgccgagccgg 1198
>dbj|AK099968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127I09, full insert sequence Length = 3370 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 cggcgtgcccgaccagtgcctcgccgcg 365 |||||||||| ||||| ||||||||||| Sbjct: 729 cggcgtgccctaccagcgcctcgccgcg 756
>dbj|AK072910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148N24, full insert sequence Length = 2800 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccctccctccctccgccccg 81 |||||||||||||||||||| Sbjct: 153 ccctccctccctccgccccg 134
>dbj|AK073144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020E06, full insert sequence Length = 2202 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccctccctccctccgccccg 81 |||||||||||||||||||| Sbjct: 193 ccctccctccctccgccccg 174
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 cgagcctggcgtgctgcgcg 306 |||||||||||||||||||| Sbjct: 1007706 cgagcctggcgtgctgcgcg 1007725
>dbj|AK065101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N02, full insert sequence Length = 2155 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccctccctccctccgccccg 81 |||||||||||||||||||| Sbjct: 196 ccctccctccctccgccccg 177
>gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 116 of 118 of the complete sequence Length = 225974 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccctccctccgccccgctcc 85 |||||||||||||||||||| Sbjct: 70501 ccctccctccgccccgctcc 70482
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cgccggcgccggtgtcgctgctgg 186 ||||||||||||||| |||||||| Sbjct: 2089828 cgccggcgccggtgtagctgctgg 2089805
>emb|AJ628149.4| Micromonospora echinospora genomic region of the gentamicin biosynthesis gene cluster, strain DSM 43036 Length = 84222 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggtcgccgagccggccggcg 384 |||||||||||||||||||| Sbjct: 53941 ggtcgccgagccggccggcg 53960
>emb|AJ628421.2| Micromonospora olivasterospora fortimicin biosynthesis gene cluster, strain DSM 43868 Length = 47238 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggtcgccgagccggccggcg 384 |||||||||||||||||||| Sbjct: 6920 ggtcgccgagccggccggcg 6901
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgccgcggtcgccgagccgg 378 |||||||||||||||||||| Sbjct: 112669 cgccgcggtcgccgagccgg 112650
>gb|AC166350.4| Mus musculus BAC clone RP24-220P10 from chromosome 17, complete sequence Length = 156954 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 ccctccctccctccgccccgctcc 85 ||||||||||||||| |||||||| Sbjct: 51382 ccctccctccctccgtcccgctcc 51405
>gb|M73704.1|HUMPHIDYIN Human phosphatidylinositol transfer protein mRNA, complete cds Length = 1368 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 83 cctcgccgcggtcgccgcgccggc 60
>dbj|D30036.1|HUMPITPA Human mRNA for phosphatidylinositol transfer protein (PI-TPalpha), complete cds Length = 2308 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 356 cctcgccgcggtcgccgagccggc 379 ||||||||||||||||| |||||| Sbjct: 75 cctcgccgcggtcgccgcgccggc 52
>emb|AL732316.10| Mouse DNA sequence from clone RP23-367I7 on chromosome 2, complete sequence Length = 150707 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctccctccgccccgctcc 85 |||||||||||||||||||| Sbjct: 82519 ccctccctccgccccgctcc 82538 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,506,036 Number of Sequences: 3902068 Number of extensions: 3506036 Number of successful extensions: 295990 Number of sequences better than 10.0: 144 Number of HSP's better than 10.0 without gapping: 159 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 289402 Number of HSP's gapped (non-prelim): 6589 length of query: 388 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 366 effective length of database: 17,147,199,772 effective search space: 6275875116552 effective search space used: 6275875116552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
