Clone Information

BLAST Search Result

Clone Name	bast17h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK065531.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	236	4e-59
2	ref\|XM_464852.1\| Oryza sativa (japonica cultivar-group), mRNA	196	4e-47
3	ref\|XM_506764.1\| PREDICTED Oryza sativa (japonica cultivar-group...	196	4e-47
4	gb\|AF139211.2\| Oryza sativa pre-mRNA splicing factor mRNA, compl...	196	4e-47
5	dbj\|AK099051.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	196	4e-47
6	dbj\|AK062577.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	196	4e-47
7	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	163	5e-37
8	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	163	5e-37
9	emb\|AL772425.7\|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396...	163	5e-37
10	dbj\|AB110200.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	157	3e-35
11	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	149	8e-33
12	dbj\|AP005510.3\| Oryza sativa (japonica cultivar-group) genomic D...	149	8e-33
13	dbj\|AP004018.3\| Oryza sativa (japonica cultivar-group) genomic D...	149	8e-33
14	gb\|AY105970.1\| Zea mays PCO109569 mRNA sequence	147	3e-32
15	gb\|BT016700.1\| Zea mays clone Contig533 mRNA sequence	137	3e-29
16	gb\|AC095015.1\| Drosophila melanogaster, chromosome 3R, region 84...	42	1.4
17	gb\|AE001572.2\| Drosophila melanogaster Antennapedia complex (ANT...	42	1.4
18	gb\|AE003673.3\| Drosophila melanogaster chromosome 3R, section 11...	42	1.4
19	gb\|AC002513.1\|AC002513 Drosophila melanogaster (P1 DS08322 (D15)...	42	1.4
20	gb\|AY426813.1\| Parryella filifolia internal transcribed spacer 1...	40	5.4
21	gb\|AY426803.1\| Errazurizia rotundata internal transcribed spacer...	40	5.4
22	gb\|AY426775.1\| Amorpha georgiana internal transcribed spacer 1, ...	40	5.4
23	gb\|AY426774.1\| Amorpha fruticosa internal transcribed spacer 1, ...	40	5.4
24	gb\|AY426773.1\| Amorpha canescens internal transcribed spacer 1, ...	40	5.4
25	gb\|AY426771.1\| Amorpha apiculata internal transcribed spacer 1, ...	40	5.4
26	gb\|DQ178997.1\| Streptomyces clavuligerus glyceraldehyde-3-phosph...	40	5.4
27	gb\|AY186756.1\| Arabidopsis lyrata S-related kinase 9 gene, exon ...	40	5.4
28	gb\|AF156658.1\|AF156658 Ambystoma mexicanum MHC class I heavy cha...	40	5.4
29	gb\|AF156657.1\|AF156657 Ambystoma mexicanum MHC class I heavy cha...	40	5.4
30	gb\|AF156656.1\|AF156656 Ambystoma mexicanum MHC class I heavy cha...	40	5.4
31	gb\|U59890.1\|AFU59890 Amorpha fruticosa 5.8S ribosomal RNA gene a...	40	5.4
32	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.4
33	gb\|AC016689.4\| Homo sapiens BAC clone RP11-81H20 from 2, complet...	40	5.4
34	dbj\|AP006533.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.4
35	dbj\|AP007223.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.4
36	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	40	5.4
37	gb\|AY108472.1\| Zea mays PCO119082 mRNA sequence	40	5.4
38	gb\|U83138.1\|AMU83138 Ambystoma mexicanum MHC class IA alpha chai...	40	5.4
39	gb\|AC140244.3\| Mus musculus BAC clone RP24-285J23 from 14, compl...	40	5.4

>dbj|AK065531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034H02, full
           insert sequence
          Length = 1250

 Score =  236 bits (119), Expect = 4e-59
 Identities = 182/201 (90%), Gaps = 4/201 (1%)
 Strand = Plus / Plus

                                                                       
Query: 202 cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
           ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||   |
Sbjct: 111 cgcagtccccctaggaggggctatggtggcagaggaagaagtccccctaggagggg---a 167

                                                                       
Query: 262 tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
           ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 168 tatggaggacggagggagcagggttctggaagtctcttggtccgcaacatcccattaagc 227

                                                                       
Query: 322 gccagagcggaggatctccgtgttccttttg-aagggttggtcctgttagggatgtttac 380
             ||||| ||||||||| || |||||||||| |||| ||||||||||| |||||||||||
Sbjct: 228 tgcagaggggaggatcttcgagttccttttgaaaggtttggtcctgttcgggatgtttac 287

                                
Query: 381 cttccgaaggattattacagc 401
           || || |||||||||||||||
Sbjct: 288 ctgccaaaggattattacagc 308



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 94  atgaggaggtacagccccccacaccgtagtcccccgaggaggggttatgg 143
           ||||||||||||||||| ||| | || |||||||| |||||||| |||||
Sbjct: 87  atgaggaggtacagcccaccatatcgcagtccccctaggaggggctatgg 136



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 158 atcgtagtcccccaaggaggggatatggtggcag 191
           |||| |||||||| |||||||| |||||||||||
Sbjct: 109 atcgcagtccccctaggaggggctatggtggcag 142

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>ref|XM_464852.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1176

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/197 (88%), Gaps = 4/197 (2%)
 Strand = Plus / Plus

                                                                       
Query: 202 cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 151 cgcagtccaccaaggaggggatatggtggcagaggaagaagtccccctaggagggg---a 207

                                                                       
Query: 262 tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
           ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||  |||||
Sbjct: 208 tatggaggacggaaggaacagggttctggcagtctcctggtccgcaacatccctttaagc 267

                                                                       
Query: 322 gccagagcggaggatctccgtgttccttttg-aagggttggtcctgttagggatgtttac 380
             |||||||||||||||  | |||||||||| |||| |||| |||||| | |||||||||
Sbjct: 268 tgcagagcggaggatcttagagttccttttgaaaggtttggacctgttcgagatgtttac 327

                            
Query: 381 cttccgaaggattatta 397
           || || |||||||||||
Sbjct: 328 ctgccaaaggattatta 344



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 158 atcgtagtcccccaaggaggggatatggtggcag 191
           |||| ||||| |||||||||||||||||||||||
Sbjct: 149 atcgcagtccaccaaggaggggatatggtggcag 182

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>ref|XM_506764.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1113_G05.32
           mRNA
          Length = 1265

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/197 (88%), Gaps = 4/197 (2%)
 Strand = Plus / Plus

                                                                       
Query: 202 cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 150 cgcagtccaccaaggaggggatatggtggcagaggaagaagtccccctaggagggg---a 206

                                                                       
Query: 262 tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
           ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||  |||||
Sbjct: 207 tatggaggacggaaggaacagggttctggcagtctcctggtccgcaacatccctttaagc 266

                                                                       
Query: 322 gccagagcggaggatctccgtgttccttttg-aagggttggtcctgttagggatgtttac 380
             |||||||||||||||  | |||||||||| |||| |||| |||||| | |||||||||
Sbjct: 267 tgcagagcggaggatcttagagttccttttgaaaggtttggacctgttcgagatgtttac 326

                            
Query: 381 cttccgaaggattatta 397
           || || |||||||||||
Sbjct: 327 ctgccaaaggattatta 343



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 158 atcgtagtcccccaaggaggggatatggtggcag 191
           |||| ||||| |||||||||||||||||||||||
Sbjct: 148 atcgcagtccaccaaggaggggatatggtggcag 181

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>gb|AF139211.2| Oryza sativa pre-mRNA splicing factor mRNA, complete cds
          Length = 1190

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/197 (88%), Gaps = 4/197 (2%)
 Strand = Plus / Plus

                                                                       
Query: 202 cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 151 cgcagtccaccaaggaggggatatggtggcagaggaagaagtccccctaggagggg---a 207

                                                                       
Query: 262 tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
           ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||  |||||
Sbjct: 208 tatggaggacggaaggaacagggttctggcagtctcctggtccgcaacatccctttaagc 267

                                                                       
Query: 322 gccagagcggaggatctccgtgttccttttg-aagggttggtcctgttagggatgtttac 380
             |||||||||||||||  | |||||||||| |||| |||| |||||| | |||||||||
Sbjct: 268 tgcagagcggaggatcttagagttccttttgaaaggtttggacctgttcgagatgtttac 327

                            
Query: 381 cttccgaaggattatta 397
           || || |||||||||||
Sbjct: 328 ctgccaaaggattatta 344



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 158 atcgtagtcccccaaggaggggatatggtggcag 191
           |||| ||||| |||||||||||||||||||||||
Sbjct: 149 atcgcagtccaccaaggaggggatatggtggcag 182

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>dbj|AK099051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151F04, full
           insert sequence
          Length = 1177

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/197 (88%), Gaps = 4/197 (2%)
 Strand = Plus / Plus

                                                                       
Query: 202 cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 151 cgcagtccaccaaggaggggatatggtggcagaggaagaagtccccctaggagggg---a 207

                                                                       
Query: 262 tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
           ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||  |||||
Sbjct: 208 tatggaggacggaaggaacagggttctggcagtctcctggtccgcaacatccctttaagc 267

                                                                       
Query: 322 gccagagcggaggatctccgtgttccttttg-aagggttggtcctgttagggatgtttac 380
             |||||||||||||||  | |||||||||| |||| |||| |||||| | |||||||||
Sbjct: 268 tgcagagcggaggatcttagagttccttttgaaaggtttggacctgttcgagatgtttac 327

                            
Query: 381 cttccgaaggattatta 397
           || || |||||||||||
Sbjct: 328 ctgccaaaggattatta 344



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 158 atcgtagtcccccaaggaggggatatggtggcag 191
           |||| ||||| |||||||||||||||||||||||
Sbjct: 149 atcgcagtccaccaaggaggggatatggtggcag 182

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>dbj|AK062577.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D09, full
           insert sequence
          Length = 1265

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/197 (88%), Gaps = 4/197 (2%)
 Strand = Plus / Plus

                                                                       
Query: 202 cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 150 cgcagtccaccaaggaggggatatggtggcagaggaagaagtccccctaggagggg---a 206

                                                                       
Query: 262 tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
           ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||  |||||
Sbjct: 207 tatggaggacggaaggaacagggttctggcagtctcctggtccgcaacatccctttaagc 266

                                                                       
Query: 322 gccagagcggaggatctccgtgttccttttg-aagggttggtcctgttagggatgtttac 380
             |||||||||||||||  | |||||||||| |||| |||| |||||| | |||||||||
Sbjct: 267 tgcagagcggaggatcttagagttccttttgaaaggtttggacctgttcgagatgtttac 326

                            
Query: 381 cttccgaaggattatta 397
           || || |||||||||||
Sbjct: 327 ctgccaaaggattatta 343



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 158 atcgtagtcccccaaggaggggatatggtggcag 191
           |||| ||||| |||||||||||||||||||||||
Sbjct: 148 atcgcagtccaccaaggaggggatatggtggcag 181

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  163 bits (82), Expect = 5e-37
 Identities = 111/120 (92%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                            
Query: 202      cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
                ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||   |
Sbjct: 23626145 cgcagtccccctaggaggggctatggtggcagaggaagaagtccccctaggagggg---a 23626089

                                                                            
Query: 262      tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
                ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 23626088 tatggaggacggagggagcagggttctggaagtctcttggtccgcaacatcccattaagc 23626029



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 71/79 (89%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                            
Query: 324      cagagcggaggatctccgtgttccttttgaagggtt-ggtcctgttagggatgtttacct 382
                ||||| ||||||||| || |||||||||||| |||| ||||||||| |||||||||||||
Sbjct: 23625888 cagaggggaggatcttcgagttccttttgaaaggtttggtcctgttcgggatgtttacct 23625829

                                   
Query: 383      tccgaaggattattacagc 401
                 || |||||||||||||||
Sbjct: 23625828 gccaaaggattattacagc 23625810



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 94       atgaggaggtacagccccccacaccgtagtcccccgaggaggggttatgg 143
                ||||||||||||||||| ||| | || |||||||| |||||||| |||||
Sbjct: 23626169 atgaggaggtacagcccaccatatcgcagtccccctaggaggggctatgg 23626120



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 158      atcgtagtcccccaaggaggggatatggtggcag 191
                |||| |||||||| |||||||| |||||||||||
Sbjct: 23626147 atcgcagtccccctaggaggggctatggtggcag 23626114

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  163 bits (82), Expect = 5e-37
 Identities = 111/120 (92%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                            
Query: 202      cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
                ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||   |
Sbjct: 23554336 cgcagtccccctaggaggggctatggtggcagaggaagaagtccccctaggagggg---a 23554280

                                                                            
Query: 262      tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
                ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 23554279 tatggaggacggagggagcagggttctggaagtctcttggtccgcaacatcccattaagc 23554220



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 71/79 (89%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                            
Query: 324      cagagcggaggatctccgtgttccttttgaagggtt-ggtcctgttagggatgtttacct 382
                ||||| ||||||||| || |||||||||||| |||| ||||||||| |||||||||||||
Sbjct: 23554079 cagaggggaggatcttcgagttccttttgaaaggtttggtcctgttcgggatgtttacct 23554020

                                   
Query: 383      tccgaaggattattacagc 401
                 || |||||||||||||||
Sbjct: 23554019 gccaaaggattattacagc 23554001



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 94       atgaggaggtacagccccccacaccgtagtcccccgaggaggggttatgg 143
                ||||||||||||||||| ||| | || |||||||| |||||||| |||||
Sbjct: 23554360 atgaggaggtacagcccaccatatcgcagtccccctaggaggggctatgg 23554311



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 158      atcgtagtcccccaaggaggggatatggtggcag 191
                |||| |||||||| |||||||| |||||||||||
Sbjct: 23554338 atcgcagtccccctaggaggggctatggtggcag 23554305

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>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157690

 Score =  163 bits (82), Expect = 5e-37
 Identities = 111/120 (92%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                         
Query: 202   cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
             ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||   |
Sbjct: 80265 cgcagtccccctaggaggggctatggtggcagaggaagaagtccccctaggagggg---a 80321

                                                                         
Query: 262   tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatcccactaagc 321
             ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 80322 tatggaggacggagggagcagggttctggaagtctcttggtccgcaacatcccattaagc 80381



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 71/79 (89%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                         
Query: 324   cagagcggaggatctccgtgttccttttgaagggtt-ggtcctgttagggatgtttacct 382
             ||||| ||||||||| || |||||||||||| |||| ||||||||| |||||||||||||
Sbjct: 80522 cagaggggaggatcttcgagttccttttgaaaggtttggtcctgttcgggatgtttacct 80581

                                
Query: 383   tccgaaggattattacagc 401
              || |||||||||||||||
Sbjct: 80582 gccaaaggattattacagc 80600



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 94    atgaggaggtacagccccccacaccgtagtcccccgaggaggggttatgg 143
             ||||||||||||||||| ||| | || |||||||| |||||||| |||||
Sbjct: 80241 atgaggaggtacagcccaccatatcgcagtccccctaggaggggctatgg 80290



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 158   atcgtagtcccccaaggaggggatatggtggcag 191
             |||| |||||||| |||||||| |||||||||||
Sbjct: 80263 atcgcagtccccctaggaggggctatggtggcag 80296

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>dbj|AB110200.1| Oryza sativa (japonica cultivar-group) mRNA for pre-mRNA splicing
           factor, partial cds, clone: pNS-C4A21
          Length = 1003

 Score =  157 bits (79), Expect = 3e-35
 Identities = 116/127 (91%), Gaps = 1/127 (0%)
 Strand = Plus / Plus

                                                                       
Query: 276 ggagcagggttctggaagtctcttggtccgcaacatcccactaagcgccagagcggagga 335
           |||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||
Sbjct: 5   ggagcagggttctggaagtctcttggtccgcaacatcccattaagctgcagaggggagga 64

                                                                       
Query: 336 tctccgtgttccttttg-aagggttggtcctgttagggatgtttaccttccgaaggatta 394
           ||| || |||||||||| |||| ||||||||||| ||||||||||||| || ||||||||
Sbjct: 65  tcttcgagttccttttgaaaggtttggtcctgttcgggatgtttacctgccaaaggatta 124

                  
Query: 395 ttacagc 401
           |||||||
Sbjct: 125 ttacagc 131

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  149 bits (75), Expect = 8e-33
 Identities = 104/113 (92%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                           
Query: 202     cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
               ||||| || |||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 8556258 cgcagtccaccaaggaggggatatggtggcagaggaagaagtccccctaggagg---gga 8556202

                                                                    
Query: 262     tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatccc 314
               ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 8556201 tatggaggacggaaggaacagggttctggcagtctcctggtccgcaacatccc 8556149



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                           
Query: 324     cagagcggaggatctccgtgttccttttgaagggtt-ggtcctgttagggatgtttacct 382
               |||||||||||||||  | |||||||||||| |||| || |||||| | |||||||||||
Sbjct: 8555779 cagagcggaggatcttagagttccttttgaaaggtttggacctgttcgagatgtttacct 8555720

                              
Query: 383     tccgaaggattatta 397
                || |||||||||||
Sbjct: 8555719 gccaaaggattatta 8555705



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 158     atcgtagtcccccaaggaggggatatggtggcag 191
               |||| ||||| |||||||||||||||||||||||
Sbjct: 8556260 atcgcagtccaccaaggaggggatatggtggcag 8556227

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>dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0009N02
          Length = 121142

 Score =  149 bits (75), Expect = 8e-33
 Identities = 104/113 (92%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                         
Query: 202   cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
             ||||| || |||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 25581 cgcagtccaccaaggaggggatatggtggcagaggaagaagtccccctaggagg---gga 25525

                                                                  
Query: 262   tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatccc 314
             ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 25524 tatggaggacggaaggaacagggttctggcagtctcctggtccgcaacatccc 25472



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                         
Query: 324   cagagcggaggatctccgtgttccttttgaagggtt-ggtcctgttagggatgtttacct 382
             |||||||||||||||  | |||||||||||| |||| || |||||| | |||||||||||
Sbjct: 25102 cagagcggaggatcttagagttccttttgaaaggtttggacctgttcgagatgtttacct 25043

                            
Query: 383   tccgaaggattatta 397
              || |||||||||||
Sbjct: 25042 gccaaaggattatta 25028



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 158   atcgtagtcccccaaggaggggatatggtggcag 191
             |||| ||||| |||||||||||||||||||||||
Sbjct: 25583 atcgcagtccaccaaggaggggatatggtggcag 25550

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>dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1113_G05
          Length = 131445

 Score =  149 bits (75), Expect = 8e-33
 Identities = 104/113 (92%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                          
Query: 202    cgcagccccccaaggaggggatatggtggcagaggaagaagtccccctaggaggggtgga 261
              ||||| || |||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 105528 cgcagtccaccaaggaggggatatggtggcagaggaagaagtccccctaggagg---gga 105472

                                                                   
Query: 262    tatggaggacgaaaggagcagggttctggaagtctcttggtccgcaacatccc 314
              ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 105471 tatggaggacggaaggaacagggttctggcagtctcctggtccgcaacatccc 105419



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                          
Query: 324    cagagcggaggatctccgtgttccttttgaagggtt-ggtcctgttagggatgtttacct 382
              |||||||||||||||  | |||||||||||| |||| || |||||| | |||||||||||
Sbjct: 105049 cagagcggaggatcttagagttccttttgaaaggtttggacctgttcgagatgtttacct 104990

                             
Query: 383    tccgaaggattatta 397
               || |||||||||||
Sbjct: 104989 gccaaaggattatta 104975



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 158    atcgtagtcccccaaggaggggatatggtggcag 191
              |||| ||||| |||||||||||||||||||||||
Sbjct: 105530 atcgcagtccaccaaggaggggatatggtggcag 105497

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>gb|AY105970.1| Zea mays PCO109569 mRNA sequence
          Length = 1186

 Score =  147 bits (74), Expect = 3e-32
 Identities = 181/214 (84%), Gaps = 7/214 (3%)
 Strand = Plus / Plus

                                                                       
Query: 189 cagccccccgcaccgcagccccccaaggaggggatatggtggcagaggaagaagtccccc 248
           |||||||||  | ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 218 cagccccccttatcgcagcccccccaggaggggatatggtggcagaggaagaagcccccc 277

                                                                       
Query: 249 tagg---aggggtggatatggaggacgaaaggagcagggttctggaagtctcttggtccg 305
           |      ||| | |||||||||||||| ||||||   |||  |||||| || ||||||||
Sbjct: 278 tcctcccaggaggggatatggaggacgcaaggag---ggtagtggaagccttttggtccg 334

                                                                       
Query: 306 caacatcccactaagcgccagagcggaggatctccgtgttccttttg-aagggttggtcc 364
           |||||||||| |||| | ||||||||||||||| || |||||||||| |||| |||| ||
Sbjct: 335 caacatcccattaagtgtcagagcggaggatcttcgagttccttttgaaaggtttggccc 394

                                             
Query: 365 tgttagggatgtttaccttccgaaggattattac 398
           |||| ||||||||||| |||| ||||| ||||||
Sbjct: 395 tgttcgggatgtttacattccaaaggactattac 428



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 166 cccccaaggaggggatatggtggcag 191
           ||||| ||||||||||||||||||||
Sbjct: 237 ccccccaggaggggatatggtggcag 262



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 94  atgaggaggtacagccccccacaccgtagtcccccgaggaggggttatgg 143
           ||||||||||||||||||||  | || || ||||| |||||||| |||||
Sbjct: 207 atgaggaggtacagccccccttatcgcagcccccccaggaggggatatgg 256

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>gb|BT016700.1| Zea mays clone Contig533 mRNA sequence
          Length = 1081

 Score =  137 bits (69), Expect = 3e-29
 Identities = 180/214 (84%), Gaps = 6/214 (2%)
 Strand = Plus / Plus

                                                                       
Query: 189 cagccccccgcaccgcagccccccaaggaggggatatggtggcagaggaagaagtcccc- 247
           |||||||||  | ||||||||||| ||||||||||||||||||||||||||||| |||| 
Sbjct: 86  cagccccccttatcgcagcccccccaggaggggatatggtggcagaggaagaagcccccc 145

                                                                       
Query: 248 --ctaggaggggtggatatggaggacgaaaggagcagggttctggaagtctcttggtccg 305
             ||   ||| | ||||||||||||||  |  || |||||   ||||| || ||||||||
Sbjct: 146 tcctcccaggaggggatatggaggacgcga--aggagggtaggggaagccttttggtccg 203

                                                                       
Query: 306 caacatcccactaagcgccagagcggaggatctccgtgttccttttg-aagggttggtcc 364
           |||||||||| |||||| ||||||||||||||| || |||||||||| |||| |||| ||
Sbjct: 204 caacatcccattaagcgtcagagcggaggatcttcgagttccttttgaaaggtttggccc 263

                                             
Query: 365 tgttagggatgtttaccttccgaaggattattac 398
           |||| ||||||||||| |||| ||||| ||||||
Sbjct: 264 tgttcgggatgtttacattccaaaggactattac 297



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 166 cccccaaggaggggatatggtggcag 191
           ||||| ||||||||||||||||||||
Sbjct: 105 ccccccaggaggggatatggtggcag 130



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 94  atgaggaggtacagccccccacaccgtagtcccccgaggaggggttatgg 143
           ||||||||||||||||||||  | || || ||||| |||||||| |||||
Sbjct: 75  atgaggaggtacagccccccttatcgcagcccccccaggaggggatatgg 124

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>gb|AC095015.1| Drosophila melanogaster, chromosome 3R, region 84A-84B, BAC clone
              BACR32J03, complete sequence
          Length = 190642

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 186    tggcagccccccgcaccgcagcccc 210
              |||||||||||||| ||||||||||
Sbjct: 130928 tggcagccccccgccccgcagcccc 130904

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>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence
          Length = 429825

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 186   tggcagccccccgcaccgcagcccc 210
             |||||||||||||| ||||||||||
Sbjct: 92866 tggcagccccccgccccgcagcccc 92890

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>gb|AE003673.3| Drosophila melanogaster chromosome 3R, section 11 of 118 of the complete
              sequence
          Length = 308146

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 186    tggcagccccccgcaccgcagcccc 210
              |||||||||||||| ||||||||||
Sbjct: 185788 tggcagccccccgccccgcagcccc 185764

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>gb|AC002513.1|AC002513 Drosophila melanogaster (P1 DS08322 (D15)) DNA sequence, complete
             sequence
          Length = 79150

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 186   tggcagccccccgcaccgcagcccc 210
             |||||||||||||| ||||||||||
Sbjct: 22897 tggcagccccccgccccgcagcccc 22921

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>gb|AY426813.1| Parryella filifolia internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 675

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 ccgcaccgcagccccccaag 215
           ||||||||||||||||||||
Sbjct: 88  ccgcaccgcagccccccaag 107

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>gb|AY426803.1| Errazurizia rotundata internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 555

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 ccgcaccgcagccccccaag 215
           ||||||||||||||||||||
Sbjct: 37  ccgcaccgcagccccccaag 56

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>gb|AY426775.1| Amorpha georgiana internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 644

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 ccgcaccgcagccccccaag 215
           ||||||||||||||||||||
Sbjct: 74  ccgcaccgcagccccccaag 93

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>gb|AY426774.1| Amorpha fruticosa internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 679

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 ccgcaccgcagccccccaag 215
           ||||||||||||||||||||
Sbjct: 82  ccgcaccgcagccccccaag 101

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>gb|AY426773.1| Amorpha canescens internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 644

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 ccgcaccgcagccccccaag 215
           ||||||||||||||||||||
Sbjct: 75  ccgcaccgcagccccccaag 94

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>gb|AY426771.1| Amorpha apiculata internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 676

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 ccgcaccgcagccccccaag 215
           ||||||||||||||||||||
Sbjct: 85  ccgcaccgcagccccccaag 104

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>gb|DQ178997.1| Streptomyces clavuligerus glyceraldehyde-3-phosphate dehydrogenase 2
            (gap2) gene, complete cds
          Length = 1810

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   ctccccgggcgctccccgga 76
            ||||||||||||||||||||
Sbjct: 1809 ctccccgggcgctccccgga 1790

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>gb|AY186756.1| Arabidopsis lyrata S-related kinase 9 gene, exon 1 and partial cds
          Length = 901

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 cttccgaaggattattacag 400
           ||||||||||||||||||||
Sbjct: 465 cttccgaaggattattacag 484

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>gb|AF156658.1|AF156658 Ambystoma mexicanum MHC class I heavy chain (Mhc) mRNA, Mhc-Amme
           2-01 allele, partial cds
          Length = 408

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 cggaggatctccgtgttcct 348
           ||||||||||||||||||||
Sbjct: 38  cggaggatctccgtgttcct 19

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>gb|AF156657.1|AF156657 Ambystoma mexicanum MHC class I heavy chain (Mhc) mRNA, Mhc-Amme
           2-08 allele, partial cds
          Length = 408

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 cggaggatctccgtgttcct 348
           ||||||||||||||||||||
Sbjct: 38  cggaggatctccgtgttcct 19

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>gb|AF156656.1|AF156656 Ambystoma mexicanum MHC class I heavy chain (Mhc) mRNA, Mhc-Amme
           2-13 allele, partial cds
          Length = 408

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 cggaggatctccgtgttcct 348
           ||||||||||||||||||||
Sbjct: 38  cggaggatctccgtgttcct 19

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>gb|U59890.1|AFU59890 Amorpha fruticosa 5.8S ribosomal RNA gene and internal transcribed
           spacers 1 and 2, complete sequence
          Length = 639

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 ccgcaccgcagccccccaag 215
           ||||||||||||||||||||
Sbjct: 72  ccgcaccgcagccccccaag 91

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     gcagaggaagaagtccccct 249
               ||||||||||||||||||||
Sbjct: 2844918 gcagaggaagaagtccccct 2844899

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>gb|AC016689.4| Homo sapiens BAC clone RP11-81H20 from 2, complete sequence
          Length = 134841

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    ggcagaggaagaagtccccc 248
              ||||||||||||||||||||
Sbjct: 130323 ggcagaggaagaagtccccc 130342

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>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085L11
          Length = 148142

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   gcagaggaagaagtccccct 249
             ||||||||||||||||||||
Sbjct: 88399 gcagaggaagaagtccccct 88380

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>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0046E09
          Length = 146776

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  gcagaggaagaagtccccct 249
            ||||||||||||||||||||
Sbjct: 5064 gcagaggaagaagtccccct 5045

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      gcacccccgcggcggcggac 56
               ||||||||||||||||||||
Sbjct: 1739955 gcacccccgcggcggcggac 1739936

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>gb|AY108472.1| Zea mays PCO119082 mRNA sequence
          Length = 2122

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 263  atggaggacgaaaggagcag 282
            ||||||||||||||||||||
Sbjct: 2008 atggaggacgaaaggagcag 1989

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>gb|U83138.1|AMU83138 Ambystoma mexicanum MHC class IA alpha chain mRNA, partial cds
          Length = 2162

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 cggaggatctccgtgttcct 348
           ||||||||||||||||||||
Sbjct: 215 cggaggatctccgtgttcct 196

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>gb|AC140244.3| Mus musculus BAC clone RP24-285J23 from 14, complete sequence
          Length = 171011

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   ccccccgcaccgcagccccc 211
             ||||||||||||||||||||
Sbjct: 51544 ccccccgcaccgcagccccc 51525


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,745,925
Number of Sequences: 3902068
Number of extensions: 2745925
Number of successful extensions: 46864
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46605
Number of HSP's gapped (non-prelim): 215
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result