ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast18a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473870.1| Oryza sativa (japonica cultivar-group), predic... 121 2e-24
2emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 121 2e-24
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
6dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
7dbj|AK106782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
8ref|NM_185024.1| Oryza sativa (japonica cultivar-group), mRNA 105 1e-19
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 105 1e-19
10gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 105 1e-19
11gb|AC091123.4| Oryza sativa chromosome 3 BAC OSJNBb0093E13 genom... 105 1e-19
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
13dbj|AK101921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
14gb|BT024102.1| Zea mays clone EL01N0521G07 mRNA sequence 46 0.081
15emb|AJ843080.1| Streptomyces fradiae neomycin biosynthetic gene ... 44 0.32
16dbj|AB211959.1| Streptomyces fradiae orf6, neoU, neoT, neoS, neo... 44 0.32
17emb|AJ629247.1| Streptomyces fradiae neomycin biosynthesis gene ... 44 0.32
18ref|XM_450781.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
19gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 1.3
20gb|BC039829.1| Homo sapiens integrator complex subunit 6, transc... 42 1.3
21gb|BC013358.2| Homo sapiens integrator complex subunit 6, mRNA (... 42 1.3
22gb|BC094745.1| Homo sapiens integrator complex subunit 6, mRNA (... 42 1.3
23emb|AL354820.18| Human DNA sequence from clone RP11-550E22 on ch... 42 1.3
24gb|BC032386.1| Homo sapiens integrator complex subunit 6, mRNA (... 42 1.3
25gb|BC018725.1| Homo sapiens integrator complex subunit 6, mRNA (... 42 1.3
26ref|NM_001039938.1| Homo sapiens integrator complex subunit 6 (I... 42 1.3
27ref|NM_012141.2| Homo sapiens integrator complex subunit 6 (INTS... 42 1.3
28emb|CR607963.1| full-length cDNA clone CS0DI062YD13 of Placenta ... 42 1.3
29ref|XM_688910.1| PREDICTED: Danio rerio similar to aggrecan 1 (L... 42 1.3
30tpg|BK005730.1| TPA: TPA_exp: Homo sapiens integrator complex su... 42 1.3
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
32dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.3
33dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
34emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.3
35gb|AF097645.1|AF097645 Homo sapiens candidate tumor suppressor p... 42 1.3
36gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.3
37gb|AC168214.7| Mus musculus chromosome 15, clone RP24-373K19, co... 40 5.0
38gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, com... 40 5.0
39ref|NM_186147.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
40gb|AC101651.6| Mus musculus chromosome 18, clone RP23-42D12, com... 40 5.0
41ref|XM_874399.1| PREDICTED: Bos taurus similar to dynein, cytopl... 40 5.0
42ref|XM_617931.2| PREDICTED: Bos taurus similar to dynein, cytopl... 40 5.0
43ref|XM_874239.1| PREDICTED: Bos taurus similar to dynein, cytopl... 40 5.0
44ref|XM_864692.1| PREDICTED: Bos taurus similar to dynein, cytopl... 40 5.0
45gb|AC115787.6| Mus musculus chromosome 16, clone RP23-212P1, com... 40 5.0
46gb|AE009422.1| Agrobacterium tumefaciens str. C58 Ti plasmid, se... 40 5.0
47gb|AE007930.1| Agrobacterium tumefaciens str. C58 plasmid Ti, se... 40 5.0
48ref|XM_990546.1| PREDICTED: Mus musculus collagen, type XXII, al... 40 5.0
49ref|XM_907370.2| PREDICTED: Mus musculus collagen, type XXII, al... 40 5.0
50ref|XM_981889.1| PREDICTED: Mus musculus collagen, type XXII, al... 40 5.0
51gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome... 40 5.0
52ref|XM_747354.1| Aspergillus fumigatus Af293 adenylylsulfate kin... 40 5.0
53gb|AC121774.3| Mus musculus BAC clone RP23-350E1 from chromosome... 40 5.0
54gb|AC125234.4| Mus musculus BAC clone RP23-14K16 from 13, comple... 40 5.0
55gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.0
56emb|AL138691.15| Human DNA sequence from clone RP11-310D8 on chr... 40 5.0
57emb|AL031848.11|HS202O8 Human DNA sequence from clone RP1-202O8 ... 40 5.0
58gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.0
59gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.0
60dbj|AB016260.1| Agrobacterium tumefaciens plasmid pTi-SAKURA, co... 40 5.0
61dbj|AK148779.1| Mus musculus 2 days neonate sympathetic ganglion... 40 5.0
62emb|CR378129.1| Pinus pinaster SSR, clone PPB2H09 40 5.0
63dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: R... 40 5.0
64dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: R... 40 5.0
65ref|XM_243609.3| PREDICTED: Rattus norvegicus collagen, type XXI... 40 5.0
66dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
67dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
68emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.0
69gb|AF057718.1|AF057718 Agrobacterium tumefaciens plasmid pTiC58 ... 40 5.0
70gb|AC137692.4| Mus musculus BAC clone RP24-323P9 from 13, comple... 40 5.0
71gb|AC123689.8| Mus musculus chromosome 15, clone RP23-321P10, co... 40 5.0
72emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on ch... 40 5.0
73gb|AC168312.8| Mus musculus chromosome 15, clone RP24-288F21, co... 40 5.0 
>ref|XM_473870.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1026

 Score =  121 bits (61), Expect = 2e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                       
Query: 305 gaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgagaa 364
           |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 123 gaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgagaa 182

                        
Query: 365 cgccctcctcgag 377
           |||||||||||||
Sbjct: 183 cgccctcctcgag 195



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 217 cctccttcgccggggcctcgccgccgtctccctccccgatcgg 259
           ||||||||||||||||||||||||| || || || ||||||||
Sbjct: 35  cctccttcgccggggcctcgccgccatcgccttctccgatcgg 77
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score =  121 bits (61), Expect = 2e-24
 Identities = 70/73 (95%)
 Strand = Plus / Minus

                                                                          
Query: 305    gaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgagaa 364
              |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 118605 gaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgagaa 118546

                           
Query: 365    cgccctcctcgag 377
              |||||||||||||
Sbjct: 118545 cgccctcctcgag 118533



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 217    cctccttcgccggggcctcgccgccgtctccctccccgatcgg 259
              ||||||||||||||||||||||||| || || || ||||||||
Sbjct: 118693 cctccttcgccggggcctcgccgccatcgccttctccgatcgg 118651
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  121 bits (61), Expect = 2e-24
 Identities = 70/73 (95%)
 Strand = Plus / Minus

                                                                            
Query: 305      gaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgagaa 364
                |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 31136524 gaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgagaa 31136465

                             
Query: 365      cgccctcctcgag 377
                |||||||||||||
Sbjct: 31136464 cgccctcctcgag 31136452



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 217      cctccttcgccggggcctcgccgccgtctccctccccgatcgg 259
                ||||||||||||||||||||||||| || || || ||||||||
Sbjct: 31136612 cctccttcgccggggcctcgccgccatcgccttctccgatcgg 31136570
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  121 bits (61), Expect = 2e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                            
Query: 305      gaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgagaa 364
                |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 22606409 gaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgagaa 22606468

                             
Query: 365      cgccctcctcgag 377
                |||||||||||||
Sbjct: 22606469 cgccctcctcgag 22606481



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 217      cctccttcgccggggcctcgccgccgtctccctccccgatcgg 259
                ||||||||||||||||||||||||| || || || ||||||||
Sbjct: 22606321 cctccttcgccggggcctcgccgccatcgccttctccgatcgg 22606363



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    cctcgccgccgtctccctcc 251
              ||||||||||||||||||||
Sbjct: 424453 cctcgccgccgtctccctcc 424472
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>dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1773_H01
          Length = 146543

 Score =  121 bits (61), Expect = 2e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                         
Query: 305   gaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgagaa 364
             |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 24307 gaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgagaa 24366

                          
Query: 365   cgccctcctcgag 377
             |||||||||||||
Sbjct: 24367 cgccctcctcgag 24379



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 217   cctccttcgccggggcctcgccgccgtctccctccccgatcgg 259
             ||||||||||||||||||||||||| || || || ||||||||
Sbjct: 24219 cctccttcgccggggcctcgccgccatcgccttctccgatcgg 24261
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>dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1112_E08
          Length = 119926

 Score =  121 bits (61), Expect = 2e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                         
Query: 305   gaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgagaa 364
             |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 86791 gaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgagaa 86850

                          
Query: 365   cgccctcctcgag 377
             |||||||||||||
Sbjct: 86851 cgccctcctcgag 86863



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 217   cctccttcgccggggcctcgccgccgtctccctccccgatcgg 259
             ||||||||||||||||||||||||| || || || ||||||||
Sbjct: 86703 cctccttcgccggggcctcgccgccatcgccttctccgatcgg 86745
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>dbj|AK106782.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H08, full
           insert sequence
          Length = 1527

 Score =  121 bits (61), Expect = 2e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                       
Query: 305 gaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgagaa 364
           |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 369 gaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgagaa 428

                        
Query: 365 cgccctcctcgag 377
           |||||||||||||
Sbjct: 429 cgccctcctcgag 441



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 217 cctccttcgccggggcctcgccgccgtctccctccccgatcgg 259
           ||||||||||||||||||||||||| || || || ||||||||
Sbjct: 281 cctccttcgccggggcctcgccgccatcgccttctccgatcgg 323
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>ref|NM_185024.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1293

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                       
Query: 304 ggaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgaga 363
           ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||||
Sbjct: 139 ggaagatggcgtccgcggagcagctcgtgctcgacctctgcgaccccgagctgcgggaga 198

                        
Query: 364 acgccctcctcga 376
           |||||||||||||
Sbjct: 199 acgccctcctcga 211
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                            
Query: 304      ggaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgaga 363
                ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||||
Sbjct: 32271960 ggaagatggcgtccgcggagcagctcgtgctcgacctctgcgaccccgagctgcgggaga 32271901

                             
Query: 364      acgccctcctcga 376
                |||||||||||||
Sbjct: 32271900 acgccctcctcga 32271888
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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 304  ggaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgaga 363
            ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||||
Sbjct: 5729 ggaagatggcgtccgcggagcagctcgtgctcgacctctgcgaccccgagctgcgggaga 5670

                         
Query: 364  acgccctcctcga 376
            |||||||||||||
Sbjct: 5669 acgccctcctcga 5657
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>gb|AC091123.4| Oryza sativa chromosome 3 BAC OSJNBb0093E13 genomic sequence, complete
              sequence
          Length = 129778

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                          
Query: 304    ggaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgaga 363
              ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||||
Sbjct: 123634 ggaagatggcgtccgcggagcagctcgtgctcgacctctgcgaccccgagctgcgggaga 123575

                           
Query: 364    acgccctcctcga 376
              |||||||||||||
Sbjct: 123574 acgccctcctcga 123562
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                            
Query: 304      ggaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgaga 363
                ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||||
Sbjct: 32362472 ggaagatggcgtccgcggagcagctcgtgctcgacctctgcgaccccgagctgcgggaga 32362413

                             
Query: 364      acgccctcctcga 376
                |||||||||||||
Sbjct: 32362412 acgccctcctcga 32362400
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>dbj|AK101921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071K05, full
           insert sequence
          Length = 1747

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                       
Query: 304 ggaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgaga 363
           ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||||
Sbjct: 186 ggaagatggcgtccgcggagcagctcgtgctcgacctctgcgaccccgagctgcgggaga 245

                        
Query: 364 acgccctcctcga 376
           |||||||||||||
Sbjct: 246 acgccctcctcga 258
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>gb|BT024102.1| Zea mays clone EL01N0521G07 mRNA sequence
          Length = 1648

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                       
Query: 305 gaagatggcgtcggcggagcagctggtgctcgacctgtgcgaccgcgagctgcgcgagaa 364
           |||||||||||| ||||| ||||||||  | || || |||||||  || |||||||||||
Sbjct: 291 gaagatggcgtccgcggaacagctggtcttggaactctgcgaccctgaactgcgcgagaa 350

              
Query: 365 cgc 367
           |||
Sbjct: 351 cgc 353



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 218 ctccttcgccggggcctcgccgccgtctccctccccgat 256
           ||||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 204 ctccttcgcaggggcctcgcctccgtccccctctccgat 242
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>emb|AJ843080.1| Streptomyces fradiae neomycin biosynthetic gene cluster, strain MCIMB
             8233
          Length = 30837

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 330   gtgctcgacctgtgcgaccgcg 351
             ||||||||||||||||||||||
Sbjct: 29106 gtgctcgacctgtgcgaccgcg 29085
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>dbj|AB211959.1| Streptomyces fradiae orf6, neoU, neoT, neoS, neoR, neoA, neoB, neoC,
             neoD, neoE, neoF, neoG, neoH, neoI, neoJ, neoK, neoL,
             neoM, neoN, neoO, neoP, neoQ, orf1, orf2, orf3, orf4, orf5
             genes, complete and partial cds
          Length = 39237

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 330   gtgctcgacctgtgcgaccgcg 351
             ||||||||||||||||||||||
Sbjct: 32921 gtgctcgacctgtgcgaccgcg 32900
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>emb|AJ629247.1| Streptomyces fradiae neomycin biosynthesis gene cluster, strain DSM
             40063
          Length = 50466

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 330   gtgctcgacctgtgcgaccgcg 351
             ||||||||||||||||||||||
Sbjct: 37655 gtgctcgacctgtgcgaccgcg 37634
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>ref|XM_450781.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 214 cctcctccttcgccggggcctcgccgccgtctccctc 250
           ||||||||  ||||| ||||||||||||||| |||||
Sbjct: 80  cctcctccgccgccgcggcctcgccgccgtcaccctc 116
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 344    cgaccgcgagctgcgcgagaacgcc 368
              ||||||||||||||||||| |||||
Sbjct: 666125 cgaccgcgagctgcgcgaggacgcc 666101
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>gb|BC039829.1| Homo sapiens integrator complex subunit 6, transcript variant 1,
           mRNA (cDNA clone MGC:48751 IMAGE:5736353), complete cds
          Length = 3692

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 433 ggtggaggcgccggtggcggc 413
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>gb|BC013358.2| Homo sapiens integrator complex subunit 6, mRNA (cDNA clone
           IMAGE:3630405), partial cds
          Length = 2975

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 437 ggtggaggcgccggtggcggc 417
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>gb|BC094745.1| Homo sapiens integrator complex subunit 6, mRNA (cDNA clone
           IMAGE:5272649), with apparent retained intron
          Length = 3768

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 211 ggtggaggcgccggtggcggc 191
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>emb|AL354820.18| Human DNA sequence from clone RP11-550E22 on chromosome 13 Contains
             part of a novel gene, the 5' end of the DDX26 gene for
             DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26 (HDB,
             DBI-1, DICE1, NOTCHL2,Notchl2, DKFZP434B105), part of a
             novel gene, a ribosomal protein S4, X-linked (RPS4X)
             pseudogene, a small nuclear ribonucleoprotein polypeptide
             G pseudogene and a CpG island, complete sequence
          Length = 165987

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 258   ggtggaggcgccggtggcggc 278
             |||||||||||||||||||||
Sbjct: 42092 ggtggaggcgccggtggcggc 42112
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>gb|BC032386.1| Homo sapiens integrator complex subunit 6, mRNA (cDNA clone
           IMAGE:5176314), with apparent retained intron
          Length = 2412

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 439 ggtggaggcgccggtggcggc 419
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>gb|BC018725.1| Homo sapiens integrator complex subunit 6, mRNA (cDNA clone
           IMAGE:2820536), with apparent retained intron
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 435 ggtggaggcgccggtggcggc 415
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>ref|NM_001039938.1| Homo sapiens integrator complex subunit 6 (INTS6), transcript
           variant 3, mRNA
          Length = 2494

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 559 ggtggaggcgccggtggcggc 539
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>ref|NM_012141.2| Homo sapiens integrator complex subunit 6 (INTS6), transcript
           variant 1, mRNA
          Length = 7465

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 559 ggtggaggcgccggtggcggc 539
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>emb|CR607963.1| full-length cDNA clone CS0DI062YD13 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1594

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 440 ggtggaggcgccggtggcggc 420
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>ref|XM_688910.1| PREDICTED: Danio rerio similar to aggrecan 1 (LOC565644), mRNA
          Length = 1866

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 308 gatggcgtcggcggagcagct 328
           |||||||||||||||||||||
Sbjct: 225 gatggcgtcggcggagcagct 245
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>tpg|BK005730.1| TPA: TPA_exp: Homo sapiens integrator complex subunit 6 mRNA,
           complete cds
          Length = 3690

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 421 ggtggaggcgccggtggcggc 401
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 214      cctcctccttcgccggggcctcgccgccgtctccctc 250
                ||||||||  ||||| ||||||||||||||| |||||
Sbjct: 12724384 cctcctccgccgccgcggcctcgccgccgtcaccctc 12724348
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 327     ctggtgctcgacctgtgcgaccgcgagctgcgcgagaacgc 367
               ||||||| ||| ||| |||| ||||||| ||||||||||||
Sbjct: 4182974 ctggtgcgcgaactgggcgagcgcgagcggcgcgagaacgc 4182934
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>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0027G10
          Length = 184759

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 214   cctcctccttcgccggggcctcgccgccgtctccctc 250
             ||||||||  ||||| ||||||||||||||| |||||
Sbjct: 32161 cctcctccgccgccgcggcctcgccgccgtcaccctc 32125
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 344    cgaccgcgagctgcgcgagaa 364
              |||||||||||||||||||||
Sbjct: 563184 cgaccgcgagctgcgcgagaa 563164
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>gb|AF097645.1|AF097645 Homo sapiens candidate tumor suppressor protein DICE1 mRNA,
           complete cds
          Length = 3690

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 ggtggaggcgccggtggcggc 278
           |||||||||||||||||||||
Sbjct: 421 ggtggaggcgccggtggcggc 401
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 321     gagcagctggtgctcgacctg 341
               |||||||||||||||||||||
Sbjct: 4281165 gagcagctggtgctcgacctg 4281145
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>gb|AC168214.7| Mus musculus chromosome 15, clone RP24-373K19, complete sequence
          Length = 166835

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 259   gtggaggcgccggtggcggctctg 282
             |||||||||| |||||||||||||
Sbjct: 89173 gtggaggcgcaggtggcggctctg 89150
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>gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, complete sequence
          Length = 172282

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   gggcctcgccgccgtctccctccc 252
             |||| |||||||||||||||||||
Sbjct: 24468 gggcttcgccgccgtctccctccc 24445
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>ref|NM_186147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3033

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 232 cctcgccgccgtctccctcc 251
           ||||||||||||||||||||
Sbjct: 357 cctcgccgccgtctccctcc 376
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>gb|AC101651.6| Mus musculus chromosome 18, clone RP23-42D12, complete sequence
          Length = 198070

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ggccaccggcgcggctgctt 93
             ||||||||||||||||||||
Sbjct: 27945 ggccaccggcgcggctgctt 27926
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>ref|XM_874399.1| PREDICTED: Bos taurus similar to dynein, cytoplasmic, heavy
           polypeptide 1, transcript variant 7 (LOC537748), mRNA
          Length = 14724

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 gccggggcctcgccgccgtc 244
           ||||||||||||||||||||
Sbjct: 698 gccggggcctcgccgccgtc 679
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>ref|XM_617931.2| PREDICTED: Bos taurus similar to dynein, cytoplasmic, heavy
           polypeptide 1, transcript variant 1 (LOC537748), mRNA
          Length = 14735

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 gccggggcctcgccgccgtc 244
           ||||||||||||||||||||
Sbjct: 698 gccggggcctcgccgccgtc 679
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>ref|XM_874239.1| PREDICTED: Bos taurus similar to dynein, cytoplasmic, heavy
           polypeptide 1, transcript variant 6 (LOC537748), mRNA
          Length = 12668

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 gccggggcctcgccgccgtc 244
           ||||||||||||||||||||
Sbjct: 698 gccggggcctcgccgccgtc 679
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>ref|XM_864692.1| PREDICTED: Bos taurus similar to dynein, cytoplasmic, heavy
           polypeptide 1, transcript variant 3 (LOC537748), mRNA
          Length = 14739

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 gccggggcctcgccgccgtc 244
           ||||||||||||||||||||
Sbjct: 698 gccggggcctcgccgccgtc 679
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>gb|AC115787.6| Mus musculus chromosome 16, clone RP23-212P1, complete sequence
          Length = 209108

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    cttcccccctctccgtccctctcc 114
             |||||||||||||| |||||||||
Sbjct: 74881 cttcccccctctccctccctctcc 74904
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>gb|AE009422.1| Agrobacterium tumefaciens str. C58 Ti plasmid, section 5 of 21 of the
            complete sequence
          Length = 11903

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 264  ggcgccggtggcggctctgcctcg 287
            ||||||||||||||||| ||||||
Sbjct: 5580 ggcgccggtggcggctcggcctcg 5557
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>gb|AE007930.1| Agrobacterium tumefaciens str. C58 plasmid Ti, section 8 of 20 of the
            complete sequence
          Length = 11864

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 264  ggcgccggtggcggctctgcctcg 287
            ||||||||||||||||| ||||||
Sbjct: 5550 ggcgccggtggcggctcggcctcg 5527
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>ref|XM_990546.1| PREDICTED: Mus musculus collagen, type XXII, alpha 1, transcript
            variant 3 (Col22a1), mRNA
          Length = 6172

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 259  gtggaggcgccggtggcggctctg 282
            |||||||||| |||||||||||||
Sbjct: 1807 gtggaggcgcaggtggcggctctg 1784
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>ref|XM_907370.2| PREDICTED: Mus musculus collagen, type XXII, alpha 1, transcript
            variant 3 (Col22a1), mRNA
          Length = 6172

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 259  gtggaggcgccggtggcggctctg 282
            |||||||||| |||||||||||||
Sbjct: 1807 gtggaggcgcaggtggcggctctg 1784
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>ref|XM_981889.1| PREDICTED: Mus musculus collagen, type XXII, alpha 1, transcript
            variant 2 (Col22a1), mRNA
          Length = 6172

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 259  gtggaggcgccggtggcggctctg 282
            |||||||||| |||||||||||||
Sbjct: 1807 gtggaggcgcaggtggcggctctg 1784
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>gb|AC142257.4| Mus musculus BAC clone RP24-511I4 from chromosome 18, complete sequence
          Length = 140990

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ggccaccggcgcggctgctt 93
             ||||||||||||||||||||
Sbjct: 83933 ggccaccggcgcggctgctt 83914
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>ref|XM_747354.1| Aspergillus fumigatus Af293 adenylylsulfate kinase (Afu1g10820)
           partial mRNA
          Length = 636

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 gcggagcagctggtgctcga 337
           ||||||||||||||||||||
Sbjct: 153 gcggagcagctggtgctcga 134
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>gb|AC121774.3| Mus musculus BAC clone RP23-350E1 from chromosome 5, complete sequence
          Length = 191733

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 229    gggcctcgccgccgtctccctccc 252
              |||| |||||||||||||||||||
Sbjct: 162768 gggcttcgccgccgtctccctccc 162745
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>gb|AC125234.4| Mus musculus BAC clone RP23-14K16 from 13, complete sequence
          Length = 209715

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ccccctctccgtccctctcc 114
              ||||||||||||||||||||
Sbjct: 175045 ccccctctccgtccctctcc 175026
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     gcgcgagaacgccctcctcg 375
               ||||||||||||||||||||
Sbjct: 3879146 gcgcgagaacgccctcctcg 3879165
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>emb|AL138691.15| Human DNA sequence from clone RP11-310D8 on chromosome 13 Contains the
             SOX1 gene for SRY (sex determining region Y)-box 1 protein
             and 7 CpG islands, complete sequence
          Length = 147665

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cccctctccgtccctctccg 115
             ||||||||||||||||||||
Sbjct: 10367 cccctctccgtccctctccg 10348
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>emb|AL031848.11|HS202O8 Human DNA sequence from clone RP1-202O8 on chromosome 1p36.11-36.31
              Contains the 5' end of the gene for brain acyl-coA
              hydrolase (BACH), the gene for hairy and enhancer of split
              (Drosophila) homolog 2 (HES2), the 5' end of the ESPN gene
              for espin, a novel gene and four CpG islands, complete
              sequence
          Length = 143065

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    gcctgcagccttccctcccc 209
              ||||||||||||||||||||
Sbjct: 103161 gcctgcagccttccctcccc 103180
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 350     cgagctgcgcgagaacgccc 369
               ||||||||||||||||||||
Sbjct: 5311723 cgagctgcgcgagaacgccc 5311704
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     ttcgtcccgaagccgatcga 159
               ||||||||||||||||||||
Sbjct: 2406526 ttcgtcccgaagccgatcga 2406545
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>dbj|AB016260.1| Agrobacterium tumefaciens plasmid pTi-SAKURA, complete sequence
          Length = 206479

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 264   ggcgccggtggcggctctgcctcg 287
             ||||||||||||||||| ||||||
Sbjct: 11495 ggcgccggtggcggctcggcctcg 11472
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>dbj|AK148779.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
           full-length enriched library, clone:7120445H23
           product:peroxisomal biogenesis factor 14, full insert
           sequence
          Length = 3819

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 303 aggaagatggcgtcggcggagcag 326
           ||||||||||||||| ||||||||
Sbjct: 4   aggaagatggcgtcgtcggagcag 27
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>emb|CR378129.1| Pinus pinaster SSR, clone PPB2H09
          Length = 658

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 91  cttcccccctctccgtccctctcc 114
           |||||||||||||| |||||||||
Sbjct: 220 cttcccccctctccctccctctcc 197
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>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete
             sequence
          Length = 255195

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 303   aggaagatggcgtcggcggagcag 326
             ||||||||||||||| ||||||||
Sbjct: 16435 aggaagatggcgtcgtcggagcag 16458
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>dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-266A3, complete
              sequence
          Length = 199759

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 303    aggaagatggcgtcggcggagcag 326
              ||||||||||||||| ||||||||
Sbjct: 135006 aggaagatggcgtcgtcggagcag 135029
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>ref|XM_243609.3| PREDICTED: Rattus norvegicus collagen, type XXII, alpha 1 (predicted)
            (Col22a1_predicted), mRNA
          Length = 2583

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 259  gtggaggcgccggtggcggctctg 282
            |||||||||| |||||||||||||
Sbjct: 2254 gtggaggcgcaggtggcggctctg 2231
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   cctcgccgccgtctccctcc 251
             ||||||||||||||||||||
Sbjct: 26617 cctcgccgccgtctccctcc 26636
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>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full
           insert sequence
          Length = 3392

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 232 cctcgccgccgtctccctcc 251
           ||||||||||||||||||||
Sbjct: 483 cctcgccgccgtctccctcc 502
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 350     cgagctgcgcgagaacgccc 369
               ||||||||||||||||||||
Sbjct: 1363543 cgagctgcgcgagaacgccc 1363562
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>gb|AF057718.1|AF057718 Agrobacterium tumefaciens plasmid pTiC58 autoinducer synthase (traI)
            gene, complete cds; mating pair formation locus, complete
            sequence; and unknown gene
          Length = 11003

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 264  ggcgccggtggcggctctgcctcg 287
            ||||||||||||||||| ||||||
Sbjct: 6274 ggcgccggtggcggctcggcctcg 6297
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>gb|AC137692.4| Mus musculus BAC clone RP24-323P9 from 13, complete sequence
          Length = 180677

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     ccccctctccgtccctctcc 114
              ||||||||||||||||||||
Sbjct: 111654 ccccctctccgtccctctcc 111673
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>gb|AC123689.8| Mus musculus chromosome 15, clone RP23-321P10, complete sequence
          Length = 218071

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 259   gtggaggcgccggtggcggctctg 282
             |||||||||| |||||||||||||
Sbjct: 33218 gtggaggcgcaggtggcggctctg 33195
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>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete
              sequence
          Length = 173824

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 303    aggaagatggcgtcggcggagcag 326
              ||||||||||||||| ||||||||
Sbjct: 151555 aggaagatggcgtcgtcggagcag 151532
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>gb|AC168312.8| Mus musculus chromosome 15, clone RP24-288F21, complete sequence
          Length = 167239

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 259   gtggaggcgccggtggcggctctg 282
             |||||||||| |||||||||||||
Sbjct: 34403 gtggaggcgcaggtggcggctctg 34426


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,183,610
Number of Sequences: 3902068
Number of extensions: 2183610
Number of successful extensions: 49105
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48118
Number of HSP's gapped (non-prelim): 987
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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